Germline Set 129S1/SvImJ IGLV
Notes
The germline set is based on sequences published in Kos et al. (2022) (in preparation)
Details
| Author | Justin Kos |
| Lab Name | University of Louisville School of Medicine |
| Lab Address | University of Louisville, Louisville, KY 40202, USA |
| Name | 129S1/SvImJ IGLV |
| Species | Mus musculus |
| Species subgroup | 129S1/SvImJ |
| Subgroup type | strain |
| Locus | IGL |
| Release Version | 3 |
| Release Description | IGLV sequences as described in Kos et al. (2022) |
| Release Date | 2024-04-20 |
| doi | 10.5281/zenodo.11002141 |
Included Sequences
The download in Excel or CSV format includes sequences, flanking regions and additional detail.
| Label | Vn | Date | IMGT Name | Alt Names | Functionality | Subgrp | Genomic Accessions | Inference | l_part1 | l_part2 | v_heptamer | v_nonamer | j_heptamer | j_nonamer | d_3_heptamer | d_3_nonamer | d_5_heptamer | d_5_nonamer | 3' Ext | 5' Ext | Sequence | Gapped Sequence |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| IGLV-DOAL | 3 | 2024-04-20 | Musmus IGLV1*01 F | Kos et al: IGLV1*01_129S6 | F | 129S1/SvImJ | Genomic Only | CAGGCTGTTGTGACTCAGGAATCTGCACTCACCACATCACCTGGTGAAACAGTCACACTCACTTGTCGCTCAAGTACTGGGGCTGTTACAACTAGTAACTATGCCAACTGGGTCCAAGAAAAACCAGATCATTTATTCACTGGTCTAATAGGTGGTACCAACAACCGAGCTCCAGGTGTTCCTGCCAGATTCTCAGGCTCCCTGATTGGAGACAAGGCTGCCCTCACCATCACAGGGGCACAGACTGAGGATGAGGCAATATATTTCTGTGCTCTATGGTACAGCAACCATTTC | CAGGCTGTTGTGACTCAGGAATCTGCA...CTCACCACATCACCTGGTGAAACAGTCACACTCACTTGTCGCTCAAGTACTGGGGCTGTTACA.........ACTAGTAACTATGCCAACTGGGTCCAAGAAAAACCAGATCATTTATTCACTGGTCTAATAGGTGGTACC.....................AACAACCGAGCTCCAGGTGTTCCT...GCCAGATTCTCAGGCTCCCTG......ATTGGAGACAAGGCTGCCCTCACCATCACAGGGGCACAGACTGAGGATGAGGCAATATATTTCTGTGCTCTATGGTACAGCAACCATTTC | |||||||||||||
| IGLV-XX4M | 3 | 2024-04-20 | Musmus IGLV3*01 F | Kos et al: IGLV3*01_129S6 | F | 129S1/SvImJ | Genomic Only | CAACTTGTGCTCACTCAGTCATCTTCAGCCTCTTTCTCCCTGGGAGCCTCAGCAAAACTCACGTGCACCTTGAGTAGTCAGCACAGTACGTACACCATTGAATGGTATCAGCAACAGCCACTCAAGCCTCCTAAGTATGTGATGGAGCTTAAGAAAGATGGAAGCCACAGCACAGGTGATGGGATTCCTGATCGCTTCTCTGGATCCAGCTCTGGTGCTGATCGCTACCTTAGCATTTCCAACATCCAGCCTGAAGATGAAGCAATATACATCTGTGGTGTGGGTGATACAATTAAGGAACAATTTGTGTAAC | CAACTTGTGCTCACTCAGTCATCTTCA...GCCTCTTTCTCCCTGGGAGCCTCAGCAAAACTCACGTGCACCTTGAGTAGTCAGCACAGT...............ACGTACACCATTGAATGGTATCAGCAACAGCCACTCAAGCCTCCTAAGTATGTGATGGAGCTTAAGAAAGAT.........GGAAGCCACAGCACAGGTGATGGGATTCCT...GATCGCTTCTCTGGATCCAGC......TCTGGTGCTGATCGCTACCTTAGCATTTCCAACATCCAGCCTGAAGATGAAGCAATATACATCTGTGGTGTGGGTGATACAATTAAGGAACAATTTGTGTAAC | |||||||||||||
| IGLV-YE36 | 3 | 2024-04-20 | Musmus IGLV2*02 F | Kos et al: IGLV2*02_129S6 | F | 129S1/SvImJ | Genomic Only | CAGGCTGTTGTGACTCAGGAATCTGCACTCACCACATCACCTGGTGGAACAGTCATACTCACTTGTCGCTCAAGTACTGGGGCTGTTACAACTAGTAACTATGCCAACTGGGTCCAAGAAAAACCAGATCATTTATTCACTGGTCTAATAGGTGGTACCAGCAACCGAGCTCCAGGTGTTCCTGTCAGATTCTCAGGCTCCCTGATTGGAGACAAGGCTGCCCTCACCATCACAGGGGCACAGACTGAGGATGATGCAATGTATTTCTGTGCTCTATGGTACAGCACCCATTTC | CAGGCTGTTGTGACTCAGGAATCTGCA...CTCACCACATCACCTGGTGGAACAGTCATACTCACTTGTCGCTCAAGTACTGGGGCTGTTACA.........ACTAGTAACTATGCCAACTGGGTCCAAGAAAAACCAGATCATTTATTCACTGGTCTAATAGGTGGTACC.....................AGCAACCGAGCTCCAGGTGTTCCT...GTCAGATTCTCAGGCTCCCTG......ATTGGAGACAAGGCTGCCCTCACCATCACAGGGGCACAGACTGAGGATGATGCAATGTATTTCTGTGCTCTATGGTACAGCACCCATTTC |
Acknowledgements
Individuals acknowledged as contributing to this sequence:
No Items
History
History logs the times and reasons for the publication of each version of this germline set. Key changes are noted. For detailed changes, click on the link to the sequence.
| William Lees 2022-04-25 10:38:51 | Mouse germline set G00007 (129S1/SvlmJ IGLV) created Mouse germline set G00007 (129S1/SvlmJ IGLV) created |
| William Lees 2022-05-03 10:37:42 | Version 1 published This version as published in preprint at https://www.biorxiv.org/content/10.1101/2022.05.01.489089v1 |
| William Lees 2022-05-03 10:59:49 | Version 2 published Correct description |
| William Lees 2024-04-20 15:13:52 | Version 3 published Fix strain name – use upper case I not lower case L |
Versions
All published versions of this germline set.
| Set Name | Species | Species subgroup | Locus | Release Version | Release Date | doi |
|---|---|---|---|---|---|---|
| 129S1/SvImJ IGLV | Mus musculus | 129S1/SvImJ | IGL | 3 | 2024-04-20 | 10.5281/zenodo.11002141 |