Notes

The germline set is based on sequences published in Kos et al. (2022) (in preparation)

Details

AuthorJustin Kos
Lab NameUniversity of Louisville School of Medicine
Lab AddressUniversity of Louisville, Louisville, KY 40202, USA
NameC3H/HeJ IGLV
SpeciesMus musculus
Species subgroupC3H/HeJ
Subgroup typestrain
LocusIGL
Release Version1
Release DescriptionIGLV sequences as described in Kos et al. (2022)
Release Date2022-05-03
doi10.5281/zenodo.7116789

Included Sequences

The download in Excel or CSV format includes sequences, flanking regions and additional detail.

LabelVnDateIMGT NameAlt NamesFunctionalitySubgrpGenomic AccessionsInferencel_part1l_part2v_heptamerv_nonamerj_heptamerj_nonamerd_3_heptamerd_3_nonamerd_5_heptamerd_5_nonamer3' Ext5' ExtSequenceGapped Sequence
IGLV-R3TZ 12022-05-03Musmus IGLV1*01 FKos et al: IGLV1*01_C3HFC3H/HeJRearrangedCAGGCTGTTGTGACTCAGGAATCTGCACTCACCACATCACCTGGTGAAACAGTCACACTCACTTGTCGCTCAAGTACTGGGGCTGTTACAACTAGTAACTATGCCAACTGGGTCCAAGAAAAACCAGATCATTTATTCACTGGTCTAATAGGTGGTACCAACAACCGAGCTCCAGGTGTTCCTGCCAGATTCTCAGGCTCCCTGATTGGAGACAAGGCTGCCCTCACCATCACAGGGGCACAGACTGAGGATGAGGCAATATATTTCTGTGCTCTATGGTACAGCAACCATTTCCAGGCTGTTGTGACTCAGGAATCTGCA...CTCACCACATCACCTGGTGAAACAGTCACACTCACTTGTCGCTCAAGTACTGGGGCTGTTACA.........ACTAGTAACTATGCCAACTGGGTCCAAGAAAAACCAGATCATTTATTCACTGGTCTAATAGGTGGTACC.....................AACAACCGAGCTCCAGGTGTTCCT...GCCAGATTCTCAGGCTCCCTG......ATTGGAGACAAGGCTGCCCTCACCATCACAGGGGCACAGACTGAGGATGAGGCAATATATTTCTGTGCTCTATGGTACAGCAACCATTTC
IGLV-Z6QW 12022-05-03Musmus IGLV2*02 FKos et al: IGLV2*02_C3HFC3H/HeJRearrangedCAGGCTGTTGTGACTCAGGAATCTGCACTCACCACATCACCTGGTGGAACAGTCATACTCACTTGTCGCTCAAGTACTGGGGCTGTTACAACTAGTAACTATGCCAACTGGGTCCAAGAAAAACCAGATCATTTATTCACTGGTCTAATAGGTGGTACCAGCAACCGAGCTCCAGGTGTTCCTGTCAGATTCTCAGGCTCCCTGATTGGAGACAAGGCTGCCCTCACCATCACAGGGGCACAGACTGAGGATGATGCAATGTATTTCTGTGCTCTATGGTACAGCACCCATTTCCAGGCTGTTGTGACTCAGGAATCTGCA...CTCACCACATCACCTGGTGGAACAGTCATACTCACTTGTCGCTCAAGTACTGGGGCTGTTACA.........ACTAGTAACTATGCCAACTGGGTCCAAGAAAAACCAGATCATTTATTCACTGGTCTAATAGGTGGTACC.....................AGCAACCGAGCTCCAGGTGTTCCT...GTCAGATTCTCAGGCTCCCTG......ATTGGAGACAAGGCTGCCCTCACCATCACAGGGGCACAGACTGAGGATGATGCAATGTATTTCTGTGCTCTATGGTACAGCACCCATTTC
IGLV-ZGHK 12022-05-03Musmus IGLV3*01 FKos et al: IGLV3*01_C3HFC3H/HeJRearrangedCAACTTGTGCTCACTCAGTCATCTTCAGCCTCTTTCTCCCTGGGAGCCTCAGCAAAACTCACGTGCACCTTGAGTAGTCAGCACAGTACGTACACCATTGAATGGTATCAGCAACAGCCACTCAAGCCTCCTAAGTATGTGATGGAGCTTAAGAAAGATGGAAGCCACAGCACAGGTGATGGGATTCCTGATCGCTTCTCTGGATCCAGCTCTGGTGCTGATCGCTACCTTAGCATTTCCAACATCCAGCCTGAAGATGAAGCAATATACATCTGTGGTGTGGGTGATACAATTAAGGAACAATTTGTGTAACCAACTTGTGCTCACTCAGTCATCTTCA...GCCTCTTTCTCCCTGGGAGCCTCAGCAAAACTCACGTGCACCTTGAGTAGTCAGCACAGT...............ACGTACACCATTGAATGGTATCAGCAACAGCCACTCAAGCCTCCTAAGTATGTGATGGAGCTTAAGAAAGAT.........GGAAGCCACAGCACAGGTGATGGGATTCCT...GATCGCTTCTCTGGATCCAGC......TCTGGTGCTGATCGCTACCTTAGCATTTCCAACATCCAGCCTGAAGATGAAGCAATATACATCTGTGGTGTGGGTGATACAATTAAGGAACAATTTGTGTAAC

Acknowledgements

Individuals acknowledged as contributing to this sequence:

No Items

History

History logs the times and reasons for the publication of each version of this germline set. Key changes are noted. For detailed changes, click on the link to the sequence.

William Lees
2022-04-25 10:43:50
Mouse germline set G00011 (C3H/HeJ IGLV) created

Mouse germline set G00011 (C3H/HeJ IGLV) created

William Lees
2022-05-03 11:18:50
Version 1 published

This version as published in preprint at https://www.biorxiv.org/content/10.1101/2022.05.01.489089v1

Versions

All published versions of this germline set.

Set NameSpeciesSpecies subgroupLocusRelease VersionRelease Datedoi
C3H/HeJ IGLVMus musculusC3H/HeJIGL12022-05-0310.5281/zenodo.7116789