Germline Set IGKJ (all strains)
Notes
IGKJ genes for use with all strains
As published in Kos et al. (2022) (in preparation)
Details
| Author | William Lees |
| Lab Name | |
| Lab Address | Birkbeck College, University of London, Malet Street, London |
| Name | IGKJ (all strains) |
| Species | Mus musculus |
| Species subgroup | |
| Subgroup type | none |
| Locus | IGK |
| Release Version | 1 |
| Release Description | First release |
| Release Date | 2022-05-31 |
| doi | 10.5281/zenodo.7116926 |
Included Sequences
The download in Excel or CSV format includes sequences, flanking regions and additional detail.
| Label | Vn | Date | IMGT Name | Alt Names | Functionality | Subgrp | Genomic Accessions | Inference | l_part1 | l_part2 | v_heptamer | v_nonamer | j_heptamer | j_nonamer | d_3_heptamer | d_3_nonamer | d_5_heptamer | d_5_nonamer | 3' Ext | 5' Ext | Sequence | Gapped Sequence |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| IGKJ-4JXG | 1 | 2022-05-31 | IGKJ1*01 | Kos et al: IGKJ1*01 | F | Rearranged Only | GTGGACGTTCGGTGGAGGCACCAAGCTGGAAATCAAAC | GTGGACGTTCGGTGGAGGCACCAAGCTGGAAATCAAAC | ||||||||||||||
| IGKJ-5NUZ | 1 | 2022-05-31 | IGKJ3*02 | Kos et al: IGKJ3*02 | ORF | Rearranged Only | AACCACATTCAGTGATGGGACCAGACTGGAAATAAAAC | AACCACATTCAGTGATGGGACCAGACTGGAAATAAAAC | ||||||||||||||
| IGKJ-ABRI | 1 | 2022-05-31 | Kos et al: IGKJ2*03_15 | F | Rearranged Only | TGTACACGTTCGGATCGGGGACCAAGCTGGAAATAAAAC | TGTACACGTTCGGATCGGGGACCAAGCTGGAAATAAAAC | |||||||||||||||
| IGKJ-AR7L | 1 | 2022-05-31 | IGKJ2*02 | Kos et al: IGKJ2*02 | F | Rearranged Only | TGTATACGTTCGGATCGGGGACCAAGCTGGAAATGAAAC | TGTATACGTTCGGATCGGGGACCAAGCTGGAAATGAAAC | ||||||||||||||
| IGKJ-HVOR | 1 | 2022-05-31 | IGKJ2*03 | Kos et al: IGKJ2*03 | F | Rearranged Only | TGTATACGTTCGGATCGGGGACCAAGCTGGAAATAAAAC | TGTATACGTTCGGATCGGGGACCAAGCTGGAAATAAAAC | ||||||||||||||
| IGKJ-IIHF | 1 | 2022-05-31 | IGKJ3*01 | Kos et al: IGKJ3*01 | ORF | Rearranged Only | AATCACATTCAGTGATGGGACCAGACTGGAAATAAAAC | AATCACATTCAGTGATGGGACCAGACTGGAAATAAAAC | ||||||||||||||
| IGKJ-LUDL | 1 | 2022-05-31 | IGKJ4*02 | Kos et al: IGKJ4*02 | F | Rearranged Only | ATTCACGTTCGGCACGGGGACAAAATTGGAAATAAAAC | ATTCACGTTCGGCACGGGGACAAAATTGGAAATAAAAC | ||||||||||||||
| IGKJ-MXRV | 1 | 2022-05-31 | IGKJ2*01 | Kos et al: IGKJ2*01 | F | Rearranged Only | TGTACACGTTCGGAGGGGGGACCAAGCTGGAAATAAAAC | TGTACACGTTCGGAGGGGGGACCAAGCTGGAAATAAAAC | ||||||||||||||
| IGKJ-O4CL | 1 | 2022-05-31 | IGKJ5*01 | Kos et al: IGKJ5*01 | F | Rearranged Only | GCTCACGTTCGGTGCTGGGACCAAGCTGGAGCTGAAAC | GCTCACGTTCGGTGCTGGGACCAAGCTGGAGCTGAAAC | ||||||||||||||
| IGKJ-WRAP | 1 | 2022-05-31 | IGKJ1*02 | Kos et al: IGKJ1*02 | F | Rearranged Only | CCGACGTTCGGTGGAGGCACCAAGCTGGAAATCAATC | CCGACGTTCGGTGGAGGCACCAAGCTGGAAATCAATC | ||||||||||||||
| IGKJ-Z5J4 | 1 | 2022-05-31 | IGKJ4*01 | Kos et al: IGKJ4*01 | F | Rearranged Only | ATTCACGTTCGGCTCGGGGACAAAGTTGGAAATAAAAC | ATTCACGTTCGGCTCGGGGACAAAGTTGGAAATAAAAC |
Acknowledgements
Individuals acknowledged as contributing to this sequence:
No Items
History
History logs the times and reasons for the publication of each version of this germline set. Key changes are noted. For detailed changes, click on the link to the sequence.
| William Lees 2022-05-31 09:06:47 | Mouse germline set G00054 (IGKJ (all strains)) created Mouse germline set G00054 (IGKJ (all strains)) created |
| William Lees 2022-05-31 09:18:54 | Version 1 published First release |
Versions
All published versions of this germline set.
| Set Name | Species | Species subgroup | Locus | Release Version | Release Date | doi |
|---|---|---|---|---|---|---|
| IGKJ (all strains) | Mus musculus | IGK | 1 | 2022-05-31 | 10.5281/zenodo.7116926 |