Germline Sets - Mus musculus
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Mouse (Mus musculus)
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Mouse (Mus musculus)
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For an easy way to download sets at the command line, see
download_germline_set
in the
receptor_utils package
.
The
receptor_utils documentation
also has walkthroughs showing how to use the germline sets with
IgBLAST
and
MiXCR
.
Using the mouse germline sets on OGRDB
For information on the names and approach used in these sets, please see
our paper.
Want more information in FASTA file headers or annotations?
receptor-germline-tools.
The
OGRDB REST API
allows you to list and download germline sets programatically.
Set Name
Species subgroup
Locus
Release Version
Release Date
Download
DOI
129S1/SvImJ IGKV
129S1/SvImJ
IGK
2
2022-05-03
AIRR (JSON)
FASTA Gapped
FASTA Ungapped
129S1/SvImJ IGLV
129S1/SvImJ
IGL
3
2024-04-20
AIRR (JSON)
FASTA Gapped
FASTA Ungapped
A/J IGKV
A/J
IGK
2
2022-05-03
AIRR (JSON)
FASTA Gapped
FASTA Ungapped
A/J IGLV
A/J
IGL
2
2022-05-03
AIRR (JSON)
FASTA Gapped
FASTA Ungapped
AKR/J IGKV
AKR/J
IGK
1
2022-05-03
AIRR (JSON)
FASTA Gapped
FASTA Ungapped
AKR/J IGLV
AKR/J
IGL
1
2022-05-03
AIRR (JSON)
FASTA Gapped
FASTA Ungapped
BALB/c IGH
BALB/c
IGH
3
2022-06-02
AIRR (JSON)
FASTA Gapped
FASTA Ungapped
BALB/c/ByJ IGKV
BALB/c/ByJ
IGK
1
2022-05-03
AIRR (JSON)
FASTA Gapped
FASTA Ungapped
BALB/c/ByJ IGLV
BALB/c/ByJ
IGL
2
2024-04-20
AIRR (JSON)
FASTA Gapped
FASTA Ungapped
C3H/HeJ IGKV
C3H/HeJ
IGK
1
2022-05-03
AIRR (JSON)
FASTA Gapped
FASTA Ungapped
C3H/HeJ IGLV
C3H/HeJ
IGL
1
2022-05-03
AIRR (JSON)
FASTA Gapped
FASTA Ungapped
C57BL/6 IGH
C57BL/6
IGH
5
2024-10-15
AIRR (JSON)
FASTA Gapped
FASTA Ungapped
C57BL/6J IGKV
C57BL/6J
IGK
1
2022-05-03
AIRR (JSON)
FASTA Gapped
FASTA Ungapped
C57BL/6J IGLV
C57BL/6J
IGL
1
2022-05-03
AIRR (JSON)
FASTA Gapped
FASTA Ungapped
CAST/EiJ IGH
CAST/EiJ
IGH
1
2022-05-14
AIRR (JSON)
FASTA Gapped
FASTA Ungapped
CAST/EiJ IGKV
CAST/EiJ
IGK
1
2022-05-03
AIRR (JSON)
FASTA Gapped
FASTA Ungapped
CAST/EiJ IGLV
CAST/EiJ
IGL
1
2022-05-03
AIRR (JSON)
FASTA Gapped
FASTA Ungapped
CBA/J IGKV
CBA/J
IGK
1
2022-05-03
AIRR (JSON)
FASTA Gapped
FASTA Ungapped
CBA/J IGLV
CBA/J
IGL
1
2022-05-03
AIRR (JSON)
FASTA Gapped
FASTA Ungapped
DBA/1J IGKV
DBA/1J
IGK
1
2022-05-03
AIRR (JSON)
FASTA Gapped
FASTA Ungapped
DBA/1J IGLV
DBA/1J
IGL
1
2022-05-03
AIRR (JSON)
FASTA Gapped
FASTA Ungapped
DBA/2J IGKV
DBA/2J
IGK
1
2022-05-03
AIRR (JSON)
FASTA Gapped
FASTA Ungapped
DBA/2J IGLV
DBA/2J
IGL
1
2022-05-03
AIRR (JSON)
FASTA Gapped
FASTA Ungapped
IGKJ (all strains)
IGK
1
2022-05-31
AIRR (JSON)
FASTA Gapped
FASTA Ungapped
IGLJ (all strains)
IGL
1
2022-05-31
AIRR (JSON)
FASTA Gapped
FASTA Ungapped
LEWES/EiJ IGH
LEWES/EiJ
IGH
1
2022-05-14
AIRR (JSON)
FASTA Gapped
FASTA Ungapped
LEWES/EiJ IGKV
LEWES/EiJ
IGK
1
2022-05-03
AIRR (JSON)
FASTA Gapped
FASTA Ungapped
LEWES/EiJ IGLV
LEWES/EiJ
IGL
1
2022-05-03
AIRR (JSON)
FASTA Gapped
FASTA Ungapped
MRL/MpJ IGKV
MRL/MpJ
IGK
1
2022-05-03
AIRR (JSON)
FASTA Gapped
FASTA Ungapped
MRL/MpJ IGLV
MRL/MpJ
IGL
1
2022-05-03
AIRR (JSON)
FASTA Gapped
FASTA Ungapped
MSM/MsJ IGH
MSM/MsJ
IGH
1
2022-05-15
AIRR (JSON)
FASTA Gapped
FASTA Ungapped
MSM/MsJ IGKV
MSM/MsJ
IGK
1
2022-05-03
AIRR (JSON)
FASTA Gapped
FASTA Ungapped
MSM/MsJ IGLV
MSM/MsJ
IGL
1
2022-05-03
AIRR (JSON)
FASTA Gapped
FASTA Ungapped
NOD/ShiLtJ IGH
NOD/ShiLtJ
IGH
1
2022-05-15
AIRR (JSON)
FASTA Gapped
FASTA Ungapped
NOD/ShiLtJ IGKV
NOD/ShiLtJ
IGK
1
2022-05-03
AIRR (JSON)
FASTA Gapped
FASTA Ungapped
NOD/ShiLtJ IGLV
NOD/ShiLtJ
IGL
1
2022-05-03
AIRR (JSON)
FASTA Gapped
FASTA Ungapped
NOR/LtJ IGKV
NOR/LtJ
IGK
1
2022-05-03
AIRR (JSON)
FASTA Gapped
FASTA Ungapped
NOR/LtJ IGLV
NOR/LtJ
IGL
1
2022-05-03
AIRR (JSON)
FASTA Gapped
FASTA Ungapped
NZB/BlNJ IGKV
NZB/BlNJ
IGK
1
2022-05-03
AIRR (JSON)
FASTA Gapped
FASTA Ungapped
NZB/BlNJ IGLV
NZB/BlNJ
IGL
1
2022-05-03
AIRR (JSON)
FASTA Gapped
FASTA Ungapped
PWD/PhJ IGH
PWD/PhJ
IGH
2
2024-10-15
AIRR (JSON)
FASTA Gapped
FASTA Ungapped
PWD/PhJ IGKV
PWD/PhJ
IGK
1
2022-05-03
AIRR (JSON)
FASTA Gapped
FASTA Ungapped
PWD/PhJ IGLV
PWD/PhJ
IGL
1
2022-05-03
AIRR (JSON)
FASTA Gapped
FASTA Ungapped
SJL/J IGKV
SJL/J
IGK
1
2022-05-03
AIRR (JSON)
FASTA Gapped
FASTA Ungapped
SJL/J IGLV
SJL/J
IGL
1
2022-05-03
AIRR (JSON)
FASTA Gapped
FASTA Ungapped
For an easy way to download sets at the command line, see
download_germline_set
in the
receptor_utils package
.
The
receptor_utils documentation
also has walkthroughs showing how to use the germline sets with
IgBLAST
and
MiXCR
.
Using the mouse germline sets on OGRDB
For information on the names and approach used in these sets, please see
our paper.
Want more information in FASTA file headers or annotations?
receptor-germline-tools.
The
OGRDB REST API
allows you to list and download germline sets programatically.