Notes

The germline set is based on sequences published in Kos et al. (2022) (in preparation)

Details

AuthorJustin Kos
Lab NameUniversity of Louisville School of Medicine
Lab AddressUniversity of Louisville, Louisville, KY 40202, USA
NameMSM/MsJ IGLV
SpeciesMus musculus
Species subgroupMSM/MsJ
Subgroup typestrain
LocusIGL
Release Version1
Release DescriptionIGLV sequences as described in Kos et al. (2022)
Release Date2022-05-03
doi10.5281/zenodo.7117045

Included Sequences

The download in Excel or CSV format includes sequences, flanking regions and additional detail.

LabelVnDateIMGT NameAlt NamesFunctionalitySubgrpGenomic AccessionsInferencel_part1l_part2v_heptamerv_nonamerj_heptamerj_nonamerd_3_heptamerd_3_nonamerd_5_heptamerd_5_nonamer3' Ext5' ExtSequenceGapped Sequence
IGLV-37NY 12022-05-03Kos et al: IGLV5*01_MSMFMSM/MsJRearrangedTTACTCAGCCAAGCTCTGTGTCTACGTCTCTAGGAAGCACAGCCAAACTGCCTTGCAAGGCCAGCACTGGTAACATTGGAGACAGCTATGTGAACTGGTACCAGCAGTACATGGGAAGATCTCCCACTAATATGATCTATGGAGATGATCTCCGACCATCTGGAGTTTCTGATAGGTTCTCTGGCTCCATTCACAGCTCTTCCAACTCAGCCTTCCTGACAATCCAAAATGTGCAGGCTGATGATTTACTCAGCCAAGCTCTGTGTCTACGT...CTCTAGGAAGCACAGCCAAACTGCCTTGCAAGGCCAGCACTGGTAACATTGGAGACAGCT............ATGTGAACTGGTACCAGCAGTACATGGGAAGATCTCCCACTAATATGATCTATGGAGATGATCTCCGAC.....................CATCTGGAGTTTCTGATAGGTTCT...CTGGCTCCATTCACAGCTCTTCCAACTCAGCCTTCCTGACAATCCAAAATGTGCAGGCTGATGAT
IGLV-COOR 12022-05-03Kos et al: IGLV6*03_MSMFMSM/MsJRearrangedTTACTCAGCCAAGCTCTGTGTCTACATCTCTAGGAAGCACAGTCAAACTGCCTTGCAAGCGCAGCACTGGAAATATTGGAAGCTACTATGTGCATTGGTACCAGCAACATATGGGAAGATCTCCCACCAATATGATCCATAGTGATGATCAGCGACCATCTGGAGTTTCTGATAGGTTCTCTGGCTCCATTGACAGCTCTTCCAACTCAGCCTTCCTGACAATCAATAATGTTCAGGCTGAGGATTTACTCAGCCAAGCTCTGTGTCTACAT...CTCTAGGAAGCACAGTCAAACTGCCTTGCAAGCGCAGCACTGGAAATATTGGAAGCTACT............ATGTGCATTGGTACCAGCAACATATGGGAAGATCTCCCACCAATATGATCCATAGTGATGATCAGCGAC.....................CATCTGGAGTTTCTGATAGGTTCT...CTGGCTCCATTGACAGCTCTTCCAACTCAGCCTTCCTGACAATCAATAATGTTCAGGCTGAGGAT
IGLV-E6HF 12022-05-03Musmus IGLV1*01 FKos et al: IGLV1*01_MSMFMSM/MsJRearrangedCAGGCTGTTGTGACTCAGGAATCTGCACTCACCACATCACCTGGTGAAACAGTCACACTCACTTGTCGCTCAAGTACTGGGGCTGTTACAACTAGTAACTATGCCAACTGGGTCCAAGAAAAACCAGATCATTTATTCACTGGTCTAATAGGTGGTACCAACAACCGAGCTCCAGGTGTTCCTGCCAGATTCTCAGGCTCCCTGATTGGAGACAAGGCTGCCCTCACCATCACAGGGGCACAGACTGAGGATGAGGCAATATATTTCTGTGCTCTATGGTACAGCAACCATTTCCAGGCTGTTGTGACTCAGGAATCTGCA...CTCACCACATCACCTGGTGAAACAGTCACACTCACTTGTCGCTCAAGTACTGGGGCTGTTACA.........ACTAGTAACTATGCCAACTGGGTCCAAGAAAAACCAGATCATTTATTCACTGGTCTAATAGGTGGTACC.....................AACAACCGAGCTCCAGGTGTTCCT...GCCAGATTCTCAGGCTCCCTG......ATTGGAGACAAGGCTGCCCTCACCATCACAGGGGCACAGACTGAGGATGAGGCAATATATTTCTGTGCTCTATGGTACAGCAACCATTTC
IGLV-YMD5 12022-05-03Kos et al: IGLV3*01_MSMFMSM/MsJRearrangedCAACTTGTGCTCACTCAGTCATCTTCAGCCTCTTTCTCCCTGGGAGCCTCAGCAAAACTCACGTGCACCTTGAGTAGTCAGCACAGTACGTACACCATTGAATGGTATCAGCAACAGCCACTCAAGCCTCCTAAGTATGTGATGGAGCTTAAGAAAGATGGAAGCCACAGCACAGGTGATGGGATCCCTGATCGCTTCTCTGGATCCAGCTCTGGTGCTGATCGCTACCTTAGCATTTCCAACATCCAGCCTGAAGATGAAGCAATATACATCTGTGGTGTGGGTGATACAATTAAGGAACAATTTGTGTAACCAACTTGTGCTCACTCAGTCATCTTCA...GCCTCTTTCTCCCTGGGAGCCTCAGCAAAACTCACGTGCACCTTGAGTAGTCAGCACAGT...............ACGTACACCATTGAATGGTATCAGCAACAGCCACTCAAGCCTCCTAAGTATGTGATGGAGCTTAAGAAAGAT.........GGAAGCCACAGCACAGGTGATGGGATCCCT...GATCGCTTCTCTGGATCCAGC......TCTGGTGCTGATCGCTACCTTAGCATTTCCAACATCCAGCCTGAAGATGAAGCAATATACATCTGTGGTGTGGGTGATACAATTAAGGAACAATTTGTGTAAC
IGLV-ZKBR 12022-05-03Musmus IGLV2*02 FKos et al: IGLV2*02_MSMFMSM/MsJRearrangedCAGGCTGTTGTGACTCAGGAATCTGCACTCACCACATCACCTGGTGGAACAGTCATACTCACTTGTCGCTCAAGTACTGGGGCTGTTACAACTAGTAACTATGCCAACTGGGTCCAAGAAAAACCAGATCATTTATTCACTGGTCTAATAGGTGGTACCAGCAACCGAGCTCCAGGTGTTCCTGTCAGATTCTCAGGCTCCCTGATTGGAGACAAGGCTGCCCTCACCATCACAGGGGCACAGACTGAGGATGATGCAATGTATTTCTGTGCTCTATGGTACAGCACCCATTTCCAGGCTGTTGTGACTCAGGAATCTGCA...CTCACCACATCACCTGGTGGAACAGTCATACTCACTTGTCGCTCAAGTACTGGGGCTGTTACA.........ACTAGTAACTATGCCAACTGGGTCCAAGAAAAACCAGATCATTTATTCACTGGTCTAATAGGTGGTACC.....................AGCAACCGAGCTCCAGGTGTTCCT...GTCAGATTCTCAGGCTCCCTG......ATTGGAGACAAGGCTGCCCTCACCATCACAGGGGCACAGACTGAGGATGATGCAATGTATTTCTGTGCTCTATGGTACAGCACCCATTTC

Acknowledgements

Individuals acknowledged as contributing to this sequence:

No Items

History

History logs the times and reasons for the publication of each version of this germline set. Key changes are noted. For detailed changes, click on the link to the sequence.

William Lees
2022-04-25 11:09:57
Mouse germline set G00020 (MSM/MsJ) created

Mouse germline set G00020 (MSM/MsJ) created

William Lees
2022-05-03 11:39:24
Version 1 published

This version as published in preprint at https://www.biorxiv.org/content/10.1101/2022.05.01.489089v1

Versions

All published versions of this germline set.

Set NameSpeciesSpecies subgroupLocusRelease VersionRelease Datedoi
MSM/MsJ IGLVMus musculusMSM/MsJIGL12022-05-0310.5281/zenodo.7117045