{ "GermlineSet": [ { "germline_set_id": "OGRDB:G00039", "author": "Justin Kos", "lab_name": "University of Louisville School of Medicine", "lab_address": "University of Louisville, Louisville, KY 40202, USA", "acknowledgements": null, "release_version": 1, "release_description": "IGKV sequences as described in Kos et al. (2022)", "release_date": "2022-05-03", "germline_set_name": "NOD/ShiLtJ IGKV", "germline_set_ref": "OGRDB:NOD/ShiLtJ IGKV.1", "pub_ids": null, "species": { "id": "NCBITAXON:10090", "label": "Mus musculus" }, "species_subgroup": "NOD/ShiLtJ", "species_subgroup_type": "strain", "locus": "IGK", "allele_descriptions": [ { "allele_description_id": "OGRDB:A01694", "allele_description_ref": "OGRDB:Mus musculus/NOD/ShiLtJ_IGK:IGKV-2CNL.1", "maintainer": "William Lees", "acknowledgements": null, "lab_address": "Birkbeck College, University of London, Malet Street, London", "release_version": 1, "release_date": "03-May-2022", "release_description": "https://www.amazon.co.uk/Metre-Metal-Blocked-Unblocker-Cleaner/dp/B00UNGS08K/ref=sr_1_18?keywords=drain+unblocker&qid=1651577716&sprefix=drain%2Caps%2C68&sr=8-18", "label": "IGKV0-2CNL*00", "sequence": "CAAATTGTTCTCACCCAGTCTCCAGCAATCATGTCTGCATCTCCAGGGCAGAAAGTCACCATAACCTGCAGTGCCAGCTCAAGTGTAAATTACATGCACTGGTACCAGCAGAAGCTAGGATCCTCCCCCAAACTCTGGATTTATGACACATCCAAACTGGCTCCTGGAGTCCCTGCTCGCTTCAGTGGCAGTGGGTCTGGGACCTCTTACTCTCTCACAATCAGCAGCATGGAGGCTGAAGATGCTGCCTCTTATTTCTGCCATCAGTGGAGTAGTTACCCACCCA", "coding_sequence": "CAAATTGTTCTCACCCAGTCTCCAGCAATCATGTCTGCATCTCCAGGGCAGAAAGTCACCATAACCTGCAGTGCCAGCTCAAGTGTAAATTACATGCACTGGTACCAGCAGAAGCTAGGATCCTCCCCCAAACTCTGGATTTATGACACATCCAAACTGGCTCCTGGAGTCCCTGCTCGCTTCAGTGGCAGTGGGTCTGGGACCTCTTACTCTCTCACAATCAGCAGCATGGAGGCTGAAGATGCTGCCTCTTATTTCTGCCATCAGTGGAGTAGTTACCCACCCA", "ext_3prime": null, "aliases": [ "Kos et al: IGKV4-56*01_S5696_NOD" ], "locus": "IGK", "chromosome": null, "sequence_type": "V", "functional": true, "inference_type": "Rearranged only", "species": { "id": "NCBITAXON:10090", "label": "Mus musculus" }, "species_subgroup": "NOD/ShiLtJ", "species_subgroup_type": "strain", "status": null, "gene_designation": null, "subgroup_designation": null, "allele_designation": null, "allele_similarity_cluster_designation": null, "allele_similarity_cluster_member_id": null, "gene_start": 1, "gene_end": 286, "utr_5_prime_start": null, "utr_5_prime_end": null, "leader_1_start": null, "leader_1_end": null, "leader_2_start": null, "leader_2_end": null, "v_rs_start": null, "v_rs_end": null, "v_gene_delineations": [ { "sequence_delineation_id": "1", "delineation_scheme": "IMGT", "unaligned_sequence": "CAAATTGTTCTCACCCAGTCTCCAGCAATCATGTCTGCATCTCCAGGGCAGAAAGTCACCATAACCTGCAGTGCCAGCTCAAGTGTAAATTACATGCACTGGTACCAGCAGAAGCTAGGATCCTCCCCCAAACTCTGGATTTATGACACATCCAAACTGGCTCCTGGAGTCCCTGCTCGCTTCAGTGGCAGTGGGTCTGGGACCTCTTACTCTCTCACAATCAGCAGCATGGAGGCTGAAGATGCTGCCTCTTATTTCTGCCATCAGTGGAGTAGTTACCCACCCA", "aligned_sequence": "CAAATTGTTCTCACCCAGTCTCCAGCAATCATGTCTGCATCTCCAGGGCAGAAAGTCACCATAACCTGCAGTGCCAGCTCAAGTGTA.....................AATTACATGCACTGGTACCAGCAGAAGCTAGGATCCTCCCCCAAACTCTGGATTTATGACACA.....................TCCAAACTGGCTCCTGGAGTCCCT...GCTCGCTTCAGTGGCAGTGGG......TCTGGGACCTCTTACTCTCTCACAATCAGCAGCATGGAGGCTGAAGATGCTGCCTCTTATTTCTGCCATCAGTGGAGTAGTTACCCACCCA", "fwr1_start": 1, "fwr1_end": 78, "cdr1_start": 79, "cdr1_end": 93, "fwr2_start": 94, "fwr2_end": 144, "cdr2_start": 145, "cdr2_end": 153, "fwr3_start": 154, "fwr3_end": 261, "cdr3_start": 262, "alignment_labels": [ "1", "2", "3", "4", "5", "6", "7", "8", "9", "10", "11", "12", "13", "14", "15", "16", "17", "18", "19", "20", "21", "22", "23", "24", "25", "26", "27", "28", "29", "30", "31", "32", "33", "34", "35", "36", "37", "38", "39", "40", "41", "42", "43", "44", "45", "46", "47", "48", "49", "50", "51", "52", "53", "54", "55", "56", "57", "58", "59", "60", "61", "62", "63", "64", "65", "66", "67", "68", "69", "70", "71", "72", "73", "74", "75", "76", "77", "78", "79", "80", "81", "82", "83", "84", "85", "86", "87", "88", "89", "90", "91", "92", "93", "94", "95", "96", "97", "98", "99", "100", "101", "102", "103", "104" ] } ], "unrearranged_support": [], "rearranged_support": [], "paralogs": null, "curation": null, "curational_tags": null }, { "allele_description_id": "OGRDB:A01673", "allele_description_ref": "OGRDB:Mus musculus/NOD/ShiLtJ_IGK:IGKV-2DDX.1", "maintainer": "William Lees", "acknowledgements": null, "lab_address": "Birkbeck College, University of London, Malet Street, London", "release_version": 1, "release_date": "03-May-2022", "release_description": "https://www.amazon.co.uk/Metre-Metal-Blocked-Unblocker-Cleaner/dp/B00UNGS08K/ref=sr_1_18?keywords=drain+unblocker&qid=1651577716&sprefix=drain%2Caps%2C68&sr=8-18", "label": "IGKV0-2DDX*00", "sequence": "GACATCAAGATGACCCAGTCTCCATCCTCCATGTATGCATCGCTGGGAGAGAGAGTCACTATCACTTGCAAGGCGAGTCAGGACATTAAAAGCTATTTAAGCTGGTACCAGCAGAAACCATGGAAATCTCCTAAGACCCTGATCTATTATGCAACAAGCTTGGCAGATGGGGTCCCATCAAGATTCAGTGGCAGTGGATCTGGGCAAGATTATTCTCTAACCATCAGCAGCCTGGAGTCTGACGATACAGCAACTTATTACTGTCTACAGCATGGTGAGAGCCCTCC", "coding_sequence": "GACATCAAGATGACCCAGTCTCCATCCTCCATGTATGCATCGCTGGGAGAGAGAGTCACTATCACTTGCAAGGCGAGTCAGGACATTAAAAGCTATTTAAGCTGGTACCAGCAGAAACCATGGAAATCTCCTAAGACCCTGATCTATTATGCAACAAGCTTGGCAGATGGGGTCCCATCAAGATTCAGTGGCAGTGGATCTGGGCAAGATTATTCTCTAACCATCAGCAGCCTGGAGTCTGACGATACAGCAACTTATTACTGTCTACAGCATGGTGAGAGCCCTCC", "ext_3prime": null, "aliases": [ "Kos et al: IGKV14-126*01_NOD" ], "locus": "IGK", "chromosome": null, "sequence_type": "V", "functional": true, "inference_type": "Rearranged only", "species": { "id": "NCBITAXON:10090", "label": "Mus musculus" }, "species_subgroup": "NOD/ShiLtJ", "species_subgroup_type": "strain", "status": null, "gene_designation": null, "subgroup_designation": null, "allele_designation": null, "allele_similarity_cluster_designation": null, "allele_similarity_cluster_member_id": null, "gene_start": 1, "gene_end": 287, "utr_5_prime_start": null, "utr_5_prime_end": null, "leader_1_start": null, "leader_1_end": null, "leader_2_start": null, "leader_2_end": null, "v_rs_start": null, "v_rs_end": null, "v_gene_delineations": [ { "sequence_delineation_id": "1", "delineation_scheme": "IMGT", "unaligned_sequence": "GACATCAAGATGACCCAGTCTCCATCCTCCATGTATGCATCGCTGGGAGAGAGAGTCACTATCACTTGCAAGGCGAGTCAGGACATTAAAAGCTATTTAAGCTGGTACCAGCAGAAACCATGGAAATCTCCTAAGACCCTGATCTATTATGCAACAAGCTTGGCAGATGGGGTCCCATCAAGATTCAGTGGCAGTGGATCTGGGCAAGATTATTCTCTAACCATCAGCAGCCTGGAGTCTGACGATACAGCAACTTATTACTGTCTACAGCATGGTGAGAGCCCTCC", "aligned_sequence": "GACATCAAGATGACCCAGTCTCCATCCTCCATGTATGCATCGCTGGGAGAGAGAGTCACTATCACTTGCAAGGCGAGTCAGGACATT..................AAAAGCTATTTAAGCTGGTACCAGCAGAAACCATGGAAATCTCCTAAGACCCTGATCTATTATGCA.....................ACAAGCTTGGCAGATGGGGTCCCA...TCAAGATTCAGTGGCAGTGGA......TCTGGGCAAGATTATTCTCTAACCATCAGCAGCCTGGAGTCTGACGATACAGCAACTTATTACTGTCTACAGCATGGTGAGAGCCCTCC", "fwr1_start": 1, "fwr1_end": 78, "cdr1_start": 79, "cdr1_end": 96, "fwr2_start": 97, "fwr2_end": 147, "cdr2_start": 148, "cdr2_end": 156, "fwr3_start": 157, "fwr3_end": 264, "cdr3_start": 265, "alignment_labels": [ "1", "2", "3", "4", "5", "6", "7", "8", "9", "10", "11", "12", "13", "14", "15", "16", "17", "18", "19", "20", "21", "22", "23", "24", "25", "26", "27", "28", "29", "30", "31", "32", "33", "34", "35", "36", "37", "38", "39", "40", "41", "42", "43", "44", "45", "46", "47", "48", "49", "50", "51", "52", "53", "54", "55", "56", "57", "58", "59", "60", "61", "62", "63", "64", "65", "66", "67", "68", "69", "70", "71", "72", "73", "74", "75", "76", "77", "78", "79", "80", "81", "82", "83", "84", "85", "86", "87", "88", "89", "90", "91", "92", "93", "94", "95", "96", "97", "98", "99", "100", "101", "102", "103", "104" ] } ], "unrearranged_support": [], "rearranged_support": [], "paralogs": null, "curation": null, "curational_tags": null }, { "allele_description_id": "OGRDB:A01684", "allele_description_ref": "OGRDB:Mus musculus/NOD/ShiLtJ_IGK:IGKV-2JJG.1", "maintainer": "William Lees", "acknowledgements": null, "lab_address": "Birkbeck College, University of London, Malet Street, London", "release_version": 1, "release_date": "03-May-2022", "release_description": "https://www.amazon.co.uk/Metre-Metal-Blocked-Unblocker-Cleaner/dp/B00UNGS08K/ref=sr_1_18?keywords=drain+unblocker&qid=1651577716&sprefix=drain%2Caps%2C68&sr=8-18", "label": "IGKV0-2JJG*00", "sequence": "GACATTGTGATGACACAGTCTCCATCCTCCCTGGCTATGTCAGTAGGACAGAAGGTCACTATGAGCTGCAAGTCCAGTCAGAGCCTTTTAAGTAGTAGCAATCAAAAGAACTATTTGGCCTGGTACCAGCAGAAACCAGGACAGTCTCCTAAACTTCTGGTATACTTTGCATCCACTAGGGAATCTGGGGTCCCTGATCGCTTCATAGGCAGTGGATCTGGGACAGATTTCACTCTTACCATCAGCAGTGTGCAGGCTGAAGACCTGGCACTTTATTACTGTCAGCAACATTATAGCACTCCTCC", "coding_sequence": "GACATTGTGATGACACAGTCTCCATCCTCCCTGGCTATGTCAGTAGGACAGAAGGTCACTATGAGCTGCAAGTCCAGTCAGAGCCTTTTAAGTAGTAGCAATCAAAAGAACTATTTGGCCTGGTACCAGCAGAAACCAGGACAGTCTCCTAAACTTCTGGTATACTTTGCATCCACTAGGGAATCTGGGGTCCCTGATCGCTTCATAGGCAGTGGATCTGGGACAGATTTCACTCTTACCATCAGCAGTGTGCAGGCTGAAGACCTGGCACTTTATTACTGTCAGCAACATTATAGCACTCCTCC", "ext_3prime": null, "aliases": [ "Kos et al: IGKV8-24*01_S8843_NOD" ], "locus": "IGK", "chromosome": null, "sequence_type": "V", "functional": true, "inference_type": "Rearranged only", "species": { "id": "NCBITAXON:10090", "label": "Mus musculus" }, "species_subgroup": "NOD/ShiLtJ", "species_subgroup_type": "strain", "status": null, "gene_designation": null, "subgroup_designation": null, "allele_designation": null, "allele_similarity_cluster_designation": null, "allele_similarity_cluster_member_id": null, "gene_start": 1, "gene_end": 305, "utr_5_prime_start": null, "utr_5_prime_end": null, "leader_1_start": null, "leader_1_end": null, "leader_2_start": null, "leader_2_end": null, "v_rs_start": null, "v_rs_end": null, "v_gene_delineations": [ { "sequence_delineation_id": "1", "delineation_scheme": "IMGT", "unaligned_sequence": "GACATTGTGATGACACAGTCTCCATCCTCCCTGGCTATGTCAGTAGGACAGAAGGTCACTATGAGCTGCAAGTCCAGTCAGAGCCTTTTAAGTAGTAGCAATCAAAAGAACTATTTGGCCTGGTACCAGCAGAAACCAGGACAGTCTCCTAAACTTCTGGTATACTTTGCATCCACTAGGGAATCTGGGGTCCCTGATCGCTTCATAGGCAGTGGATCTGGGACAGATTTCACTCTTACCATCAGCAGTGTGCAGGCTGAAGACCTGGCACTTTATTACTGTCAGCAACATTATAGCACTCCTCC", "aligned_sequence": "GACATTGTGATGACACAGTCTCCATCCTCCCTGGCTATGTCAGTAGGACAGAAGGTCACTATGAGCTGCAAGTCCAGTCAGAGCCTTTTAAGTAGTAGCAATCAAAAGAACTATTTGGCCTGGTACCAGCAGAAACCAGGACAGTCTCCTAAACTTCTGGTATACTTTGCA.....................TCCACTAGGGAATCTGGGGTCCCT...GATCGCTTCATAGGCAGTGGA......TCTGGGACAGATTTCACTCTTACCATCAGCAGTGTGCAGGCTGAAGACCTGGCACTTTATTACTGTCAGCAACATTATAGCACTCCTCC", "fwr1_start": 1, "fwr1_end": 78, "cdr1_start": 79, "cdr1_end": 114, "fwr2_start": 115, "fwr2_end": 165, "cdr2_start": 166, "cdr2_end": 174, "fwr3_start": 175, "fwr3_end": 282, "cdr3_start": 283, "alignment_labels": [ "1", "2", "3", "4", "5", "6", "7", "8", "9", "10", "11", "12", "13", "14", "15", "16", "17", "18", "19", "20", "21", "22", "23", "24", "25", "26", "27", "28", "29", "30", "31", "32", "33", "34", "35", "36", "37", "38", "39", "40", "41", "42", "43", "44", "45", "46", "47", "48", "49", "50", "51", "52", "53", "54", "55", "56", "57", "58", "59", "60", "61", "62", "63", "64", "65", "66", "67", "68", "69", "70", "71", "72", "73", "74", "75", "76", "77", "78", "79", "80", "81", "82", "83", "84", "85", "86", "87", "88", "89", "90", "91", "92", "93", "94", "95", "96", "97", "98", "99", "100", "101", "102", "103", "104" ] } ], "unrearranged_support": [], "rearranged_support": [], "paralogs": null, "curation": null, "curational_tags": null }, { "allele_description_id": "OGRDB:A01696", "allele_description_ref": "OGRDB:Mus musculus/NOD/ShiLtJ_IGK:IGKV-37X2.1", "maintainer": "William Lees", "acknowledgements": null, "lab_address": "Birkbeck College, University of London, Malet Street, London", "release_version": 1, "release_date": "03-May-2022", "release_description": "https://www.amazon.co.uk/Metre-Metal-Blocked-Unblocker-Cleaner/dp/B00UNGS08K/ref=sr_1_18?keywords=drain+unblocker&qid=1651577716&sprefix=drain%2Caps%2C68&sr=8-18", "label": "IGKV0-37X2*00", "sequence": "CAAATTGTTCTCACCCAGTCTCCAGCAATCATGTCTGCATCTCCAGGGGAGAAGGTCACCATGACATGCAGTGCCAGCTCAAGTGTAAGTTACATGCACTGGTACCAGCAGAAGTCAGGCACCTCCCCCAAAAGATGGATTTATGACACATCCAAACTGGATTCTGGAGTCCCTGCTCGCTTCAGTGGCAGTGGGTCTGGGACCTCTTATTCTCTCACAATCAGCAGCATGGAGGCTGAAGATGCTGCCACTTATTACTGCTATCAGTGGAGTAGTTACCCACCCA", "coding_sequence": "CAAATTGTTCTCACCCAGTCTCCAGCAATCATGTCTGCATCTCCAGGGGAGAAGGTCACCATGACATGCAGTGCCAGCTCAAGTGTAAGTTACATGCACTGGTACCAGCAGAAGTCAGGCACCTCCCCCAAAAGATGGATTTATGACACATCCAAACTGGATTCTGGAGTCCCTGCTCGCTTCAGTGGCAGTGGGTCTGGGACCTCTTATTCTCTCACAATCAGCAGCATGGAGGCTGAAGATGCTGCCACTTATTACTGCTATCAGTGGAGTAGTTACCCACCCA", "ext_3prime": null, "aliases": [ "Kos et al: IGKV4-59*01_S1025_NOD" ], "locus": "IGK", "chromosome": null, "sequence_type": "V", "functional": true, "inference_type": "Rearranged only", "species": { "id": "NCBITAXON:10090", "label": "Mus musculus" }, "species_subgroup": "NOD/ShiLtJ", "species_subgroup_type": "strain", "status": null, "gene_designation": null, "subgroup_designation": null, "allele_designation": null, "allele_similarity_cluster_designation": null, "allele_similarity_cluster_member_id": null, "gene_start": 1, "gene_end": 286, "utr_5_prime_start": null, "utr_5_prime_end": null, "leader_1_start": null, "leader_1_end": null, "leader_2_start": null, "leader_2_end": null, "v_rs_start": null, "v_rs_end": null, "v_gene_delineations": [ { "sequence_delineation_id": "1", "delineation_scheme": "IMGT", "unaligned_sequence": "CAAATTGTTCTCACCCAGTCTCCAGCAATCATGTCTGCATCTCCAGGGGAGAAGGTCACCATGACATGCAGTGCCAGCTCAAGTGTAAGTTACATGCACTGGTACCAGCAGAAGTCAGGCACCTCCCCCAAAAGATGGATTTATGACACATCCAAACTGGATTCTGGAGTCCCTGCTCGCTTCAGTGGCAGTGGGTCTGGGACCTCTTATTCTCTCACAATCAGCAGCATGGAGGCTGAAGATGCTGCCACTTATTACTGCTATCAGTGGAGTAGTTACCCACCCA", "aligned_sequence": "CAAATTGTTCTCACCCAGTCTCCAGCAATCATGTCTGCATCTCCAGGGGAGAAGGTCACCATGACATGCAGTGCCAGCTCAAGTGTA.....................AGTTACATGCACTGGTACCAGCAGAAGTCAGGCACCTCCCCCAAAAGATGGATTTATGACACA.....................TCCAAACTGGATTCTGGAGTCCCT...GCTCGCTTCAGTGGCAGTGGG......TCTGGGACCTCTTATTCTCTCACAATCAGCAGCATGGAGGCTGAAGATGCTGCCACTTATTACTGCTATCAGTGGAGTAGTTACCCACCCA", "fwr1_start": 1, "fwr1_end": 78, "cdr1_start": 79, "cdr1_end": 93, "fwr2_start": 94, "fwr2_end": 144, "cdr2_start": 145, "cdr2_end": 153, "fwr3_start": 154, "fwr3_end": 261, "cdr3_start": 262, "alignment_labels": [ "1", "2", "3", "4", "5", "6", "7", "8", "9", "10", "11", "12", "13", "14", "15", "16", "17", "18", "19", "20", "21", "22", "23", "24", "25", "26", "27", "28", "29", "30", "31", "32", "33", "34", "35", "36", "37", "38", "39", "40", "41", "42", "43", "44", "45", "46", "47", "48", "49", "50", "51", "52", "53", "54", "55", "56", "57", "58", "59", "60", "61", "62", "63", "64", "65", "66", "67", "68", "69", "70", "71", "72", "73", "74", "75", "76", "77", "78", "79", "80", "81", "82", "83", "84", "85", "86", "87", "88", "89", "90", "91", "92", "93", "94", "95", "96", "97", "98", "99", "100", "101", "102", "103", "104" ] } ], "unrearranged_support": [], "rearranged_support": [], "paralogs": null, "curation": null, "curational_tags": null }, { "allele_description_id": "OGRDB:A01717", "allele_description_ref": "OGRDB:Mus musculus/NOD/ShiLtJ_IGK:IGKV-3C77.1", "maintainer": "William Lees", "acknowledgements": null, "lab_address": "Birkbeck College, University of London, Malet Street, London", "release_version": 1, "release_date": "03-May-2022", "release_description": "https://www.amazon.co.uk/Metre-Metal-Blocked-Unblocker-Cleaner/dp/B00UNGS08K/ref=sr_1_18?keywords=drain+unblocker&qid=1651577716&sprefix=drain%2Caps%2C68&sr=8-18", "label": "IGKV0-3C77*00", "sequence": "GAAACAACTGTGACCCAGTCTCCAGCATCCCTGTCCGTGGCTACAGGAGAAAAAGTCACTATCAGATGCATAACCAACACTGATATTGATGATGATATGAACTGGTACCAGCAGAAGCCAGGGGAACCTCCTAAGCTCCTTATTTCAGAAGGCAATACTCTTCGTCCTGGAGTCCCATCCCGATTCTCCAGCAGTGGCTATGGCACAGATTTTGTTTTTACAATTGAAAACACGCTCTCAGAAGATGTTGCAGATTACTACTGTTTGCAAAGTGATAACATGCCTCT", "coding_sequence": "GAAACAACTGTGACCCAGTCTCCAGCATCCCTGTCCGTGGCTACAGGAGAAAAAGTCACTATCAGATGCATAACCAACACTGATATTGATGATGATATGAACTGGTACCAGCAGAAGCCAGGGGAACCTCCTAAGCTCCTTATTTCAGAAGGCAATACTCTTCGTCCTGGAGTCCCATCCCGATTCTCCAGCAGTGGCTATGGCACAGATTTTGTTTTTACAATTGAAAACACGCTCTCAGAAGATGTTGCAGATTACTACTGTTTGCAAAGTGATAACATGCCTCT", "ext_3prime": null, "aliases": [ "Kos et al: IGKV17-127*01_S4378_NOD" ], "locus": "IGK", "chromosome": null, "sequence_type": "V", "functional": true, "inference_type": "Rearranged only", "species": { "id": "NCBITAXON:10090", "label": "Mus musculus" }, "species_subgroup": "NOD/ShiLtJ", "species_subgroup_type": "strain", "status": null, "gene_designation": null, "subgroup_designation": null, "allele_designation": null, "allele_similarity_cluster_designation": null, "allele_similarity_cluster_member_id": null, "gene_start": 1, "gene_end": 287, "utr_5_prime_start": null, "utr_5_prime_end": null, "leader_1_start": null, "leader_1_end": null, "leader_2_start": null, "leader_2_end": null, "v_rs_start": null, "v_rs_end": null, "v_gene_delineations": [ { "sequence_delineation_id": "1", "delineation_scheme": "IMGT", "unaligned_sequence": "GAAACAACTGTGACCCAGTCTCCAGCATCCCTGTCCGTGGCTACAGGAGAAAAAGTCACTATCAGATGCATAACCAACACTGATATTGATGATGATATGAACTGGTACCAGCAGAAGCCAGGGGAACCTCCTAAGCTCCTTATTTCAGAAGGCAATACTCTTCGTCCTGGAGTCCCATCCCGATTCTCCAGCAGTGGCTATGGCACAGATTTTGTTTTTACAATTGAAAACACGCTCTCAGAAGATGTTGCAGATTACTACTGTTTGCAAAGTGATAACATGCCTCT", "aligned_sequence": "GAAACAACTGTGACCCAGTCTCCAGCATCCCTGTCCGTGGCTACAGGAGAAAAAGTCACTATCAGATGCATAACCAACACTGATATT..................GATGATGATATGAACTGGTACCAGCAGAAGCCAGGGGAACCTCCTAAGCTCCTTATTTCAGAAGGC.....................AATACTCTTCGTCCTGGAGTCCCA...TCCCGATTCTCCAGCAGTGGC......TATGGCACAGATTTTGTTTTTACAATTGAAAACACGCTCTCAGAAGATGTTGCAGATTACTACTGTTTGCAAAGTGATAACATGCCTCT", "fwr1_start": 1, "fwr1_end": 78, "cdr1_start": 79, "cdr1_end": 96, "fwr2_start": 97, "fwr2_end": 147, "cdr2_start": 148, "cdr2_end": 156, "fwr3_start": 157, "fwr3_end": 264, "cdr3_start": 265, "alignment_labels": [ "1", "2", "3", "4", "5", "6", "7", "8", "9", "10", "11", "12", "13", "14", "15", "16", "17", "18", "19", "20", "21", "22", "23", "24", "25", "26", "27", "28", "29", "30", "31", "32", "33", "34", "35", "36", "37", "38", "39", "40", "41", "42", "43", "44", "45", "46", "47", "48", "49", "50", "51", "52", "53", "54", "55", "56", "57", "58", "59", "60", "61", "62", "63", "64", "65", "66", "67", "68", "69", "70", "71", "72", "73", "74", "75", "76", "77", "78", "79", "80", "81", "82", "83", "84", "85", "86", "87", "88", "89", "90", "91", "92", "93", "94", "95", "96", "97", "98", "99", "100", "101", "102", "103", "104" ] } ], "unrearranged_support": [], "rearranged_support": [], "paralogs": null, "curation": null, "curational_tags": null }, { "allele_description_id": "OGRDB:A01699", "allele_description_ref": "OGRDB:Mus musculus/NOD/ShiLtJ_IGK:IGKV-47ZO.1", "maintainer": "William Lees", "acknowledgements": null, "lab_address": "Birkbeck College, University of London, Malet Street, London", "release_version": 1, "release_date": "03-May-2022", "release_description": "https://www.amazon.co.uk/Metre-Metal-Blocked-Unblocker-Cleaner/dp/B00UNGS08K/ref=sr_1_18?keywords=drain+unblocker&qid=1651577716&sprefix=drain%2Caps%2C68&sr=8-18", "label": "IGKV0-47ZO*00", "sequence": "GACATTGTGCTGACCCAATCTCCAGCTTCTTTGGCTGTGTCTCTAGGGCAGAGGGCCACCATCTCCTGCAGAGCCAGCGAAAGTGTTGATTATGATGGCGATAGTTATATGAACTGGTACCAACAGAAACCAGGACAGCCACCGAAACTCCTCATCTATGCTGCATCCAATCTAGAATCTGGGATCCCTGCCAGGTTTAGTGGCAGTGGGTCTGGGACAGACTTCACCCTCAACATTCATCCTGTGGAGGAGGAGGATGCTGCAACCTATTACTGTCTGCAAAGTAATGAGGCTCCTC", "coding_sequence": "GACATTGTGCTGACCCAATCTCCAGCTTCTTTGGCTGTGTCTCTAGGGCAGAGGGCCACCATCTCCTGCAGAGCCAGCGAAAGTGTTGATTATGATGGCGATAGTTATATGAACTGGTACCAACAGAAACCAGGACAGCCACCGAAACTCCTCATCTATGCTGCATCCAATCTAGAATCTGGGATCCCTGCCAGGTTTAGTGGCAGTGGGTCTGGGACAGACTTCACCCTCAACATTCATCCTGTGGAGGAGGAGGATGCTGCAACCTATTACTGTCTGCAAAGTAATGAGGCTCCTC", "ext_3prime": null, "aliases": [ "Kos et al: IGKV3-4*01_S9382_NOD" ], "locus": "IGK", "chromosome": null, "sequence_type": "V", "functional": true, "inference_type": "Rearranged only", "species": { "id": "NCBITAXON:10090", "label": "Mus musculus" }, "species_subgroup": "NOD/ShiLtJ", "species_subgroup_type": "strain", "status": null, "gene_designation": null, "subgroup_designation": null, "allele_designation": null, "allele_similarity_cluster_designation": null, "allele_similarity_cluster_member_id": null, "gene_start": 1, "gene_end": 298, "utr_5_prime_start": null, "utr_5_prime_end": null, "leader_1_start": null, "leader_1_end": null, "leader_2_start": null, "leader_2_end": null, "v_rs_start": null, "v_rs_end": null, "v_gene_delineations": [ { "sequence_delineation_id": "1", "delineation_scheme": "IMGT", "unaligned_sequence": "GACATTGTGCTGACCCAATCTCCAGCTTCTTTGGCTGTGTCTCTAGGGCAGAGGGCCACCATCTCCTGCAGAGCCAGCGAAAGTGTTGATTATGATGGCGATAGTTATATGAACTGGTACCAACAGAAACCAGGACAGCCACCGAAACTCCTCATCTATGCTGCATCCAATCTAGAATCTGGGATCCCTGCCAGGTTTAGTGGCAGTGGGTCTGGGACAGACTTCACCCTCAACATTCATCCTGTGGAGGAGGAGGATGCTGCAACCTATTACTGTCTGCAAAGTAATGAGGCTCCTC", "aligned_sequence": "GACATTGTGCTGACCCAATCTCCAGCTTCTTTGGCTGTGTCTCTAGGGCAGAGGGCCACCATCTCCTGCAGAGCCAGCGAAAGTGTTGATTAT......GATGGCGATAGTTATATGAACTGGTACCAACAGAAACCAGGACAGCCACCGAAACTCCTCATCTATGCTGCA.....................TCCAATCTAGAATCTGGGATCCCT...GCCAGGTTTAGTGGCAGTGGG......TCTGGGACAGACTTCACCCTCAACATTCATCCTGTGGAGGAGGAGGATGCTGCAACCTATTACTGTCTGCAAAGTAATGAGGCTCCTC", "fwr1_start": 1, "fwr1_end": 78, "cdr1_start": 79, "cdr1_end": 108, "fwr2_start": 109, "fwr2_end": 159, "cdr2_start": 160, "cdr2_end": 168, "fwr3_start": 169, "fwr3_end": 276, "cdr3_start": 277, "alignment_labels": [ "1", "2", "3", "4", "5", "6", "7", "8", "9", "10", "11", "12", "13", "14", "15", "16", "17", "18", "19", "20", "21", "22", "23", "24", "25", "26", "27", "28", "29", "30", "31", "32", "33", "34", "35", "36", "37", "38", "39", "40", "41", "42", "43", "44", "45", "46", "47", "48", "49", "50", "51", "52", "53", "54", "55", "56", "57", "58", "59", "60", "61", "62", "63", "64", "65", "66", "67", "68", "69", "70", "71", "72", "73", "74", "75", "76", "77", "78", "79", "80", "81", "82", "83", "84", "85", "86", "87", "88", "89", "90", "91", "92", "93", "94", "95", "96", "97", "98", "99", "100", "101", "102", "103", "104" ] } ], "unrearranged_support": [], "rearranged_support": [], "paralogs": null, "curation": null, "curational_tags": null }, { "allele_description_id": "OGRDB:A01680", "allele_description_ref": "OGRDB:Mus musculus/NOD/ShiLtJ_IGK:IGKV-4HZA.1", "maintainer": "William Lees", "acknowledgements": null, "lab_address": "Birkbeck College, University of London, Malet Street, London", "release_version": 1, "release_date": "03-May-2022", "release_description": "https://www.amazon.co.uk/Metre-Metal-Blocked-Unblocker-Cleaner/dp/B00UNGS08K/ref=sr_1_18?keywords=drain+unblocker&qid=1651577716&sprefix=drain%2Caps%2C68&sr=8-18", "label": "IGKV0-4HZA*00", "sequence": "GATGTTGTGATGACCCAGACTCCACTGTCTTTGTCGGTTACCATTGGACAACCAGCCTCCATCTCTTGCAAGTCAAGTCAGAGCCTCTTACATAGTGATGGAAAGACATATTTGAATTGGTTATTACAGAGGCCAGGCCAGTCTCCAAAGCTCCTAATCTATCTGGTGTCTAAACTGGAATCTGGCATCCCTGACAGGTTCAGTGGCAGTGGATCAGGGACAGATTTCACACTGAAAATCAGCAGAGTGGAGGTTGAGGATTTGGGAGTTTATTACTGCTTGCAACATACACATTTTCCTCA", "coding_sequence": "GATGTTGTGATGACCCAGACTCCACTGTCTTTGTCGGTTACCATTGGACAACCAGCCTCCATCTCTTGCAAGTCAAGTCAGAGCCTCTTACATAGTGATGGAAAGACATATTTGAATTGGTTATTACAGAGGCCAGGCCAGTCTCCAAAGCTCCTAATCTATCTGGTGTCTAAACTGGAATCTGGCATCCCTGACAGGTTCAGTGGCAGTGGATCAGGGACAGATTTCACACTGAAAATCAGCAGAGTGGAGGTTGAGGATTTGGGAGTTTATTACTGCTTGCAACATACACATTTTCCTCA", "ext_3prime": null, "aliases": [ "Kos et al: IGKV1-135*01_S7405_NOD" ], "locus": "IGK", "chromosome": null, "sequence_type": "V", "functional": true, "inference_type": "Rearranged only", "species": { "id": "NCBITAXON:10090", "label": "Mus musculus" }, "species_subgroup": "NOD/ShiLtJ", "species_subgroup_type": "strain", "status": null, "gene_designation": null, "subgroup_designation": null, "allele_designation": null, "allele_similarity_cluster_designation": null, "allele_similarity_cluster_member_id": null, "gene_start": 1, "gene_end": 302, "utr_5_prime_start": null, "utr_5_prime_end": null, "leader_1_start": null, "leader_1_end": null, "leader_2_start": null, "leader_2_end": null, "v_rs_start": null, "v_rs_end": null, "v_gene_delineations": [ { "sequence_delineation_id": "1", "delineation_scheme": "IMGT", "unaligned_sequence": "GATGTTGTGATGACCCAGACTCCACTGTCTTTGTCGGTTACCATTGGACAACCAGCCTCCATCTCTTGCAAGTCAAGTCAGAGCCTCTTACATAGTGATGGAAAGACATATTTGAATTGGTTATTACAGAGGCCAGGCCAGTCTCCAAAGCTCCTAATCTATCTGGTGTCTAAACTGGAATCTGGCATCCCTGACAGGTTCAGTGGCAGTGGATCAGGGACAGATTTCACACTGAAAATCAGCAGAGTGGAGGTTGAGGATTTGGGAGTTTATTACTGCTTGCAACATACACATTTTCCTCA", "aligned_sequence": "GATGTTGTGATGACCCAGACTCCACTGTCTTTGTCGGTTACCATTGGACAACCAGCCTCCATCTCTTGCAAGTCAAGTCAGAGCCTCTTACATAGT...GATGGAAAGACATATTTGAATTGGTTATTACAGAGGCCAGGCCAGTCTCCAAAGCTCCTAATCTATCTGGTG.....................TCTAAACTGGAATCTGGCATCCCT...GACAGGTTCAGTGGCAGTGGA......TCAGGGACAGATTTCACACTGAAAATCAGCAGAGTGGAGGTTGAGGATTTGGGAGTTTATTACTGCTTGCAACATACACATTTTCCTCA", "fwr1_start": 1, "fwr1_end": 78, "cdr1_start": 79, "cdr1_end": 111, "fwr2_start": 112, "fwr2_end": 162, "cdr2_start": 163, "cdr2_end": 171, "fwr3_start": 172, "fwr3_end": 279, "cdr3_start": 280, "alignment_labels": [ "1", "2", "3", "4", "5", "6", "7", "8", "9", "10", "11", "12", "13", "14", "15", "16", "17", "18", "19", "20", "21", "22", "23", "24", "25", "26", "27", "28", "29", "30", "31", "32", "33", "34", "35", "36", "37", "38", "39", "40", "41", "42", "43", "44", "45", "46", "47", "48", "49", "50", "51", "52", "53", "54", "55", "56", "57", "58", "59", "60", "61", "62", "63", "64", "65", "66", "67", "68", "69", "70", "71", "72", "73", "74", "75", "76", "77", "78", "79", "80", "81", "82", "83", "84", "85", "86", "87", "88", "89", "90", "91", "92", "93", "94", "95", "96", "97", "98", "99", "100", "101", "102", "103", "104" ] } ], "unrearranged_support": [], "rearranged_support": [], "paralogs": null, "curation": null, "curational_tags": null }, { "allele_description_id": "OGRDB:A01726", "allele_description_ref": "OGRDB:Mus musculus/NOD/ShiLtJ_IGK:IGKV-5PNC.1", "maintainer": "William Lees", "acknowledgements": null, "lab_address": "Birkbeck College, University of London, Malet Street, London", "release_version": 1, "release_date": "03-May-2022", "release_description": "https://www.amazon.co.uk/Metre-Metal-Blocked-Unblocker-Cleaner/dp/B00UNGS08K/ref=sr_1_18?keywords=drain+unblocker&qid=1651577716&sprefix=drain%2Caps%2C68&sr=8-18", "label": "IGKV0-5PNC*00", "sequence": "AACATTATGATGACACAGTCGCCATCATCTCTGGCTGTGTCTGCAGGAGAAAAGGTCACTATGAGCTGTAAGTCCAGTCAAAGTGTTTTATACAGTTCAAATCAGAAGAACTACTTGGCCTGGTACCAGCAGAAACCAGGGCAGTCTCCTAAACTGCTGATCTACTGGGCATCCACTAGGGAATCTGGTGTCCCTGATCGCTTCACAGGCAGTGGATCTGGGACAGATTTTACTCTTACCATCAGCAGTGTACAAGCTGAAGACCTGGCAGTTTATTACTGTCATCAATACCTCTCCTCG", "coding_sequence": "AACATTATGATGACACAGTCGCCATCATCTCTGGCTGTGTCTGCAGGAGAAAAGGTCACTATGAGCTGTAAGTCCAGTCAAAGTGTTTTATACAGTTCAAATCAGAAGAACTACTTGGCCTGGTACCAGCAGAAACCAGGGCAGTCTCCTAAACTGCTGATCTACTGGGCATCCACTAGGGAATCTGGTGTCCCTGATCGCTTCACAGGCAGTGGATCTGGGACAGATTTTACTCTTACCATCAGCAGTGTACAAGCTGAAGACCTGGCAGTTTATTACTGTCATCAATACCTCTCCTCG", "ext_3prime": null, "aliases": [ "Kos et al: IGKV8-27*01_NOD" ], "locus": "IGK", "chromosome": null, "sequence_type": "V", "functional": true, "inference_type": "Rearranged only", "species": { "id": "NCBITAXON:10090", "label": "Mus musculus" }, "species_subgroup": "NOD/ShiLtJ", "species_subgroup_type": "strain", "status": null, "gene_designation": null, "subgroup_designation": null, "allele_designation": null, "allele_similarity_cluster_designation": null, "allele_similarity_cluster_member_id": null, "gene_start": 1, "gene_end": 300, "utr_5_prime_start": null, "utr_5_prime_end": null, "leader_1_start": null, "leader_1_end": null, "leader_2_start": null, "leader_2_end": null, "v_rs_start": null, "v_rs_end": null, "v_gene_delineations": [ { "sequence_delineation_id": "1", "delineation_scheme": "IMGT", "unaligned_sequence": "AACATTATGATGACACAGTCGCCATCATCTCTGGCTGTGTCTGCAGGAGAAAAGGTCACTATGAGCTGTAAGTCCAGTCAAAGTGTTTTATACAGTTCAAATCAGAAGAACTACTTGGCCTGGTACCAGCAGAAACCAGGGCAGTCTCCTAAACTGCTGATCTACTGGGCATCCACTAGGGAATCTGGTGTCCCTGATCGCTTCACAGGCAGTGGATCTGGGACAGATTTTACTCTTACCATCAGCAGTGTACAAGCTGAAGACCTGGCAGTTTATTACTGTCATCAATACCTCTCCTCG", "aligned_sequence": "AACATTATGATGACACAGTCGCCATCATCTCTGGCTGTGTCTGCAGGAGAAAAGGTCACTATGAGCTGTAAGTCCAGTCAAAGTGTTTTATACAGTTCAAATCAGAAGAACTACTTGGCCTGGTACCAGCAGAAACCAGGGCAGTCTCCTAAACTGCTGATCTACTGGGCA.....................TCCACTAGGGAATCTGGTGTCCCT...GATCGCTTCACAGGCAGTGGA......TCTGGGACAGATTTTACTCTTACCATCAGCAGTGTACAAGCTGAAGACCTGGCAGTTTATTACTGTCATCAATACCTCTCCTCG", "fwr1_start": 1, "fwr1_end": 78, "cdr1_start": 79, "cdr1_end": 114, "fwr2_start": 115, "fwr2_end": 165, "cdr2_start": 166, "cdr2_end": 174, "fwr3_start": 175, "fwr3_end": 282, "cdr3_start": 283, "alignment_labels": [ "1", "2", "3", "4", "5", "6", "7", "8", "9", "10", "11", "12", "13", "14", "15", "16", "17", "18", "19", "20", "21", "22", "23", "24", "25", "26", "27", "28", "29", "30", "31", "32", "33", "34", "35", "36", "37", "38", "39", "40", "41", "42", "43", "44", "45", "46", "47", "48", "49", "50", "51", "52", "53", "54", "55", "56", "57", "58", "59", "60", "61", "62", "63", "64", "65", "66", "67", "68", "69", "70", "71", "72", "73", "74", "75", "76", "77", "78", "79", "80", "81", "82", "83", "84", "85", "86", "87", "88", "89", "90", "91", "92", "93", "94", "95", "96", "97", "98", "99", "100", "101", "102", "103", "104" ] } ], "unrearranged_support": [], "rearranged_support": [], "paralogs": null, "curation": null, "curational_tags": null }, { "allele_description_id": "OGRDB:A01713", "allele_description_ref": "OGRDB:Mus musculus/NOD/ShiLtJ_IGK:IGKV-5TR5.1", "maintainer": "William Lees", "acknowledgements": null, "lab_address": "Birkbeck College, University of London, Malet Street, London", "release_version": 1, "release_date": "03-May-2022", "release_description": "https://www.amazon.co.uk/Metre-Metal-Blocked-Unblocker-Cleaner/dp/B00UNGS08K/ref=sr_1_18?keywords=drain+unblocker&qid=1651577716&sprefix=drain%2Caps%2C68&sr=8-18", "label": "IGKV0-5TR5*00", "sequence": "GACATTGTGATGACACAGTCTCCATCCTCCCTGAGTGTGTCAGCAGGAGATAAGGTCACTATGAGCTGCAAGTCCAGTCAGAGTCTGTTAAACAGTAGAAACCAAAAGAACTACTTGGCCTGGTACCAGCAGAAACCATGGCAGCCTCCTAAACTGCTGATCTACGGGGCATCCACTAGGGAATCTGGGGTCCCTGATCGCTTCACAGGCAGTGGATCTGGAACAGATTTCACTCTCACCATCAGCAGTGTGCAGGCTGAAGACCTGGCAGTTTATTACTGTCAGAATGATTATAGTTATCC", "coding_sequence": "GACATTGTGATGACACAGTCTCCATCCTCCCTGAGTGTGTCAGCAGGAGATAAGGTCACTATGAGCTGCAAGTCCAGTCAGAGTCTGTTAAACAGTAGAAACCAAAAGAACTACTTGGCCTGGTACCAGCAGAAACCATGGCAGCCTCCTAAACTGCTGATCTACGGGGCATCCACTAGGGAATCTGGGGTCCCTGATCGCTTCACAGGCAGTGGATCTGGAACAGATTTCACTCTCACCATCAGCAGTGTGCAGGCTGAAGACCTGGCAGTTTATTACTGTCAGAATGATTATAGTTATCC", "ext_3prime": null, "aliases": [ "Kos et al: IGKV8-28*02_NOD" ], "locus": "IGK", "chromosome": null, "sequence_type": "V", "functional": true, "inference_type": "Rearranged only", "species": { "id": "NCBITAXON:10090", "label": "Mus musculus" }, "species_subgroup": "NOD/ShiLtJ", "species_subgroup_type": "strain", "status": null, "gene_designation": null, "subgroup_designation": null, "allele_designation": null, "allele_similarity_cluster_designation": null, "allele_similarity_cluster_member_id": null, "gene_start": 1, "gene_end": 302, "utr_5_prime_start": null, "utr_5_prime_end": null, "leader_1_start": null, "leader_1_end": null, "leader_2_start": null, "leader_2_end": null, "v_rs_start": null, "v_rs_end": null, "v_gene_delineations": [ { "sequence_delineation_id": "1", "delineation_scheme": "IMGT", "unaligned_sequence": "GACATTGTGATGACACAGTCTCCATCCTCCCTGAGTGTGTCAGCAGGAGATAAGGTCACTATGAGCTGCAAGTCCAGTCAGAGTCTGTTAAACAGTAGAAACCAAAAGAACTACTTGGCCTGGTACCAGCAGAAACCATGGCAGCCTCCTAAACTGCTGATCTACGGGGCATCCACTAGGGAATCTGGGGTCCCTGATCGCTTCACAGGCAGTGGATCTGGAACAGATTTCACTCTCACCATCAGCAGTGTGCAGGCTGAAGACCTGGCAGTTTATTACTGTCAGAATGATTATAGTTATCC", "aligned_sequence": "GACATTGTGATGACACAGTCTCCATCCTCCCTGAGTGTGTCAGCAGGAGATAAGGTCACTATGAGCTGCAAGTCCAGTCAGAGTCTGTTAAACAGTAGAAACCAAAAGAACTACTTGGCCTGGTACCAGCAGAAACCATGGCAGCCTCCTAAACTGCTGATCTACGGGGCA.....................TCCACTAGGGAATCTGGGGTCCCT...GATCGCTTCACAGGCAGTGGA......TCTGGAACAGATTTCACTCTCACCATCAGCAGTGTGCAGGCTGAAGACCTGGCAGTTTATTACTGTCAGAATGATTATAGTTATCC", "fwr1_start": 1, "fwr1_end": 78, "cdr1_start": 79, "cdr1_end": 114, "fwr2_start": 115, "fwr2_end": 165, "cdr2_start": 166, "cdr2_end": 174, "fwr3_start": 175, "fwr3_end": 282, "cdr3_start": 283, "alignment_labels": [ "1", "2", "3", "4", "5", "6", "7", "8", "9", "10", "11", "12", "13", "14", "15", "16", "17", "18", "19", "20", "21", "22", "23", "24", "25", "26", "27", "28", "29", "30", "31", "32", "33", "34", "35", "36", "37", "38", "39", "40", "41", "42", "43", "44", "45", "46", "47", "48", "49", "50", "51", "52", "53", "54", "55", "56", "57", "58", "59", "60", "61", "62", "63", "64", "65", "66", "67", "68", "69", "70", "71", "72", "73", "74", "75", "76", "77", "78", "79", "80", "81", "82", "83", "84", "85", "86", "87", "88", "89", "90", "91", "92", "93", "94", "95", "96", "97", "98", "99", "100", "101", "102", "103", "104" ] } ], "unrearranged_support": [], "rearranged_support": [], "paralogs": null, "curation": null, "curational_tags": null }, { "allele_description_id": "OGRDB:A01709", "allele_description_ref": "OGRDB:Mus musculus/NOD/ShiLtJ_IGK:IGKV-5YKD.1", "maintainer": "William Lees", "acknowledgements": null, "lab_address": "Birkbeck College, University of London, Malet Street, London", "release_version": 1, "release_date": "03-May-2022", "release_description": "https://www.amazon.co.uk/Metre-Metal-Blocked-Unblocker-Cleaner/dp/B00UNGS08K/ref=sr_1_18?keywords=drain+unblocker&qid=1651577716&sprefix=drain%2Caps%2C68&sr=8-18", "label": "IGKV0-5YKD*00", "sequence": "GATATCCAGATGACACAGACTACATCCTCCCTGTCTGCCTCTCTGGGAGACAGAGTCACCATCAGTTGCAGGGCAAGTCAGGACATTAGCAATTATTTAAACTGGTATCAGCAGAAACCAGATGGAACTGTTAAACTCCTGATCTACTACACATCAAGATTACACTCAGGAGTCCCATCAAGGTTCAGTGGCAGTGGGTCTGGGACAGATTATTCTCTCACTATTAGCAACCTGGAACAAGAAGATATTGCCACTTACTTTTGCCAACAGGATAGTAAGCATCCTCC", "coding_sequence": "GATATCCAGATGACACAGACTACATCCTCCCTGTCTGCCTCTCTGGGAGACAGAGTCACCATCAGTTGCAGGGCAAGTCAGGACATTAGCAATTATTTAAACTGGTATCAGCAGAAACCAGATGGAACTGTTAAACTCCTGATCTACTACACATCAAGATTACACTCAGGAGTCCCATCAAGGTTCAGTGGCAGTGGGTCTGGGACAGATTATTCTCTCACTATTAGCAACCTGGAACAAGAAGATATTGCCACTTACTTTTGCCAACAGGATAGTAAGCATCCTCC", "ext_3prime": null, "aliases": [ "Kos et al: IGKV10-96*03_NOD" ], "locus": "IGK", "chromosome": null, "sequence_type": "V", "functional": true, "inference_type": "Rearranged only", "species": { "id": "NCBITAXON:10090", "label": "Mus musculus" }, "species_subgroup": "NOD/ShiLtJ", "species_subgroup_type": "strain", "status": null, "gene_designation": null, "subgroup_designation": null, "allele_designation": null, "allele_similarity_cluster_designation": null, "allele_similarity_cluster_member_id": null, "gene_start": 1, "gene_end": 287, "utr_5_prime_start": null, "utr_5_prime_end": null, "leader_1_start": null, "leader_1_end": null, "leader_2_start": null, "leader_2_end": null, "v_rs_start": null, "v_rs_end": null, "v_gene_delineations": [ { "sequence_delineation_id": "1", "delineation_scheme": "IMGT", "unaligned_sequence": "GATATCCAGATGACACAGACTACATCCTCCCTGTCTGCCTCTCTGGGAGACAGAGTCACCATCAGTTGCAGGGCAAGTCAGGACATTAGCAATTATTTAAACTGGTATCAGCAGAAACCAGATGGAACTGTTAAACTCCTGATCTACTACACATCAAGATTACACTCAGGAGTCCCATCAAGGTTCAGTGGCAGTGGGTCTGGGACAGATTATTCTCTCACTATTAGCAACCTGGAACAAGAAGATATTGCCACTTACTTTTGCCAACAGGATAGTAAGCATCCTCC", "aligned_sequence": "GATATCCAGATGACACAGACTACATCCTCCCTGTCTGCCTCTCTGGGAGACAGAGTCACCATCAGTTGCAGGGCAAGTCAGGACATT..................AGCAATTATTTAAACTGGTATCAGCAGAAACCAGATGGAACTGTTAAACTCCTGATCTACTACACA.....................TCAAGATTACACTCAGGAGTCCCA...TCAAGGTTCAGTGGCAGTGGG......TCTGGGACAGATTATTCTCTCACTATTAGCAACCTGGAACAAGAAGATATTGCCACTTACTTTTGCCAACAGGATAGTAAGCATCCTCC", "fwr1_start": 1, "fwr1_end": 78, "cdr1_start": 79, "cdr1_end": 96, "fwr2_start": 97, "fwr2_end": 147, "cdr2_start": 148, "cdr2_end": 156, "fwr3_start": 157, "fwr3_end": 264, "cdr3_start": 265, "alignment_labels": [ "1", "2", "3", "4", "5", "6", "7", "8", "9", "10", "11", "12", "13", "14", "15", "16", "17", "18", "19", "20", "21", "22", "23", "24", "25", "26", "27", "28", "29", "30", "31", "32", "33", "34", "35", "36", "37", "38", "39", "40", "41", "42", "43", "44", "45", "46", "47", "48", "49", "50", "51", "52", "53", "54", "55", "56", "57", "58", "59", "60", "61", "62", "63", "64", "65", "66", "67", "68", "69", "70", "71", "72", "73", "74", "75", "76", "77", "78", "79", "80", "81", "82", "83", "84", "85", "86", "87", "88", "89", "90", "91", "92", "93", "94", "95", "96", "97", "98", "99", "100", "101", "102", "103", "104" ] } ], "unrearranged_support": [], "rearranged_support": [], "paralogs": null, "curation": null, "curational_tags": null }, { "allele_description_id": "OGRDB:A01689", "allele_description_ref": "OGRDB:Mus musculus/NOD/ShiLtJ_IGK:IGKV-67MA.1", "maintainer": "William Lees", "acknowledgements": null, "lab_address": "Birkbeck College, University of London, Malet Street, London", "release_version": 1, "release_date": "03-May-2022", "release_description": "https://www.amazon.co.uk/Metre-Metal-Blocked-Unblocker-Cleaner/dp/B00UNGS08K/ref=sr_1_18?keywords=drain+unblocker&qid=1651577716&sprefix=drain%2Caps%2C68&sr=8-18", "label": "IGKV0-67MA*00", "sequence": "GATATTGTGCTAACTCAGTCTCCAGCCACCCTGTCTGTGACTCCAGGAGATAGCGTCAGTCTTTCCTGCAGGGCCAGCCAAAGTATTAGCAACAACCTACACTGGTATCAACAAAAATCACATGAGTCTCCAAGGCTTCTCATCAAGTATGCTTCCCAGTCCATCTCTGGGATCCCCTCCAAGTTCAGTGGCAGTGGATCAGGGACAGATTTCACTCTCAGTATCAACAGTGTGGAGACTGAAGATTTTGGAATGTATTTCTGTCAACAGAGTAACAGCTGGCCTCA", "coding_sequence": "GATATTGTGCTAACTCAGTCTCCAGCCACCCTGTCTGTGACTCCAGGAGATAGCGTCAGTCTTTCCTGCAGGGCCAGCCAAAGTATTAGCAACAACCTACACTGGTATCAACAAAAATCACATGAGTCTCCAAGGCTTCTCATCAAGTATGCTTCCCAGTCCATCTCTGGGATCCCCTCCAAGTTCAGTGGCAGTGGATCAGGGACAGATTTCACTCTCAGTATCAACAGTGTGGAGACTGAAGATTTTGGAATGTATTTCTGTCAACAGAGTAACAGCTGGCCTCA", "ext_3prime": null, "aliases": [ "Kos et al: IGKV5-43*01_S9511_NOD" ], "locus": "IGK", "chromosome": null, "sequence_type": "V", "functional": true, "inference_type": "Rearranged only", "species": { "id": "NCBITAXON:10090", "label": "Mus musculus" }, "species_subgroup": "NOD/ShiLtJ", "species_subgroup_type": "strain", "status": null, "gene_designation": null, "subgroup_designation": null, "allele_designation": null, "allele_similarity_cluster_designation": null, "allele_similarity_cluster_member_id": null, "gene_start": 1, "gene_end": 287, "utr_5_prime_start": null, "utr_5_prime_end": null, "leader_1_start": null, "leader_1_end": null, "leader_2_start": null, "leader_2_end": null, "v_rs_start": null, "v_rs_end": null, "v_gene_delineations": [ { "sequence_delineation_id": "1", "delineation_scheme": "IMGT", "unaligned_sequence": "GATATTGTGCTAACTCAGTCTCCAGCCACCCTGTCTGTGACTCCAGGAGATAGCGTCAGTCTTTCCTGCAGGGCCAGCCAAAGTATTAGCAACAACCTACACTGGTATCAACAAAAATCACATGAGTCTCCAAGGCTTCTCATCAAGTATGCTTCCCAGTCCATCTCTGGGATCCCCTCCAAGTTCAGTGGCAGTGGATCAGGGACAGATTTCACTCTCAGTATCAACAGTGTGGAGACTGAAGATTTTGGAATGTATTTCTGTCAACAGAGTAACAGCTGGCCTCA", "aligned_sequence": "GATATTGTGCTAACTCAGTCTCCAGCCACCCTGTCTGTGACTCCAGGAGATAGCGTCAGTCTTTCCTGCAGGGCCAGCCAAAGTATT..................AGCAACAACCTACACTGGTATCAACAAAAATCACATGAGTCTCCAAGGCTTCTCATCAAGTATGCT.....................TCCCAGTCCATCTCTGGGATCCCC...TCCAAGTTCAGTGGCAGTGGA......TCAGGGACAGATTTCACTCTCAGTATCAACAGTGTGGAGACTGAAGATTTTGGAATGTATTTCTGTCAACAGAGTAACAGCTGGCCTCA", "fwr1_start": 1, "fwr1_end": 78, "cdr1_start": 79, "cdr1_end": 96, "fwr2_start": 97, "fwr2_end": 147, "cdr2_start": 148, "cdr2_end": 156, "fwr3_start": 157, "fwr3_end": 264, "cdr3_start": 265, "alignment_labels": [ "1", "2", "3", "4", "5", "6", "7", "8", "9", "10", "11", "12", "13", "14", "15", "16", "17", "18", "19", "20", "21", "22", "23", "24", "25", "26", "27", "28", "29", "30", "31", "32", "33", "34", "35", "36", "37", "38", "39", "40", "41", "42", "43", "44", "45", "46", "47", "48", "49", "50", "51", "52", "53", "54", "55", "56", "57", "58", "59", "60", "61", "62", "63", "64", "65", "66", "67", "68", "69", "70", "71", "72", "73", "74", "75", "76", "77", "78", "79", "80", "81", "82", "83", "84", "85", "86", "87", "88", "89", "90", "91", "92", "93", "94", "95", "96", "97", "98", "99", "100", "101", "102", "103", "104" ] } ], "unrearranged_support": [], "rearranged_support": [], "paralogs": null, "curation": null, "curational_tags": null }, { "allele_description_id": "OGRDB:A01716", "allele_description_ref": "OGRDB:Mus musculus/NOD/ShiLtJ_IGK:IGKV-6E54.1", "maintainer": "William Lees", "acknowledgements": null, "lab_address": "Birkbeck College, University of London, Malet Street, London", "release_version": 1, "release_date": "03-May-2022", "release_description": "https://www.amazon.co.uk/Metre-Metal-Blocked-Unblocker-Cleaner/dp/B00UNGS08K/ref=sr_1_18?keywords=drain+unblocker&qid=1651577716&sprefix=drain%2Caps%2C68&sr=8-18", "label": "IGKV0-6E54*00", "sequence": "CAAATTGTTCTCACCCAGTCTCCAGCAATCATGTCTGCCTCTCCAGGGGAGAAGGTCACCATGACCTGCAGTGCCAGCTCAAGTGTAAGTTCCAGGTACTTGCACTGGTACCAGCAGAAGTCAGGAGCCTCCCCCAAACTCTGGATTTATGGCACATCCAACCTGGCTTCTGGAGTCCCTGCTCGCTTCAGTGGCAGTGGGTCTGGGACCTCTTACTCTCTCACAATCAGCAGCGTGGAGGCTGAAGATGCTGCCACTTATTACTGCCAGCAGTATCATAGTGACCCACTCA", "coding_sequence": "CAAATTGTTCTCACCCAGTCTCCAGCAATCATGTCTGCCTCTCCAGGGGAGAAGGTCACCATGACCTGCAGTGCCAGCTCAAGTGTAAGTTCCAGGTACTTGCACTGGTACCAGCAGAAGTCAGGAGCCTCCCCCAAACTCTGGATTTATGGCACATCCAACCTGGCTTCTGGAGTCCCTGCTCGCTTCAGTGGCAGTGGGTCTGGGACCTCTTACTCTCTCACAATCAGCAGCGTGGAGGCTGAAGATGCTGCCACTTATTACTGCCAGCAGTATCATAGTGACCCACTCA", "ext_3prime": null, "aliases": [ "Kos et al: IGKV4-57-1*01_S8603_NOD" ], "locus": "IGK", "chromosome": null, "sequence_type": "V", "functional": true, "inference_type": "Rearranged only", "species": { "id": "NCBITAXON:10090", "label": "Mus musculus" }, "species_subgroup": "NOD/ShiLtJ", "species_subgroup_type": "strain", "status": null, "gene_designation": null, "subgroup_designation": null, "allele_designation": null, "allele_similarity_cluster_designation": null, "allele_similarity_cluster_member_id": null, "gene_start": 1, "gene_end": 292, "utr_5_prime_start": null, "utr_5_prime_end": null, "leader_1_start": null, "leader_1_end": null, "leader_2_start": null, "leader_2_end": null, "v_rs_start": null, "v_rs_end": null, "v_gene_delineations": [ { "sequence_delineation_id": "1", "delineation_scheme": "IMGT", "unaligned_sequence": "CAAATTGTTCTCACCCAGTCTCCAGCAATCATGTCTGCCTCTCCAGGGGAGAAGGTCACCATGACCTGCAGTGCCAGCTCAAGTGTAAGTTCCAGGTACTTGCACTGGTACCAGCAGAAGTCAGGAGCCTCCCCCAAACTCTGGATTTATGGCACATCCAACCTGGCTTCTGGAGTCCCTGCTCGCTTCAGTGGCAGTGGGTCTGGGACCTCTTACTCTCTCACAATCAGCAGCGTGGAGGCTGAAGATGCTGCCACTTATTACTGCCAGCAGTATCATAGTGACCCACTCA", "aligned_sequence": "CAAATTGTTCTCACCCAGTCTCCAGCAATCATGTCTGCCTCTCCAGGGGAGAAGGTCACCATGACCTGCAGTGCCAGCTCAAGTGTAAGT...............TCCAGGTACTTGCACTGGTACCAGCAGAAGTCAGGAGCCTCCCCCAAACTCTGGATTTATGGCACA.....................TCCAACCTGGCTTCTGGAGTCCCT...GCTCGCTTCAGTGGCAGTGGG......TCTGGGACCTCTTACTCTCTCACAATCAGCAGCGTGGAGGCTGAAGATGCTGCCACTTATTACTGCCAGCAGTATCATAGTGACCCACTCA", "fwr1_start": 1, "fwr1_end": 78, "cdr1_start": 79, "cdr1_end": 99, "fwr2_start": 100, "fwr2_end": 150, "cdr2_start": 151, "cdr2_end": 159, "fwr3_start": 160, "fwr3_end": 267, "cdr3_start": 268, "alignment_labels": [ "1", "2", "3", "4", "5", "6", "7", "8", "9", "10", "11", "12", "13", "14", "15", "16", "17", "18", "19", "20", "21", "22", "23", "24", "25", "26", "27", "28", "29", "30", "31", "32", "33", "34", "35", "36", "37", "38", "39", "40", "41", "42", "43", "44", "45", "46", "47", "48", "49", "50", "51", "52", "53", "54", "55", "56", "57", "58", "59", "60", "61", "62", "63", "64", "65", "66", "67", "68", "69", "70", "71", "72", "73", "74", "75", "76", "77", "78", "79", "80", "81", "82", "83", "84", "85", "86", "87", "88", "89", "90", "91", "92", "93", "94", "95", "96", "97", "98", "99", "100", "101", "102", "103", "104" ] } ], "unrearranged_support": [], "rearranged_support": [], "paralogs": null, "curation": null, "curational_tags": null }, { "allele_description_id": "OGRDB:A01725", "allele_description_ref": "OGRDB:Mus musculus/NOD/ShiLtJ_IGK:IGKV-6ND3.1", "maintainer": "William Lees", "acknowledgements": null, "lab_address": "Birkbeck College, University of London, Malet Street, London", "release_version": 1, "release_date": "03-May-2022", "release_description": "https://www.amazon.co.uk/Metre-Metal-Blocked-Unblocker-Cleaner/dp/B00UNGS08K/ref=sr_1_18?keywords=drain+unblocker&qid=1651577716&sprefix=drain%2Caps%2C68&sr=8-18", "label": "IGKV0-6ND3*00", "sequence": "CAAATTGTTCTCACCCAGTCTCCAGCAATCATGTCTGCATCTCCTGGGGAACGGGTCACCATGACCTGCAGTGCCAGCTCAAGTGTAAGTTCCAGCTACTTGTACTGGTACCAGCAGAAGCCAGGATCCTCCCCCAAACTATGGATTTATAGCACATCCAACCTGGCTTCTGGAGTCCCTGCTCGCTTCAGTGGCAGTGGGTCTGGGACCTCTTATTCTCTCACAATCAGCAGCATGGAGGCTGAAGATGCTGCCACTTATTACTGCCAGCAGTACAATGGTTACCCATCCA", "coding_sequence": "CAAATTGTTCTCACCCAGTCTCCAGCAATCATGTCTGCATCTCCTGGGGAACGGGTCACCATGACCTGCAGTGCCAGCTCAAGTGTAAGTTCCAGCTACTTGTACTGGTACCAGCAGAAGCCAGGATCCTCCCCCAAACTATGGATTTATAGCACATCCAACCTGGCTTCTGGAGTCCCTGCTCGCTTCAGTGGCAGTGGGTCTGGGACCTCTTATTCTCTCACAATCAGCAGCATGGAGGCTGAAGATGCTGCCACTTATTACTGCCAGCAGTACAATGGTTACCCATCCA", "ext_3prime": null, "aliases": [ "Kos et al: IGKV4-78*01_S4828_NOD" ], "locus": "IGK", "chromosome": null, "sequence_type": "V", "functional": true, "inference_type": "Rearranged only", "species": { "id": "NCBITAXON:10090", "label": "Mus musculus" }, "species_subgroup": "NOD/ShiLtJ", "species_subgroup_type": "strain", "status": null, "gene_designation": null, "subgroup_designation": null, "allele_designation": null, "allele_similarity_cluster_designation": null, "allele_similarity_cluster_member_id": null, "gene_start": 1, "gene_end": 292, "utr_5_prime_start": null, "utr_5_prime_end": null, "leader_1_start": null, "leader_1_end": null, "leader_2_start": null, "leader_2_end": null, "v_rs_start": null, "v_rs_end": null, "v_gene_delineations": [ { "sequence_delineation_id": "1", "delineation_scheme": "IMGT", "unaligned_sequence": "CAAATTGTTCTCACCCAGTCTCCAGCAATCATGTCTGCATCTCCTGGGGAACGGGTCACCATGACCTGCAGTGCCAGCTCAAGTGTAAGTTCCAGCTACTTGTACTGGTACCAGCAGAAGCCAGGATCCTCCCCCAAACTATGGATTTATAGCACATCCAACCTGGCTTCTGGAGTCCCTGCTCGCTTCAGTGGCAGTGGGTCTGGGACCTCTTATTCTCTCACAATCAGCAGCATGGAGGCTGAAGATGCTGCCACTTATTACTGCCAGCAGTACAATGGTTACCCATCCA", "aligned_sequence": "CAAATTGTTCTCACCCAGTCTCCAGCAATCATGTCTGCATCTCCTGGGGAACGGGTCACCATGACCTGCAGTGCCAGCTCAAGTGTAAGT...............TCCAGCTACTTGTACTGGTACCAGCAGAAGCCAGGATCCTCCCCCAAACTATGGATTTATAGCACA.....................TCCAACCTGGCTTCTGGAGTCCCT...GCTCGCTTCAGTGGCAGTGGG......TCTGGGACCTCTTATTCTCTCACAATCAGCAGCATGGAGGCTGAAGATGCTGCCACTTATTACTGCCAGCAGTACAATGGTTACCCATCCA", "fwr1_start": 1, "fwr1_end": 78, "cdr1_start": 79, "cdr1_end": 99, "fwr2_start": 100, "fwr2_end": 150, "cdr2_start": 151, "cdr2_end": 159, "fwr3_start": 160, "fwr3_end": 267, "cdr3_start": 268, "alignment_labels": [ "1", "2", "3", "4", "5", "6", "7", "8", "9", "10", "11", "12", "13", "14", "15", "16", "17", "18", "19", "20", "21", "22", "23", "24", "25", "26", "27", "28", "29", "30", "31", "32", "33", "34", "35", "36", "37", "38", "39", "40", "41", "42", "43", "44", "45", "46", "47", "48", "49", "50", "51", "52", "53", "54", "55", "56", "57", "58", "59", "60", "61", "62", "63", "64", "65", "66", "67", "68", "69", "70", "71", "72", "73", "74", "75", "76", "77", "78", "79", "80", "81", "82", "83", "84", "85", "86", "87", "88", "89", "90", "91", "92", "93", "94", "95", "96", "97", "98", "99", "100", "101", "102", "103", "104" ] } ], "unrearranged_support": [], "rearranged_support": [], "paralogs": null, "curation": null, "curational_tags": null }, { "allele_description_id": "OGRDB:A01691", "allele_description_ref": "OGRDB:Mus musculus/NOD/ShiLtJ_IGK:IGKV-7NXP.1", "maintainer": "William Lees", "acknowledgements": null, "lab_address": "Birkbeck College, University of London, Malet Street, London", "release_version": 1, "release_date": "03-May-2022", "release_description": "https://www.amazon.co.uk/Metre-Metal-Blocked-Unblocker-Cleaner/dp/B00UNGS08K/ref=sr_1_18?keywords=drain+unblocker&qid=1651577716&sprefix=drain%2Caps%2C68&sr=8-18", "label": "IGKV0-7NXP*00", "sequence": "CAGATTGTTCTCACCCAGTCTCCAGCAATCATGTCTGCATCTCCAGGGGAGAAGGTCACCATGACCTGCAGGGCCAGCTCAAGTGTAAGTTCCAGTTACTTGCACTGGTACCAGCAGAAGCCAGGATCTTCCCCCAAACTCTGGATTTATAGCACATCCAACCTGGCTTCAGGAGTCCCAGCTCGCTTCAGTGGCAGTGGGTCTGGGACCTCTTACTCTCTCACAATCAGCAGTGTGGAGGCTGAGGATGCTGCCACTTATTACTGCCAGCAGTATGATAGTTCCCCACTCA", "coding_sequence": "CAGATTGTTCTCACCCAGTCTCCAGCAATCATGTCTGCATCTCCAGGGGAGAAGGTCACCATGACCTGCAGGGCCAGCTCAAGTGTAAGTTCCAGTTACTTGCACTGGTACCAGCAGAAGCCAGGATCTTCCCCCAAACTCTGGATTTATAGCACATCCAACCTGGCTTCAGGAGTCCCAGCTCGCTTCAGTGGCAGTGGGTCTGGGACCTCTTACTCTCTCACAATCAGCAGTGTGGAGGCTGAGGATGCTGCCACTTATTACTGCCAGCAGTATGATAGTTCCCCACTCA", "ext_3prime": null, "aliases": [ "Kos et al: IGKV4-74*01_S0897_NOD" ], "locus": "IGK", "chromosome": null, "sequence_type": "V", "functional": true, "inference_type": "Rearranged only", "species": { "id": "NCBITAXON:10090", "label": "Mus musculus" }, "species_subgroup": "NOD/ShiLtJ", "species_subgroup_type": "strain", "status": null, "gene_designation": null, "subgroup_designation": null, "allele_designation": null, "allele_similarity_cluster_designation": null, "allele_similarity_cluster_member_id": null, "gene_start": 1, "gene_end": 292, "utr_5_prime_start": null, "utr_5_prime_end": null, "leader_1_start": null, "leader_1_end": null, "leader_2_start": null, "leader_2_end": null, "v_rs_start": null, "v_rs_end": null, "v_gene_delineations": [ { "sequence_delineation_id": "1", "delineation_scheme": "IMGT", "unaligned_sequence": "CAGATTGTTCTCACCCAGTCTCCAGCAATCATGTCTGCATCTCCAGGGGAGAAGGTCACCATGACCTGCAGGGCCAGCTCAAGTGTAAGTTCCAGTTACTTGCACTGGTACCAGCAGAAGCCAGGATCTTCCCCCAAACTCTGGATTTATAGCACATCCAACCTGGCTTCAGGAGTCCCAGCTCGCTTCAGTGGCAGTGGGTCTGGGACCTCTTACTCTCTCACAATCAGCAGTGTGGAGGCTGAGGATGCTGCCACTTATTACTGCCAGCAGTATGATAGTTCCCCACTCA", "aligned_sequence": "CAGATTGTTCTCACCCAGTCTCCAGCAATCATGTCTGCATCTCCAGGGGAGAAGGTCACCATGACCTGCAGGGCCAGCTCAAGTGTAAGT...............TCCAGTTACTTGCACTGGTACCAGCAGAAGCCAGGATCTTCCCCCAAACTCTGGATTTATAGCACA.....................TCCAACCTGGCTTCAGGAGTCCCA...GCTCGCTTCAGTGGCAGTGGG......TCTGGGACCTCTTACTCTCTCACAATCAGCAGTGTGGAGGCTGAGGATGCTGCCACTTATTACTGCCAGCAGTATGATAGTTCCCCACTCA", "fwr1_start": 1, "fwr1_end": 78, "cdr1_start": 79, "cdr1_end": 99, "fwr2_start": 100, "fwr2_end": 150, "cdr2_start": 151, "cdr2_end": 159, "fwr3_start": 160, "fwr3_end": 267, "cdr3_start": 268, "alignment_labels": [ "1", "2", "3", "4", "5", "6", "7", "8", "9", "10", "11", "12", "13", "14", "15", "16", "17", "18", "19", "20", "21", "22", "23", "24", "25", "26", "27", "28", "29", "30", "31", "32", "33", "34", "35", "36", "37", "38", "39", "40", "41", "42", "43", "44", "45", "46", "47", "48", "49", "50", "51", "52", "53", "54", "55", "56", "57", "58", "59", "60", "61", "62", "63", "64", "65", "66", "67", "68", "69", "70", "71", "72", "73", "74", "75", "76", "77", "78", "79", "80", "81", "82", "83", "84", "85", "86", "87", "88", "89", "90", "91", "92", "93", "94", "95", "96", "97", "98", "99", "100", "101", "102", "103", "104" ] } ], "unrearranged_support": [], "rearranged_support": [], "paralogs": null, "curation": null, "curational_tags": null }, { "allele_description_id": "OGRDB:A01703", "allele_description_ref": "OGRDB:Mus musculus/NOD/ShiLtJ_IGK:IGKV-7WFL.1", "maintainer": "William Lees", "acknowledgements": null, "lab_address": "Birkbeck College, University of London, Malet Street, London", "release_version": 1, "release_date": "03-May-2022", "release_description": "https://www.amazon.co.uk/Metre-Metal-Blocked-Unblocker-Cleaner/dp/B00UNGS08K/ref=sr_1_18?keywords=drain+unblocker&qid=1651577716&sprefix=drain%2Caps%2C68&sr=8-18", "label": "IGKV0-7WFL*00", "sequence": "GATATTGTGATGACGCAGGCTGCATTCTCCAATCCAGTCACTCTTGGAACGTCAGCTTCCATCTCCTGCAGGTCTAGTAAGAGTCTCCTACATAGTGATGGCATCACTTATTTGTATTGGTATCTGCAGAGGCCAGGCCAGTCTCCTCAGCTCCTGATATATCGGATGTCCAACCTTGCCTCAGGAGTCCCAGACAGGTTCAGTGGCAGTGGGTCAGGAACTGATTTCACACTGAGAATCAGCAGAGTGGAGGCTGAGGATGTGGGTGTTTATTACTGTGCTCAAATGCTAGAATTCCCTCC", "coding_sequence": "GATATTGTGATGACGCAGGCTGCATTCTCCAATCCAGTCACTCTTGGAACGTCAGCTTCCATCTCCTGCAGGTCTAGTAAGAGTCTCCTACATAGTGATGGCATCACTTATTTGTATTGGTATCTGCAGAGGCCAGGCCAGTCTCCTCAGCTCCTGATATATCGGATGTCCAACCTTGCCTCAGGAGTCCCAGACAGGTTCAGTGGCAGTGGGTCAGGAACTGATTTCACACTGAGAATCAGCAGAGTGGAGGCTGAGGATGTGGGTGTTTATTACTGTGCTCAAATGCTAGAATTCCCTCC", "ext_3prime": null, "aliases": [ "Kos et al: IGKV2-109*04_NOD" ], "locus": "IGK", "chromosome": null, "sequence_type": "V", "functional": true, "inference_type": "Rearranged only", "species": { "id": "NCBITAXON:10090", "label": "Mus musculus" }, "species_subgroup": "NOD/ShiLtJ", "species_subgroup_type": "strain", "status": null, "gene_designation": null, "subgroup_designation": null, "allele_designation": null, "allele_similarity_cluster_designation": null, "allele_similarity_cluster_member_id": null, "gene_start": 1, "gene_end": 302, "utr_5_prime_start": null, "utr_5_prime_end": null, "leader_1_start": null, "leader_1_end": null, "leader_2_start": null, "leader_2_end": null, "v_rs_start": null, "v_rs_end": null, "v_gene_delineations": [ { "sequence_delineation_id": "1", "delineation_scheme": "IMGT", "unaligned_sequence": "GATATTGTGATGACGCAGGCTGCATTCTCCAATCCAGTCACTCTTGGAACGTCAGCTTCCATCTCCTGCAGGTCTAGTAAGAGTCTCCTACATAGTGATGGCATCACTTATTTGTATTGGTATCTGCAGAGGCCAGGCCAGTCTCCTCAGCTCCTGATATATCGGATGTCCAACCTTGCCTCAGGAGTCCCAGACAGGTTCAGTGGCAGTGGGTCAGGAACTGATTTCACACTGAGAATCAGCAGAGTGGAGGCTGAGGATGTGGGTGTTTATTACTGTGCTCAAATGCTAGAATTCCCTCC", "aligned_sequence": "GATATTGTGATGACGCAGGCTGCATTCTCCAATCCAGTCACTCTTGGAACGTCAGCTTCCATCTCCTGCAGGTCTAGTAAGAGTCTCCTACATAGT...GATGGCATCACTTATTTGTATTGGTATCTGCAGAGGCCAGGCCAGTCTCCTCAGCTCCTGATATATCGGATG.....................TCCAACCTTGCCTCAGGAGTCCCA...GACAGGTTCAGTGGCAGTGGG......TCAGGAACTGATTTCACACTGAGAATCAGCAGAGTGGAGGCTGAGGATGTGGGTGTTTATTACTGTGCTCAAATGCTAGAATTCCCTCC", "fwr1_start": 1, "fwr1_end": 78, "cdr1_start": 79, "cdr1_end": 111, "fwr2_start": 112, "fwr2_end": 162, "cdr2_start": 163, "cdr2_end": 171, "fwr3_start": 172, "fwr3_end": 279, "cdr3_start": 280, "alignment_labels": [ "1", "2", "3", "4", "5", "6", "7", "8", "9", "10", "11", "12", "13", "14", "15", "16", "17", "18", "19", "20", "21", "22", "23", "24", "25", "26", "27", "28", "29", "30", "31", "32", "33", "34", "35", "36", "37", "38", "39", "40", "41", "42", "43", "44", "45", "46", "47", "48", "49", "50", "51", "52", "53", "54", "55", "56", "57", "58", "59", "60", "61", "62", "63", "64", "65", "66", "67", "68", "69", "70", "71", "72", "73", "74", "75", "76", "77", "78", "79", "80", "81", "82", "83", "84", "85", "86", "87", "88", "89", "90", "91", "92", "93", "94", "95", "96", "97", "98", "99", "100", "101", "102", "103", "104" ] } ], "unrearranged_support": [], "rearranged_support": [], "paralogs": null, "curation": null, "curational_tags": null }, { "allele_description_id": "OGRDB:A01706", "allele_description_ref": "OGRDB:Mus musculus/NOD/ShiLtJ_IGK:IGKV-7XYM.1", "maintainer": "William Lees", "acknowledgements": null, "lab_address": "Birkbeck College, University of London, Malet Street, London", "release_version": 1, "release_date": "03-May-2022", "release_description": "https://www.amazon.co.uk/Metre-Metal-Blocked-Unblocker-Cleaner/dp/B00UNGS08K/ref=sr_1_18?keywords=drain+unblocker&qid=1651577716&sprefix=drain%2Caps%2C68&sr=8-18", "label": "IGKV0-7XYM*00", "sequence": "GACATTGTGATGACCCAGTCTCAAAAATTCATGTCCACATCAGTAGGAGAGAGGGTCAGCATCACCTGCAAGGCCAGTCAGAATGTAGGTACTAATGTAGCCTGGTATCAGCAGAAAGCAGGGCAGTCTCTTGAACTGCTGATCTATGGGGCATCCAACCGGCACACTGGAGTCCCTGATCGCTTCACAGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCACCAATGTGCAGTCTGAAGACATGACAAATTATTTCTGTGAGCAATATAGCAGCTATCCTCT", "coding_sequence": "GACATTGTGATGACCCAGTCTCAAAAATTCATGTCCACATCAGTAGGAGAGAGGGTCAGCATCACCTGCAAGGCCAGTCAGAATGTAGGTACTAATGTAGCCTGGTATCAGCAGAAAGCAGGGCAGTCTCTTGAACTGCTGATCTATGGGGCATCCAACCGGCACACTGGAGTCCCTGATCGCTTCACAGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCACCAATGTGCAGTCTGAAGACATGACAAATTATTTCTGTGAGCAATATAGCAGCTATCCTCT", "ext_3prime": null, "aliases": [ "Kos et al: IGKV6-23*01_S4960_NOD" ], "locus": "IGK", "chromosome": null, "sequence_type": "V", "functional": true, "inference_type": "Rearranged only", "species": { "id": "NCBITAXON:10090", "label": "Mus musculus" }, "species_subgroup": "NOD/ShiLtJ", "species_subgroup_type": "strain", "status": null, "gene_designation": null, "subgroup_designation": null, "allele_designation": null, "allele_similarity_cluster_designation": null, "allele_similarity_cluster_member_id": null, "gene_start": 1, "gene_end": 287, "utr_5_prime_start": null, "utr_5_prime_end": null, "leader_1_start": null, "leader_1_end": null, "leader_2_start": null, "leader_2_end": null, "v_rs_start": null, "v_rs_end": null, "v_gene_delineations": [ { "sequence_delineation_id": "1", "delineation_scheme": "IMGT", "unaligned_sequence": "GACATTGTGATGACCCAGTCTCAAAAATTCATGTCCACATCAGTAGGAGAGAGGGTCAGCATCACCTGCAAGGCCAGTCAGAATGTAGGTACTAATGTAGCCTGGTATCAGCAGAAAGCAGGGCAGTCTCTTGAACTGCTGATCTATGGGGCATCCAACCGGCACACTGGAGTCCCTGATCGCTTCACAGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCACCAATGTGCAGTCTGAAGACATGACAAATTATTTCTGTGAGCAATATAGCAGCTATCCTCT", "aligned_sequence": "GACATTGTGATGACCCAGTCTCAAAAATTCATGTCCACATCAGTAGGAGAGAGGGTCAGCATCACCTGCAAGGCCAGTCAGAATGTA..................GGTACTAATGTAGCCTGGTATCAGCAGAAAGCAGGGCAGTCTCTTGAACTGCTGATCTATGGGGCA.....................TCCAACCGGCACACTGGAGTCCCT...GATCGCTTCACAGGCAGTGGA......TCTGGGACAGATTTCACTCTCACCATCACCAATGTGCAGTCTGAAGACATGACAAATTATTTCTGTGAGCAATATAGCAGCTATCCTCT", "fwr1_start": 1, "fwr1_end": 78, "cdr1_start": 79, "cdr1_end": 96, "fwr2_start": 97, "fwr2_end": 147, "cdr2_start": 148, "cdr2_end": 156, "fwr3_start": 157, "fwr3_end": 264, "cdr3_start": 265, "alignment_labels": [ "1", "2", "3", "4", "5", "6", "7", "8", "9", "10", "11", "12", "13", "14", "15", "16", "17", "18", "19", "20", "21", "22", "23", "24", "25", "26", "27", "28", "29", "30", "31", "32", "33", "34", "35", "36", "37", "38", "39", "40", "41", "42", "43", "44", "45", "46", "47", "48", "49", "50", "51", "52", "53", "54", "55", "56", "57", "58", "59", "60", "61", "62", "63", "64", "65", "66", "67", "68", "69", "70", "71", "72", "73", "74", "75", "76", "77", "78", "79", "80", "81", "82", "83", "84", "85", "86", "87", "88", "89", "90", "91", "92", "93", "94", "95", "96", "97", "98", "99", "100", "101", "102", "103", "104" ] } ], "unrearranged_support": [], "rearranged_support": [], "paralogs": null, "curation": null, "curational_tags": null }, { "allele_description_id": "OGRDB:A01675", "allele_description_ref": "OGRDB:Mus musculus/NOD/ShiLtJ_IGK:IGKV-BF4V.1", "maintainer": "William Lees", "acknowledgements": null, "lab_address": "Birkbeck College, University of London, Malet Street, London", "release_version": 1, "release_date": "03-May-2022", "release_description": "https://www.amazon.co.uk/Metre-Metal-Blocked-Unblocker-Cleaner/dp/B00UNGS08K/ref=sr_1_18?keywords=drain+unblocker&qid=1651577716&sprefix=drain%2Caps%2C68&sr=8-18", "label": "IGKV0-BF4V*00", "sequence": "GATATCCAGATGACACAGACTACATCCTCCCTGTCTGCCTCTCTGGGAGACAGAGTCACCATCAGTTGCAGGGCAAGTCAGGATATTAGCAATTATTTAAACTGGTATCAGCAGAAACCAGATGGAACTGTTAAACTCCTGATCTACTACACATCAAGATTACACTCAGGAGTCCCATCAAGGTTCAGTGGCAGTGGGTCTGGGACAGATTATTCTCTCACCATCAGCAACCTGGAACCTGAAGATATTGCCACTTACTATTGTCAGCAGTATAGTAAGCTTCCTCC", "coding_sequence": "GATATCCAGATGACACAGACTACATCCTCCCTGTCTGCCTCTCTGGGAGACAGAGTCACCATCAGTTGCAGGGCAAGTCAGGATATTAGCAATTATTTAAACTGGTATCAGCAGAAACCAGATGGAACTGTTAAACTCCTGATCTACTACACATCAAGATTACACTCAGGAGTCCCATCAAGGTTCAGTGGCAGTGGGTCTGGGACAGATTATTCTCTCACCATCAGCAACCTGGAACCTGAAGATATTGCCACTTACTATTGTCAGCAGTATAGTAAGCTTCCTCC", "ext_3prime": null, "aliases": [ "Kos et al: IGKV10-94*03_NOD" ], "locus": "IGK", "chromosome": null, "sequence_type": "V", "functional": true, "inference_type": "Rearranged only", "species": { "id": "NCBITAXON:10090", "label": "Mus musculus" }, "species_subgroup": "NOD/ShiLtJ", "species_subgroup_type": "strain", "status": null, "gene_designation": null, "subgroup_designation": null, "allele_designation": null, "allele_similarity_cluster_designation": null, "allele_similarity_cluster_member_id": null, "gene_start": 1, "gene_end": 287, "utr_5_prime_start": null, "utr_5_prime_end": null, "leader_1_start": null, "leader_1_end": null, "leader_2_start": null, "leader_2_end": null, "v_rs_start": null, "v_rs_end": null, "v_gene_delineations": [ { "sequence_delineation_id": "1", "delineation_scheme": "IMGT", "unaligned_sequence": "GATATCCAGATGACACAGACTACATCCTCCCTGTCTGCCTCTCTGGGAGACAGAGTCACCATCAGTTGCAGGGCAAGTCAGGATATTAGCAATTATTTAAACTGGTATCAGCAGAAACCAGATGGAACTGTTAAACTCCTGATCTACTACACATCAAGATTACACTCAGGAGTCCCATCAAGGTTCAGTGGCAGTGGGTCTGGGACAGATTATTCTCTCACCATCAGCAACCTGGAACCTGAAGATATTGCCACTTACTATTGTCAGCAGTATAGTAAGCTTCCTCC", "aligned_sequence": "GATATCCAGATGACACAGACTACATCCTCCCTGTCTGCCTCTCTGGGAGACAGAGTCACCATCAGTTGCAGGGCAAGTCAGGATATT..................AGCAATTATTTAAACTGGTATCAGCAGAAACCAGATGGAACTGTTAAACTCCTGATCTACTACACA.....................TCAAGATTACACTCAGGAGTCCCA...TCAAGGTTCAGTGGCAGTGGG......TCTGGGACAGATTATTCTCTCACCATCAGCAACCTGGAACCTGAAGATATTGCCACTTACTATTGTCAGCAGTATAGTAAGCTTCCTCC", "fwr1_start": 1, "fwr1_end": 78, "cdr1_start": 79, "cdr1_end": 96, "fwr2_start": 97, "fwr2_end": 147, "cdr2_start": 148, "cdr2_end": 156, "fwr3_start": 157, "fwr3_end": 264, "cdr3_start": 265, "alignment_labels": [ "1", "2", "3", "4", "5", "6", "7", "8", "9", "10", "11", "12", "13", "14", "15", "16", "17", "18", "19", "20", "21", "22", "23", "24", "25", "26", "27", "28", "29", "30", "31", "32", "33", "34", "35", "36", "37", "38", "39", "40", "41", "42", "43", "44", "45", "46", "47", "48", "49", "50", "51", "52", "53", "54", "55", "56", "57", "58", "59", "60", "61", "62", "63", "64", "65", "66", "67", "68", "69", "70", "71", "72", "73", "74", "75", "76", "77", "78", "79", "80", "81", "82", "83", "84", "85", "86", "87", "88", "89", "90", "91", "92", "93", "94", "95", "96", "97", "98", "99", "100", "101", "102", "103", "104" ] } ], "unrearranged_support": [], "rearranged_support": [], "paralogs": null, "curation": null, "curational_tags": null }, { "allele_description_id": "OGRDB:A01719", "allele_description_ref": "OGRDB:Mus musculus/NOD/ShiLtJ_IGK:IGKV-CUC3.1", "maintainer": "William Lees", "acknowledgements": null, "lab_address": "Birkbeck College, University of London, Malet Street, London", "release_version": 1, "release_date": "03-May-2022", "release_description": "https://www.amazon.co.uk/Metre-Metal-Blocked-Unblocker-Cleaner/dp/B00UNGS08K/ref=sr_1_18?keywords=drain+unblocker&qid=1651577716&sprefix=drain%2Caps%2C68&sr=8-18", "label": "IGKV0-CUC3*00", "sequence": "GATGCTGTGATGACCCAAACTCCACTCTCCCTGCCTGTCAGTCTTGGAGATCAAGCCTCCATCTCTTGCAGGTCTAGTCAGAGCCTTGAAAACAGTAATGGAAACACCTATTTGAACTGGTACCTCCAGAAACCAGGCCAGTCTCCACAGCTCCTGATCTACAGGGTTTCCAACCGATTTTCTGGGGTCCTAGACAGGTTCAGTGGCAGTGGTTCAGGGACAGATTTCACACTCAAGATCAGCAGAGTGGAGGCTGAGGATTTGGGAGTTTATTTCTGCCTCCAAGTTACACATGTCCC", "coding_sequence": "GATGCTGTGATGACCCAAACTCCACTCTCCCTGCCTGTCAGTCTTGGAGATCAAGCCTCCATCTCTTGCAGGTCTAGTCAGAGCCTTGAAAACAGTAATGGAAACACCTATTTGAACTGGTACCTCCAGAAACCAGGCCAGTCTCCACAGCTCCTGATCTACAGGGTTTCCAACCGATTTTCTGGGGTCCTAGACAGGTTCAGTGGCAGTGGTTCAGGGACAGATTTCACACTCAAGATCAGCAGAGTGGAGGCTGAGGATTTGGGAGTTTATTTCTGCCTCCAAGTTACACATGTCCC", "ext_3prime": null, "aliases": [ "Kos et al: IGKV1-122*01_S2138_NOD" ], "locus": "IGK", "chromosome": null, "sequence_type": "V", "functional": true, "inference_type": "Rearranged only", "species": { "id": "NCBITAXON:10090", "label": "Mus musculus" }, "species_subgroup": "NOD/ShiLtJ", "species_subgroup_type": "strain", "status": null, "gene_designation": null, "subgroup_designation": null, "allele_designation": null, "allele_similarity_cluster_designation": null, "allele_similarity_cluster_member_id": null, "gene_start": 1, "gene_end": 299, "utr_5_prime_start": null, "utr_5_prime_end": null, "leader_1_start": null, "leader_1_end": null, "leader_2_start": null, "leader_2_end": null, "v_rs_start": null, "v_rs_end": null, "v_gene_delineations": [ { "sequence_delineation_id": "1", "delineation_scheme": "IMGT", "unaligned_sequence": "GATGCTGTGATGACCCAAACTCCACTCTCCCTGCCTGTCAGTCTTGGAGATCAAGCCTCCATCTCTTGCAGGTCTAGTCAGAGCCTTGAAAACAGTAATGGAAACACCTATTTGAACTGGTACCTCCAGAAACCAGGCCAGTCTCCACAGCTCCTGATCTACAGGGTTTCCAACCGATTTTCTGGGGTCCTAGACAGGTTCAGTGGCAGTGGTTCAGGGACAGATTTCACACTCAAGATCAGCAGAGTGGAGGCTGAGGATTTGGGAGTTTATTTCTGCCTCCAAGTTACACATGTCCC", "aligned_sequence": "GATGCTGTGATGACCCAAACTCCACTCTCCCTGCCTGTCAGTCTTGGAGATCAAGCCTCCATCTCTTGCAGGTCTAGTCAGAGCCTTGAAAACAGT...AATGGAAACACCTATTTGAACTGGTACCTCCAGAAACCAGGCCAGTCTCCACAGCTCCTGATCTACAGGGTT.....................TCCAACCGATTTTCTGGGGTCCTA...GACAGGTTCAGTGGCAGTGGT......TCAGGGACAGATTTCACACTCAAGATCAGCAGAGTGGAGGCTGAGGATTTGGGAGTTTATTTCTGCCTCCAAGTTACACATGTCCC", "fwr1_start": 1, "fwr1_end": 78, "cdr1_start": 79, "cdr1_end": 111, "fwr2_start": 112, "fwr2_end": 162, "cdr2_start": 163, "cdr2_end": 171, "fwr3_start": 172, "fwr3_end": 279, "cdr3_start": 280, "alignment_labels": [ "1", "2", "3", "4", "5", "6", "7", "8", "9", "10", "11", "12", "13", "14", "15", "16", "17", "18", "19", "20", "21", "22", "23", "24", "25", "26", "27", "28", "29", "30", "31", "32", "33", "34", "35", "36", "37", "38", "39", "40", "41", "42", "43", "44", "45", "46", "47", "48", "49", "50", "51", "52", "53", "54", "55", "56", "57", "58", "59", "60", "61", "62", "63", "64", "65", "66", "67", "68", "69", "70", "71", "72", "73", "74", "75", "76", "77", "78", "79", "80", "81", "82", "83", "84", "85", "86", "87", "88", "89", "90", "91", "92", "93", "94", "95", "96", "97", "98", "99", "100", "101", "102", "103", "104" ] } ], "unrearranged_support": [], "rearranged_support": [], "paralogs": null, "curation": null, "curational_tags": null }, { "allele_description_id": "OGRDB:A01723", "allele_description_ref": "OGRDB:Mus musculus/NOD/ShiLtJ_IGK:IGKV-CYCX.1", "maintainer": "William Lees", "acknowledgements": null, "lab_address": "Birkbeck College, University of London, Malet Street, London", "release_version": 1, "release_date": "03-May-2022", "release_description": "https://www.amazon.co.uk/Metre-Metal-Blocked-Unblocker-Cleaner/dp/B00UNGS08K/ref=sr_1_18?keywords=drain+unblocker&qid=1651577716&sprefix=drain%2Caps%2C68&sr=8-18", "label": "IGKV0-CYCX*00", "sequence": "GATGTCCAGATAACCCAGTCTCCATCTTATCTTGCTGCATCTCCTGGAGAAACCATTACTATTAATTGCAGGGCAAGTAAGAGCATTAGCAAATATTTAGCCTGGTATCAAGAGAAACCTGGGAAAACTAATAAGCTTCTTATCTACTCTGGATCCACTTTGCAATCTGGAATTCCATCAAGGTTCAGTGGCAGTGGATCTGGTACAGATTTCACTCTCACCATCAGTAGCCTGGAGCCTGAAGATTTTGCAATGTATTACTGTCAACAGCATAATGAATCCCCGTAC", "coding_sequence": "GATGTCCAGATAACCCAGTCTCCATCTTATCTTGCTGCATCTCCTGGAGAAACCATTACTATTAATTGCAGGGCAAGTAAGAGCATTAGCAAATATTTAGCCTGGTATCAAGAGAAACCTGGGAAAACTAATAAGCTTCTTATCTACTCTGGATCCACTTTGCAATCTGGAATTCCATCAAGGTTCAGTGGCAGTGGATCTGGTACAGATTTCACTCTCACCATCAGTAGCCTGGAGCCTGAAGATTTTGCAATGTATTACTGTCAACAGCATAATGAATCCCCGTAC", "ext_3prime": null, "aliases": [ "Kos et al: IGKV16-104*01_S6011_NOD" ], "locus": "IGK", "chromosome": null, "sequence_type": "V", "functional": true, "inference_type": "Rearranged only", "species": { "id": "NCBITAXON:10090", "label": "Mus musculus" }, "species_subgroup": "NOD/ShiLtJ", "species_subgroup_type": "strain", "status": null, "gene_designation": null, "subgroup_designation": null, "allele_designation": null, "allele_similarity_cluster_designation": null, "allele_similarity_cluster_member_id": null, "gene_start": 1, "gene_end": 288, "utr_5_prime_start": null, "utr_5_prime_end": null, "leader_1_start": null, "leader_1_end": null, "leader_2_start": null, "leader_2_end": null, "v_rs_start": null, "v_rs_end": null, "v_gene_delineations": [ { "sequence_delineation_id": "1", "delineation_scheme": "IMGT", "unaligned_sequence": "GATGTCCAGATAACCCAGTCTCCATCTTATCTTGCTGCATCTCCTGGAGAAACCATTACTATTAATTGCAGGGCAAGTAAGAGCATTAGCAAATATTTAGCCTGGTATCAAGAGAAACCTGGGAAAACTAATAAGCTTCTTATCTACTCTGGATCCACTTTGCAATCTGGAATTCCATCAAGGTTCAGTGGCAGTGGATCTGGTACAGATTTCACTCTCACCATCAGTAGCCTGGAGCCTGAAGATTTTGCAATGTATTACTGTCAACAGCATAATGAATCCCCGTAC", "aligned_sequence": "GATGTCCAGATAACCCAGTCTCCATCTTATCTTGCTGCATCTCCTGGAGAAACCATTACTATTAATTGCAGGGCAAGTAAGAGCATT..................AGCAAATATTTAGCCTGGTATCAAGAGAAACCTGGGAAAACTAATAAGCTTCTTATCTACTCTGGA.....................TCCACTTTGCAATCTGGAATTCCA...TCAAGGTTCAGTGGCAGTGGA......TCTGGTACAGATTTCACTCTCACCATCAGTAGCCTGGAGCCTGAAGATTTTGCAATGTATTACTGTCAACAGCATAATGAATCCCCGTAC", "fwr1_start": 1, "fwr1_end": 78, "cdr1_start": 79, "cdr1_end": 96, "fwr2_start": 97, "fwr2_end": 147, "cdr2_start": 148, "cdr2_end": 156, "fwr3_start": 157, "fwr3_end": 264, "cdr3_start": 265, "alignment_labels": [ "1", "2", "3", "4", "5", "6", "7", "8", "9", "10", "11", "12", "13", "14", "15", "16", "17", "18", "19", "20", "21", "22", "23", "24", "25", "26", "27", "28", "29", "30", "31", "32", "33", "34", "35", "36", "37", "38", "39", "40", "41", "42", "43", "44", "45", "46", "47", "48", "49", "50", "51", "52", "53", "54", "55", "56", "57", "58", "59", "60", "61", "62", "63", "64", "65", "66", "67", "68", "69", "70", "71", "72", "73", "74", "75", "76", "77", "78", "79", "80", "81", "82", "83", "84", "85", "86", "87", "88", "89", "90", "91", "92", "93", "94", "95", "96", "97", "98", "99", "100", "101", "102", "103", "104" ] } ], "unrearranged_support": [], "rearranged_support": [], "paralogs": null, "curation": null, "curational_tags": null }, { "allele_description_id": "OGRDB:A01700", "allele_description_ref": "OGRDB:Mus musculus/NOD/ShiLtJ_IGK:IGKV-DFJE.1", "maintainer": "William Lees", "acknowledgements": null, "lab_address": "Birkbeck College, University of London, Malet Street, London", "release_version": 1, "release_date": "03-May-2022", "release_description": "https://www.amazon.co.uk/Metre-Metal-Blocked-Unblocker-Cleaner/dp/B00UNGS08K/ref=sr_1_18?keywords=drain+unblocker&qid=1651577716&sprefix=drain%2Caps%2C68&sr=8-18", "label": "IGKV0-DFJE*00", "sequence": "GAAAATGTGCTCACCCAGTCTCCAGCAATCATGTCTGCAACTCTAGGGGAGAAGGTCACCATGAGCTGCAGGGCCAGCTCAAATGTAAAGTACATGTACTGGTACCAGCAGAAGTCAGGTGCCTCCCCCAAACTATGGATTTATTACACATCCAACCTGGCTTCTGGAGTCCCAGCTCGCTTCAGTGGCAGTGGGTCTGGGACCTCTTATTCTCTCACAATCAGCAGCGTGGAGGCTGAAGATGCTGCCACTTATTACTGCCAGCAGTTTACTAGTTCCCCATCCA", "coding_sequence": "GAAAATGTGCTCACCCAGTCTCCAGCAATCATGTCTGCAACTCTAGGGGAGAAGGTCACCATGAGCTGCAGGGCCAGCTCAAATGTAAAGTACATGTACTGGTACCAGCAGAAGTCAGGTGCCTCCCCCAAACTATGGATTTATTACACATCCAACCTGGCTTCTGGAGTCCCAGCTCGCTTCAGTGGCAGTGGGTCTGGGACCTCTTATTCTCTCACAATCAGCAGCGTGGAGGCTGAAGATGCTGCCACTTATTACTGCCAGCAGTTTACTAGTTCCCCATCCA", "ext_3prime": null, "aliases": [ "Kos et al: IGKV4-50*01_S2188_NOD" ], "locus": "IGK", "chromosome": null, "sequence_type": "V", "functional": true, "inference_type": "Rearranged only", "species": { "id": "NCBITAXON:10090", "label": "Mus musculus" }, "species_subgroup": "NOD/ShiLtJ", "species_subgroup_type": "strain", "status": null, "gene_designation": null, "subgroup_designation": null, "allele_designation": null, "allele_similarity_cluster_designation": null, "allele_similarity_cluster_member_id": null, "gene_start": 1, "gene_end": 286, "utr_5_prime_start": null, "utr_5_prime_end": null, "leader_1_start": null, "leader_1_end": null, "leader_2_start": null, "leader_2_end": null, "v_rs_start": null, "v_rs_end": null, "v_gene_delineations": [ { "sequence_delineation_id": "1", "delineation_scheme": "IMGT", "unaligned_sequence": "GAAAATGTGCTCACCCAGTCTCCAGCAATCATGTCTGCAACTCTAGGGGAGAAGGTCACCATGAGCTGCAGGGCCAGCTCAAATGTAAAGTACATGTACTGGTACCAGCAGAAGTCAGGTGCCTCCCCCAAACTATGGATTTATTACACATCCAACCTGGCTTCTGGAGTCCCAGCTCGCTTCAGTGGCAGTGGGTCTGGGACCTCTTATTCTCTCACAATCAGCAGCGTGGAGGCTGAAGATGCTGCCACTTATTACTGCCAGCAGTTTACTAGTTCCCCATCCA", "aligned_sequence": "GAAAATGTGCTCACCCAGTCTCCAGCAATCATGTCTGCAACTCTAGGGGAGAAGGTCACCATGAGCTGCAGGGCCAGCTCAAATGTA.....................AAGTACATGTACTGGTACCAGCAGAAGTCAGGTGCCTCCCCCAAACTATGGATTTATTACACA.....................TCCAACCTGGCTTCTGGAGTCCCA...GCTCGCTTCAGTGGCAGTGGG......TCTGGGACCTCTTATTCTCTCACAATCAGCAGCGTGGAGGCTGAAGATGCTGCCACTTATTACTGCCAGCAGTTTACTAGTTCCCCATCCA", "fwr1_start": 1, "fwr1_end": 78, "cdr1_start": 79, "cdr1_end": 93, "fwr2_start": 94, "fwr2_end": 144, "cdr2_start": 145, "cdr2_end": 153, "fwr3_start": 154, "fwr3_end": 261, "cdr3_start": 262, "alignment_labels": [ "1", "2", "3", "4", "5", "6", "7", "8", "9", "10", "11", "12", "13", "14", "15", "16", "17", "18", "19", "20", "21", "22", "23", "24", "25", "26", "27", "28", "29", "30", "31", "32", "33", "34", "35", "36", "37", "38", "39", "40", "41", "42", "43", "44", "45", "46", "47", "48", "49", "50", "51", "52", "53", "54", "55", "56", "57", "58", "59", "60", "61", "62", "63", "64", "65", "66", "67", "68", "69", "70", "71", "72", "73", "74", "75", "76", "77", "78", "79", "80", "81", "82", "83", "84", "85", "86", "87", "88", "89", "90", "91", "92", "93", "94", "95", "96", "97", "98", "99", "100", "101", "102", "103", "104" ] } ], "unrearranged_support": [], "rearranged_support": [], "paralogs": null, "curation": null, "curational_tags": null }, { "allele_description_id": "OGRDB:A01707", "allele_description_ref": "OGRDB:Mus musculus/NOD/ShiLtJ_IGK:IGKV-DHMF.1", "maintainer": "William Lees", "acknowledgements": null, "lab_address": "Birkbeck College, University of London, Malet Street, London", "release_version": 1, "release_date": "03-May-2022", "release_description": "https://www.amazon.co.uk/Metre-Metal-Blocked-Unblocker-Cleaner/dp/B00UNGS08K/ref=sr_1_18?keywords=drain+unblocker&qid=1651577716&sprefix=drain%2Caps%2C68&sr=8-18", "label": "IGKV0-DHMF*00", "sequence": "GAAAATGTGCTGACCCAGTCTCCAGCAATCATGGCTGCATCTCCAGGGGAGAAGGTCACCATGACCTGCAGTGCCAGCTCAAGTGTAAGTTCTGGTAACTTTCACTGGTACCAGCAGAAGCCAGGCACTTCTCCCAAACTCTGGATTTATAGGACATCCAACCTGGCTTCTGGAGTCCCCGCTCGCTTCAGTGGCAGTGGGTCTGGGACCTCTTACTCTCTTACAATCAGCAGCATGGAGGCCGAAGATGCTGCCACTTATTACTGCCAGCAGTGGAGTGGTTACCCACCCA", "coding_sequence": "GAAAATGTGCTGACCCAGTCTCCAGCAATCATGGCTGCATCTCCAGGGGAGAAGGTCACCATGACCTGCAGTGCCAGCTCAAGTGTAAGTTCTGGTAACTTTCACTGGTACCAGCAGAAGCCAGGCACTTCTCCCAAACTCTGGATTTATAGGACATCCAACCTGGCTTCTGGAGTCCCCGCTCGCTTCAGTGGCAGTGGGTCTGGGACCTCTTACTCTCTTACAATCAGCAGCATGGAGGCCGAAGATGCTGCCACTTATTACTGCCAGCAGTGGAGTGGTTACCCACCCA", "ext_3prime": null, "aliases": [ "Kos et al: IGKV4-81*01_S2422_NOD" ], "locus": "IGK", "chromosome": null, "sequence_type": "V", "functional": true, "inference_type": "Rearranged only", "species": { "id": "NCBITAXON:10090", "label": "Mus musculus" }, "species_subgroup": "NOD/ShiLtJ", "species_subgroup_type": "strain", "status": null, "gene_designation": null, "subgroup_designation": null, "allele_designation": null, "allele_similarity_cluster_designation": null, "allele_similarity_cluster_member_id": null, "gene_start": 1, "gene_end": 292, "utr_5_prime_start": null, "utr_5_prime_end": null, "leader_1_start": null, "leader_1_end": null, "leader_2_start": null, "leader_2_end": null, "v_rs_start": null, "v_rs_end": null, "v_gene_delineations": [ { "sequence_delineation_id": "1", "delineation_scheme": "IMGT", "unaligned_sequence": "GAAAATGTGCTGACCCAGTCTCCAGCAATCATGGCTGCATCTCCAGGGGAGAAGGTCACCATGACCTGCAGTGCCAGCTCAAGTGTAAGTTCTGGTAACTTTCACTGGTACCAGCAGAAGCCAGGCACTTCTCCCAAACTCTGGATTTATAGGACATCCAACCTGGCTTCTGGAGTCCCCGCTCGCTTCAGTGGCAGTGGGTCTGGGACCTCTTACTCTCTTACAATCAGCAGCATGGAGGCCGAAGATGCTGCCACTTATTACTGCCAGCAGTGGAGTGGTTACCCACCCA", "aligned_sequence": "GAAAATGTGCTGACCCAGTCTCCAGCAATCATGGCTGCATCTCCAGGGGAGAAGGTCACCATGACCTGCAGTGCCAGCTCAAGTGTAAGT...............TCTGGTAACTTTCACTGGTACCAGCAGAAGCCAGGCACTTCTCCCAAACTCTGGATTTATAGGACA.....................TCCAACCTGGCTTCTGGAGTCCCC...GCTCGCTTCAGTGGCAGTGGG......TCTGGGACCTCTTACTCTCTTACAATCAGCAGCATGGAGGCCGAAGATGCTGCCACTTATTACTGCCAGCAGTGGAGTGGTTACCCACCCA", "fwr1_start": 1, "fwr1_end": 78, "cdr1_start": 79, "cdr1_end": 99, "fwr2_start": 100, "fwr2_end": 150, "cdr2_start": 151, "cdr2_end": 159, "fwr3_start": 160, "fwr3_end": 267, "cdr3_start": 268, "alignment_labels": [ "1", "2", "3", "4", "5", "6", "7", "8", "9", "10", "11", "12", "13", "14", "15", "16", "17", "18", "19", "20", "21", "22", "23", "24", "25", "26", "27", "28", "29", "30", "31", "32", "33", "34", "35", "36", "37", "38", "39", "40", "41", "42", "43", "44", "45", "46", "47", "48", "49", "50", "51", "52", "53", "54", "55", "56", "57", "58", "59", "60", "61", "62", "63", "64", "65", "66", "67", "68", "69", "70", "71", "72", "73", "74", "75", "76", "77", "78", "79", "80", "81", "82", "83", "84", "85", "86", "87", "88", "89", "90", "91", "92", "93", "94", "95", "96", "97", "98", "99", "100", "101", "102", "103", "104" ] } ], "unrearranged_support": [], "rearranged_support": [], "paralogs": null, "curation": null, "curational_tags": null }, { "allele_description_id": "OGRDB:A01668", "allele_description_ref": "OGRDB:Mus musculus/NOD/ShiLtJ_IGK:IGKV-E6HQ.1", "maintainer": "William Lees", "acknowledgements": null, "lab_address": "Birkbeck College, University of London, Malet Street, London", "release_version": 1, "release_date": "03-May-2022", "release_description": "https://www.amazon.co.uk/Metre-Metal-Blocked-Unblocker-Cleaner/dp/B00UNGS08K/ref=sr_1_18?keywords=drain+unblocker&qid=1651577716&sprefix=drain%2Caps%2C68&sr=8-18", "label": "IGKV0-E6HQ*00", "sequence": "GACATCCAGATGACTCAGTCTCCAGCCTCCCTATCTGCATCTGTGGGAGAAACTGTCACCATCACATGTCGAGCAAGTGAGAATATTTACAGTAATTTAGCATGGTATCAGCAGAAACAGGGAAAATCTCCTCAGCTCCTGGTCTATGCTGCAACAAATTTAGCAGATGGTGTGCCATCAAGGTTCAGTGGCAGTGGATCAGGCACACAGTTTTCTCTGAAGATCAACAGCCTGCAGCCTGAAGATTTTGGGAGTTATTACTGTCAACATTTTTATGGTACTCCTCC", "coding_sequence": "GACATCCAGATGACTCAGTCTCCAGCCTCCCTATCTGCATCTGTGGGAGAAACTGTCACCATCACATGTCGAGCAAGTGAGAATATTTACAGTAATTTAGCATGGTATCAGCAGAAACAGGGAAAATCTCCTCAGCTCCTGGTCTATGCTGCAACAAATTTAGCAGATGGTGTGCCATCAAGGTTCAGTGGCAGTGGATCAGGCACACAGTTTTCTCTGAAGATCAACAGCCTGCAGCCTGAAGATTTTGGGAGTTATTACTGTCAACATTTTTATGGTACTCCTCC", "ext_3prime": null, "aliases": [ "Kos et al: IGKV12-46*01_S4541_NOD" ], "locus": "IGK", "chromosome": null, "sequence_type": "V", "functional": true, "inference_type": "Rearranged only", "species": { "id": "NCBITAXON:10090", "label": "Mus musculus" }, "species_subgroup": "NOD/ShiLtJ", "species_subgroup_type": "strain", "status": null, "gene_designation": null, "subgroup_designation": null, "allele_designation": null, "allele_similarity_cluster_designation": null, "allele_similarity_cluster_member_id": null, "gene_start": 1, "gene_end": 287, "utr_5_prime_start": null, "utr_5_prime_end": null, "leader_1_start": null, "leader_1_end": null, "leader_2_start": null, "leader_2_end": null, "v_rs_start": null, "v_rs_end": null, "v_gene_delineations": [ { "sequence_delineation_id": "1", "delineation_scheme": "IMGT", "unaligned_sequence": "GACATCCAGATGACTCAGTCTCCAGCCTCCCTATCTGCATCTGTGGGAGAAACTGTCACCATCACATGTCGAGCAAGTGAGAATATTTACAGTAATTTAGCATGGTATCAGCAGAAACAGGGAAAATCTCCTCAGCTCCTGGTCTATGCTGCAACAAATTTAGCAGATGGTGTGCCATCAAGGTTCAGTGGCAGTGGATCAGGCACACAGTTTTCTCTGAAGATCAACAGCCTGCAGCCTGAAGATTTTGGGAGTTATTACTGTCAACATTTTTATGGTACTCCTCC", "aligned_sequence": "GACATCCAGATGACTCAGTCTCCAGCCTCCCTATCTGCATCTGTGGGAGAAACTGTCACCATCACATGTCGAGCAAGTGAGAATATT..................TACAGTAATTTAGCATGGTATCAGCAGAAACAGGGAAAATCTCCTCAGCTCCTGGTCTATGCTGCA.....................ACAAATTTAGCAGATGGTGTGCCA...TCAAGGTTCAGTGGCAGTGGA......TCAGGCACACAGTTTTCTCTGAAGATCAACAGCCTGCAGCCTGAAGATTTTGGGAGTTATTACTGTCAACATTTTTATGGTACTCCTCC", "fwr1_start": 1, "fwr1_end": 78, "cdr1_start": 79, "cdr1_end": 96, "fwr2_start": 97, "fwr2_end": 147, "cdr2_start": 148, "cdr2_end": 156, "fwr3_start": 157, "fwr3_end": 264, "cdr3_start": 265, "alignment_labels": [ "1", "2", "3", "4", "5", "6", "7", "8", "9", "10", "11", "12", "13", "14", "15", "16", "17", "18", "19", "20", "21", "22", "23", "24", "25", "26", "27", "28", "29", "30", "31", "32", "33", "34", "35", "36", "37", "38", "39", "40", "41", "42", "43", "44", "45", "46", "47", "48", "49", "50", "51", "52", "53", "54", "55", "56", "57", "58", "59", "60", "61", "62", "63", "64", "65", "66", "67", "68", "69", "70", "71", "72", "73", "74", "75", "76", "77", "78", "79", "80", "81", "82", "83", "84", "85", "86", "87", "88", "89", "90", "91", "92", "93", "94", "95", "96", "97", "98", "99", "100", "101", "102", "103", "104" ] } ], "unrearranged_support": [], "rearranged_support": [], "paralogs": null, "curation": null, "curational_tags": null }, { "allele_description_id": "OGRDB:A01686", "allele_description_ref": "OGRDB:Mus musculus/NOD/ShiLtJ_IGK:IGKV-ELHN.1", "maintainer": "William Lees", "acknowledgements": null, "lab_address": "Birkbeck College, University of London, Malet Street, London", "release_version": 1, "release_date": "03-May-2022", "release_description": "https://www.amazon.co.uk/Metre-Metal-Blocked-Unblocker-Cleaner/dp/B00UNGS08K/ref=sr_1_18?keywords=drain+unblocker&qid=1651577716&sprefix=drain%2Caps%2C68&sr=8-18", "label": "IGKV0-ELHN*00", "sequence": "GAAATTGTGTTGACGCAGTCTATACCATCCCTGACTGTGTCAGCAGGAGAGAGGGTCACTATCAGCTGCAAATCCAATCAGAATCTTTTATGGAGTGGAAACCAAAGGTACTGTTTGGTCTGGCACCAGTGGAAACCAGGGCAAACTCCTACACCGTTGATCACCTGGACATCTGATAGATACTCTGGAGTCCCTGATCGTTTCATAGGCAGTGGATCTGTGACAGATTTCACTCTGACCATCAGCAGTGTGCAGGCTGAAGATGTGGCAGTTTATTTCTGTCAGCAGCATTTACACATTCCTCC", "coding_sequence": "GAAATTGTGTTGACGCAGTCTATACCATCCCTGACTGTGTCAGCAGGAGAGAGGGTCACTATCAGCTGCAAATCCAATCAGAATCTTTTATGGAGTGGAAACCAAAGGTACTGTTTGGTCTGGCACCAGTGGAAACCAGGGCAAACTCCTACACCGTTGATCACCTGGACATCTGATAGATACTCTGGAGTCCCTGATCGTTTCATAGGCAGTGGATCTGTGACAGATTTCACTCTGACCATCAGCAGTGTGCAGGCTGAAGATGTGGCAGTTTATTTCTGTCAGCAGCATTTACACATTCCTCC", "ext_3prime": null, "aliases": [ "Kos et al: IGKV8-16*01_S7495_NOD" ], "locus": "IGK", "chromosome": null, "sequence_type": "V", "functional": true, "inference_type": "Rearranged only", "species": { "id": "NCBITAXON:10090", "label": "Mus musculus" }, "species_subgroup": "NOD/ShiLtJ", "species_subgroup_type": "strain", "status": null, "gene_designation": null, "subgroup_designation": null, "allele_designation": null, "allele_similarity_cluster_designation": null, "allele_similarity_cluster_member_id": null, "gene_start": 1, "gene_end": 305, "utr_5_prime_start": null, "utr_5_prime_end": null, "leader_1_start": null, "leader_1_end": null, "leader_2_start": null, "leader_2_end": null, "v_rs_start": null, "v_rs_end": null, "v_gene_delineations": [ { "sequence_delineation_id": "1", "delineation_scheme": "IMGT", "unaligned_sequence": "GAAATTGTGTTGACGCAGTCTATACCATCCCTGACTGTGTCAGCAGGAGAGAGGGTCACTATCAGCTGCAAATCCAATCAGAATCTTTTATGGAGTGGAAACCAAAGGTACTGTTTGGTCTGGCACCAGTGGAAACCAGGGCAAACTCCTACACCGTTGATCACCTGGACATCTGATAGATACTCTGGAGTCCCTGATCGTTTCATAGGCAGTGGATCTGTGACAGATTTCACTCTGACCATCAGCAGTGTGCAGGCTGAAGATGTGGCAGTTTATTTCTGTCAGCAGCATTTACACATTCCTCC", "aligned_sequence": "GAAATTGTGTTGACGCAGTCTATACCATCCCTGACTGTGTCAGCAGGAGAGAGGGTCACTATCAGCTGCAAATCCAATCAGAATCTTTTATGGAGTGGAAACCAAAGGTACTGTTTGGTCTGGCACCAGTGGAAACCAGGGCAAACTCCTACACCGTTGATCACCTGGACA.....................TCTGATAGATACTCTGGAGTCCCT...GATCGTTTCATAGGCAGTGGA......TCTGTGACAGATTTCACTCTGACCATCAGCAGTGTGCAGGCTGAAGATGTGGCAGTTTATTTCTGTCAGCAGCATTTACACATTCCTCC", "fwr1_start": 1, "fwr1_end": 78, "cdr1_start": 79, "cdr1_end": 114, "fwr2_start": 115, "fwr2_end": 165, "cdr2_start": 166, "cdr2_end": 174, "fwr3_start": 175, "fwr3_end": 282, "cdr3_start": 283, "alignment_labels": [ "1", "2", "3", "4", "5", "6", "7", "8", "9", "10", "11", "12", "13", "14", "15", "16", "17", "18", "19", "20", "21", "22", "23", "24", "25", "26", "27", "28", "29", "30", "31", "32", "33", "34", "35", "36", "37", "38", "39", "40", "41", "42", "43", "44", "45", "46", "47", "48", "49", "50", "51", "52", "53", "54", "55", "56", "57", "58", "59", "60", "61", "62", "63", "64", "65", "66", "67", "68", "69", "70", "71", "72", "73", "74", "75", "76", "77", "78", "79", "80", "81", "82", "83", "84", "85", "86", "87", "88", "89", "90", "91", "92", "93", "94", "95", "96", "97", "98", "99", "100", "101", "102", "103", "104" ] } ], "unrearranged_support": [], "rearranged_support": [], "paralogs": null, "curation": null, "curational_tags": null }, { "allele_description_id": "OGRDB:A01682", "allele_description_ref": "OGRDB:Mus musculus/NOD/ShiLtJ_IGK:IGKV-FF67.1", "maintainer": "William Lees", "acknowledgements": null, "lab_address": "Birkbeck College, University of London, Malet Street, London", "release_version": 1, "release_date": "03-May-2022", "release_description": "https://www.amazon.co.uk/Metre-Metal-Blocked-Unblocker-Cleaner/dp/B00UNGS08K/ref=sr_1_18?keywords=drain+unblocker&qid=1651577716&sprefix=drain%2Caps%2C68&sr=8-18", "label": "IGKV0-FF67*00", "sequence": "GACATCCAGATGAACCAGTCTCCATCCAGTCTGTCTGCATCCCTCGGAGACACAATTACCATCACTTGCCGTGCCAGTCAGAACATTAATATTTGGTTAAGCTGGTACCAGCAGAAACCAGGAAATATTCCTAAACTATTGATCTATAAGGCTTCCAACTTGCACACAGGCGTCCCATCAAGGTTTAGTGGCAGTGGATCTGGAACAGATTTCACATTAACCATCAGCAGTCTGCAGCCTGAAGACATTGCCACTTACTACTGTCTACAGGGTCAAAGTTATCCTCT", "coding_sequence": "GACATCCAGATGAACCAGTCTCCATCCAGTCTGTCTGCATCCCTCGGAGACACAATTACCATCACTTGCCGTGCCAGTCAGAACATTAATATTTGGTTAAGCTGGTACCAGCAGAAACCAGGAAATATTCCTAAACTATTGATCTATAAGGCTTCCAACTTGCACACAGGCGTCCCATCAAGGTTTAGTGGCAGTGGATCTGGAACAGATTTCACATTAACCATCAGCAGTCTGCAGCCTGAAGACATTGCCACTTACTACTGTCTACAGGGTCAAAGTTATCCTCT", "ext_3prime": null, "aliases": [ "Kos et al: IGKV15-103*01_S0817_NOD" ], "locus": "IGK", "chromosome": null, "sequence_type": "V", "functional": true, "inference_type": "Rearranged only", "species": { "id": "NCBITAXON:10090", "label": "Mus musculus" }, "species_subgroup": "NOD/ShiLtJ", "species_subgroup_type": "strain", "status": null, "gene_designation": null, "subgroup_designation": null, "allele_designation": null, "allele_similarity_cluster_designation": null, "allele_similarity_cluster_member_id": null, "gene_start": 1, "gene_end": 287, "utr_5_prime_start": null, "utr_5_prime_end": null, "leader_1_start": null, "leader_1_end": null, "leader_2_start": null, "leader_2_end": null, "v_rs_start": null, "v_rs_end": null, "v_gene_delineations": [ { "sequence_delineation_id": "1", "delineation_scheme": "IMGT", "unaligned_sequence": "GACATCCAGATGAACCAGTCTCCATCCAGTCTGTCTGCATCCCTCGGAGACACAATTACCATCACTTGCCGTGCCAGTCAGAACATTAATATTTGGTTAAGCTGGTACCAGCAGAAACCAGGAAATATTCCTAAACTATTGATCTATAAGGCTTCCAACTTGCACACAGGCGTCCCATCAAGGTTTAGTGGCAGTGGATCTGGAACAGATTTCACATTAACCATCAGCAGTCTGCAGCCTGAAGACATTGCCACTTACTACTGTCTACAGGGTCAAAGTTATCCTCT", "aligned_sequence": "GACATCCAGATGAACCAGTCTCCATCCAGTCTGTCTGCATCCCTCGGAGACACAATTACCATCACTTGCCGTGCCAGTCAGAACATT..................AATATTTGGTTAAGCTGGTACCAGCAGAAACCAGGAAATATTCCTAAACTATTGATCTATAAGGCT.....................TCCAACTTGCACACAGGCGTCCCA...TCAAGGTTTAGTGGCAGTGGA......TCTGGAACAGATTTCACATTAACCATCAGCAGTCTGCAGCCTGAAGACATTGCCACTTACTACTGTCTACAGGGTCAAAGTTATCCTCT", "fwr1_start": 1, "fwr1_end": 78, "cdr1_start": 79, "cdr1_end": 96, "fwr2_start": 97, "fwr2_end": 147, "cdr2_start": 148, "cdr2_end": 156, "fwr3_start": 157, "fwr3_end": 264, "cdr3_start": 265, "alignment_labels": [ "1", "2", "3", "4", "5", "6", "7", "8", "9", "10", "11", "12", "13", "14", "15", "16", "17", "18", "19", "20", "21", "22", "23", "24", "25", "26", "27", "28", "29", "30", "31", "32", "33", "34", "35", "36", "37", "38", "39", "40", "41", "42", "43", "44", "45", "46", "47", "48", "49", "50", "51", "52", "53", "54", "55", "56", "57", "58", "59", "60", "61", "62", "63", "64", "65", "66", "67", "68", "69", "70", "71", "72", "73", "74", "75", "76", "77", "78", "79", "80", "81", "82", "83", "84", "85", "86", "87", "88", "89", "90", "91", "92", "93", "94", "95", "96", "97", "98", "99", "100", "101", "102", "103", "104" ] } ], "unrearranged_support": [], "rearranged_support": [], "paralogs": null, "curation": null, "curational_tags": null }, { "allele_description_id": "OGRDB:A01722", "allele_description_ref": "OGRDB:Mus musculus/NOD/ShiLtJ_IGK:IGKV-FSGA.1", "maintainer": "William Lees", "acknowledgements": null, "lab_address": "Birkbeck College, University of London, Malet Street, London", "release_version": 1, "release_date": "03-May-2022", "release_description": "https://www.amazon.co.uk/Metre-Metal-Blocked-Unblocker-Cleaner/dp/B00UNGS08K/ref=sr_1_18?keywords=drain+unblocker&qid=1651577716&sprefix=drain%2Caps%2C68&sr=8-18", "label": "IGKV0-FSGA*00", "sequence": "GATGTCCAGATAACCCAGTCTCCATCTTATCTTGCTGCATCTCCTGGAGAAACCATTACTATTAATTGCAGGGCAAGTAAGAGCATTAGCAAATATTTAGCCTGGTATCAAGAGAAACCTGGGAAAACTAATAAGCTTCTTATCTACTCTGGATCCACTTTGCAATCTGGAATTCCATCAAGGTTCAGTGGCAGTGGATCTGGTACAGATTTCACTCTCACCATCAGTAGCCTGGAGCCTGAAGATTTTGCAATGTATTACTGTCAACAACATAATGAATCCCCGTAC", "coding_sequence": "GATGTCCAGATAACCCAGTCTCCATCTTATCTTGCTGCATCTCCTGGAGAAACCATTACTATTAATTGCAGGGCAAGTAAGAGCATTAGCAAATATTTAGCCTGGTATCAAGAGAAACCTGGGAAAACTAATAAGCTTCTTATCTACTCTGGATCCACTTTGCAATCTGGAATTCCATCAAGGTTCAGTGGCAGTGGATCTGGTACAGATTTCACTCTCACCATCAGTAGCCTGGAGCCTGAAGATTTTGCAATGTATTACTGTCAACAACATAATGAATCCCCGTAC", "ext_3prime": null, "aliases": [ "Kos et al: IGKV16-104*01_S8917_NOD" ], "locus": "IGK", "chromosome": null, "sequence_type": "V", "functional": true, "inference_type": "Rearranged only", "species": { "id": "NCBITAXON:10090", "label": "Mus musculus" }, "species_subgroup": "NOD/ShiLtJ", "species_subgroup_type": "strain", "status": null, "gene_designation": null, "subgroup_designation": null, "allele_designation": null, "allele_similarity_cluster_designation": null, "allele_similarity_cluster_member_id": null, "gene_start": 1, "gene_end": 288, "utr_5_prime_start": null, "utr_5_prime_end": null, "leader_1_start": null, "leader_1_end": null, "leader_2_start": null, "leader_2_end": null, "v_rs_start": null, "v_rs_end": null, "v_gene_delineations": [ { "sequence_delineation_id": "1", "delineation_scheme": "IMGT", "unaligned_sequence": "GATGTCCAGATAACCCAGTCTCCATCTTATCTTGCTGCATCTCCTGGAGAAACCATTACTATTAATTGCAGGGCAAGTAAGAGCATTAGCAAATATTTAGCCTGGTATCAAGAGAAACCTGGGAAAACTAATAAGCTTCTTATCTACTCTGGATCCACTTTGCAATCTGGAATTCCATCAAGGTTCAGTGGCAGTGGATCTGGTACAGATTTCACTCTCACCATCAGTAGCCTGGAGCCTGAAGATTTTGCAATGTATTACTGTCAACAACATAATGAATCCCCGTAC", "aligned_sequence": "GATGTCCAGATAACCCAGTCTCCATCTTATCTTGCTGCATCTCCTGGAGAAACCATTACTATTAATTGCAGGGCAAGTAAGAGCATT..................AGCAAATATTTAGCCTGGTATCAAGAGAAACCTGGGAAAACTAATAAGCTTCTTATCTACTCTGGA.....................TCCACTTTGCAATCTGGAATTCCA...TCAAGGTTCAGTGGCAGTGGA......TCTGGTACAGATTTCACTCTCACCATCAGTAGCCTGGAGCCTGAAGATTTTGCAATGTATTACTGTCAACAACATAATGAATCCCCGTAC", "fwr1_start": 1, "fwr1_end": 78, "cdr1_start": 79, "cdr1_end": 96, "fwr2_start": 97, "fwr2_end": 147, "cdr2_start": 148, "cdr2_end": 156, "fwr3_start": 157, "fwr3_end": 264, "cdr3_start": 265, "alignment_labels": [ "1", "2", "3", "4", "5", "6", "7", "8", "9", "10", "11", "12", "13", "14", "15", "16", "17", "18", "19", "20", "21", "22", "23", "24", "25", "26", "27", "28", "29", "30", "31", "32", "33", "34", "35", "36", "37", "38", "39", "40", "41", "42", "43", "44", "45", "46", "47", "48", "49", "50", "51", "52", "53", "54", "55", "56", "57", "58", "59", "60", "61", "62", "63", "64", "65", "66", "67", "68", "69", "70", "71", "72", "73", "74", "75", "76", "77", "78", "79", "80", "81", "82", "83", "84", "85", "86", "87", "88", "89", "90", "91", "92", "93", "94", "95", "96", "97", "98", "99", "100", "101", "102", "103", "104" ] } ], "unrearranged_support": [], "rearranged_support": [], "paralogs": null, "curation": null, "curational_tags": null }, { "allele_description_id": "OGRDB:A01690", "allele_description_ref": "OGRDB:Mus musculus/NOD/ShiLtJ_IGK:IGKV-GZFM.1", "maintainer": "William Lees", "acknowledgements": null, "lab_address": "Birkbeck College, University of London, Malet Street, London", "release_version": 1, "release_date": "03-May-2022", "release_description": "https://www.amazon.co.uk/Metre-Metal-Blocked-Unblocker-Cleaner/dp/B00UNGS08K/ref=sr_1_18?keywords=drain+unblocker&qid=1651577716&sprefix=drain%2Caps%2C68&sr=8-18", "label": "IGKV0-GZFM*00", "sequence": "GACATTGTGCTCACCCAATCTCCAGCTTCTTTGGCTGTGTCTCTAGGGCAGAGTGTCACCATCTCCTGCAGAGCCAGTGAAAGTGTTGAATATTATGGCACTAGTTTAATGCAGTGGTACCAACAGAAACCAGGACAGCCACCCAAACTCCTCATCTATGGTGCATCCAACGTAGAATCTGGGGTCCCTGCCAGGTTTAGTGGCAGTGGGTCTGGGACAGACTTCAGCCTCAACATCCATCCTGTGGAGGAGGATGATATTGCAATGTATTTCTGTCAGCAAAGTAGGAAGGTTCCTTC", "coding_sequence": "GACATTGTGCTCACCCAATCTCCAGCTTCTTTGGCTGTGTCTCTAGGGCAGAGTGTCACCATCTCCTGCAGAGCCAGTGAAAGTGTTGAATATTATGGCACTAGTTTAATGCAGTGGTACCAACAGAAACCAGGACAGCCACCCAAACTCCTCATCTATGGTGCATCCAACGTAGAATCTGGGGTCCCTGCCAGGTTTAGTGGCAGTGGGTCTGGGACAGACTTCAGCCTCAACATCCATCCTGTGGAGGAGGATGATATTGCAATGTATTTCTGTCAGCAAAGTAGGAAGGTTCCTTC", "ext_3prime": null, "aliases": [ "Kos et al: IGKV3-1*01_S7345_NOD" ], "locus": "IGK", "chromosome": null, "sequence_type": "V", "functional": true, "inference_type": "Rearranged only", "species": { "id": "NCBITAXON:10090", "label": "Mus musculus" }, "species_subgroup": "NOD/ShiLtJ", "species_subgroup_type": "strain", "status": null, "gene_designation": null, "subgroup_designation": null, "allele_designation": null, "allele_similarity_cluster_designation": null, "allele_similarity_cluster_member_id": null, "gene_start": 1, "gene_end": 299, "utr_5_prime_start": null, "utr_5_prime_end": null, "leader_1_start": null, "leader_1_end": null, "leader_2_start": null, "leader_2_end": null, "v_rs_start": null, "v_rs_end": null, "v_gene_delineations": [ { "sequence_delineation_id": "1", "delineation_scheme": "IMGT", "unaligned_sequence": "GACATTGTGCTCACCCAATCTCCAGCTTCTTTGGCTGTGTCTCTAGGGCAGAGTGTCACCATCTCCTGCAGAGCCAGTGAAAGTGTTGAATATTATGGCACTAGTTTAATGCAGTGGTACCAACAGAAACCAGGACAGCCACCCAAACTCCTCATCTATGGTGCATCCAACGTAGAATCTGGGGTCCCTGCCAGGTTTAGTGGCAGTGGGTCTGGGACAGACTTCAGCCTCAACATCCATCCTGTGGAGGAGGATGATATTGCAATGTATTTCTGTCAGCAAAGTAGGAAGGTTCCTTC", "aligned_sequence": "GACATTGTGCTCACCCAATCTCCAGCTTCTTTGGCTGTGTCTCTAGGGCAGAGTGTCACCATCTCCTGCAGAGCCAGTGAAAGTGTTGAATAT......TATGGCACTAGTTTAATGCAGTGGTACCAACAGAAACCAGGACAGCCACCCAAACTCCTCATCTATGGTGCA.....................TCCAACGTAGAATCTGGGGTCCCT...GCCAGGTTTAGTGGCAGTGGG......TCTGGGACAGACTTCAGCCTCAACATCCATCCTGTGGAGGAGGATGATATTGCAATGTATTTCTGTCAGCAAAGTAGGAAGGTTCCTTC", "fwr1_start": 1, "fwr1_end": 78, "cdr1_start": 79, "cdr1_end": 108, "fwr2_start": 109, "fwr2_end": 159, "cdr2_start": 160, "cdr2_end": 168, "fwr3_start": 169, "fwr3_end": 276, "cdr3_start": 277, "alignment_labels": [ "1", "2", "3", "4", "5", "6", "7", "8", "9", "10", "11", "12", "13", "14", "15", "16", "17", "18", "19", "20", "21", "22", "23", "24", "25", "26", "27", "28", "29", "30", "31", "32", "33", "34", "35", "36", "37", "38", "39", "40", "41", "42", "43", "44", "45", "46", "47", "48", "49", "50", "51", "52", "53", "54", "55", "56", "57", "58", "59", "60", "61", "62", "63", "64", "65", "66", "67", "68", "69", "70", "71", "72", "73", "74", "75", "76", "77", "78", "79", "80", "81", "82", "83", "84", "85", "86", "87", "88", "89", "90", "91", "92", "93", "94", "95", "96", "97", "98", "99", "100", "101", "102", "103", "104" ] } ], "unrearranged_support": [], "rearranged_support": [], "paralogs": null, "curation": null, "curational_tags": null }, { "allele_description_id": "OGRDB:A01715", "allele_description_ref": "OGRDB:Mus musculus/NOD/ShiLtJ_IGK:IGKV-GZH6.1", "maintainer": "William Lees", "acknowledgements": null, "lab_address": "Birkbeck College, University of London, Malet Street, London", "release_version": 1, "release_date": "03-May-2022", "release_description": "https://www.amazon.co.uk/Metre-Metal-Blocked-Unblocker-Cleaner/dp/B00UNGS08K/ref=sr_1_18?keywords=drain+unblocker&qid=1651577716&sprefix=drain%2Caps%2C68&sr=8-18", "label": "IGKV0-GZH6*00", "sequence": "GAAATTGTGCTCACCCAGTCTCCAGCACTCATGGCTGCATCTCCAGGGGAGAAGGTCACCATGACCTGCAGTGCCAGCTCAAGTGTAGGTTCCAGTTACTTGCACTGGTACCAGCAGAAGTCAGGAGCCTCCCCCAAACTCTGGATTTACGGCACATCCAACCTGGCTTCTGGAGTCCCTGCTTGCTTCAGTGGCAGTGGGTCTGGGACCTCTTACTCTCTCACAATCAGCAGCGTGGAGGCTGAAGATGATGCAACTTATTACTGCCAGCAGGGGTGGGATTACCCACTCA", "coding_sequence": "GAAATTGTGCTCACCCAGTCTCCAGCACTCATGGCTGCATCTCCAGGGGAGAAGGTCACCATGACCTGCAGTGCCAGCTCAAGTGTAGGTTCCAGTTACTTGCACTGGTACCAGCAGAAGTCAGGAGCCTCCCCCAAACTCTGGATTTACGGCACATCCAACCTGGCTTCTGGAGTCCCTGCTTGCTTCAGTGGCAGTGGGTCTGGGACCTCTTACTCTCTCACAATCAGCAGCGTGGAGGCTGAAGATGATGCAACTTATTACTGCCAGCAGGGGTGGGATTACCCACTCA", "ext_3prime": null, "aliases": [ "Kos et al: IGKV4-57-1*01_S1729_NOD" ], "locus": "IGK", "chromosome": null, "sequence_type": "V", "functional": true, "inference_type": "Rearranged only", "species": { "id": "NCBITAXON:10090", "label": "Mus musculus" }, "species_subgroup": "NOD/ShiLtJ", "species_subgroup_type": "strain", "status": null, "gene_designation": null, "subgroup_designation": null, "allele_designation": null, "allele_similarity_cluster_designation": null, "allele_similarity_cluster_member_id": null, "gene_start": 1, "gene_end": 292, "utr_5_prime_start": null, "utr_5_prime_end": null, "leader_1_start": null, "leader_1_end": null, "leader_2_start": null, "leader_2_end": null, "v_rs_start": null, "v_rs_end": null, "v_gene_delineations": [ { "sequence_delineation_id": "1", "delineation_scheme": "IMGT", "unaligned_sequence": "GAAATTGTGCTCACCCAGTCTCCAGCACTCATGGCTGCATCTCCAGGGGAGAAGGTCACCATGACCTGCAGTGCCAGCTCAAGTGTAGGTTCCAGTTACTTGCACTGGTACCAGCAGAAGTCAGGAGCCTCCCCCAAACTCTGGATTTACGGCACATCCAACCTGGCTTCTGGAGTCCCTGCTTGCTTCAGTGGCAGTGGGTCTGGGACCTCTTACTCTCTCACAATCAGCAGCGTGGAGGCTGAAGATGATGCAACTTATTACTGCCAGCAGGGGTGGGATTACCCACTCA", "aligned_sequence": "GAAATTGTGCTCACCCAGTCTCCAGCACTCATGGCTGCATCTCCAGGGGAGAAGGTCACCATGACCTGCAGTGCCAGCTCAAGTGTAGGT...............TCCAGTTACTTGCACTGGTACCAGCAGAAGTCAGGAGCCTCCCCCAAACTCTGGATTTACGGCACA.....................TCCAACCTGGCTTCTGGAGTCCCT...GCTTGCTTCAGTGGCAGTGGG......TCTGGGACCTCTTACTCTCTCACAATCAGCAGCGTGGAGGCTGAAGATGATGCAACTTATTACTGCCAGCAGGGGTGGGATTACCCACTCA", "fwr1_start": 1, "fwr1_end": 78, "cdr1_start": 79, "cdr1_end": 99, "fwr2_start": 100, "fwr2_end": 150, "cdr2_start": 151, "cdr2_end": 159, "fwr3_start": 160, "fwr3_end": 267, "cdr3_start": 268, "alignment_labels": [ "1", "2", "3", "4", "5", "6", "7", "8", "9", "10", "11", "12", "13", "14", "15", "16", "17", "18", "19", "20", "21", "22", "23", "24", "25", "26", "27", "28", "29", "30", "31", "32", "33", "34", "35", "36", "37", "38", "39", "40", "41", "42", "43", "44", "45", "46", "47", "48", "49", "50", "51", "52", "53", "54", "55", "56", "57", "58", "59", "60", "61", "62", "63", "64", "65", "66", "67", "68", "69", "70", "71", "72", "73", "74", "75", "76", "77", "78", "79", "80", "81", "82", "83", "84", "85", "86", "87", "88", "89", "90", "91", "92", "93", "94", "95", "96", "97", "98", "99", "100", "101", "102", "103", "104" ] } ], "unrearranged_support": [], "rearranged_support": [], "paralogs": null, "curation": null, "curational_tags": null }, { "allele_description_id": "OGRDB:A01670", "allele_description_ref": "OGRDB:Mus musculus/NOD/ShiLtJ_IGK:IGKV-HF7G.1", "maintainer": "William Lees", "acknowledgements": null, "lab_address": "Birkbeck College, University of London, Malet Street, London", "release_version": 1, "release_date": "03-May-2022", "release_description": "https://www.amazon.co.uk/Metre-Metal-Blocked-Unblocker-Cleaner/dp/B00UNGS08K/ref=sr_1_18?keywords=drain+unblocker&qid=1651577716&sprefix=drain%2Caps%2C68&sr=8-18", "label": "IGKV0-HF7G*00", "sequence": "GACATTGTGATGACCCAGTCTCAAAAATTCATGTCCACATCAGTAGGAGACAGGGTCAGCATCAGCTGCAAGGCCAGTCAGAATGTGGGTAATATTATAGCCTGGTATCAACAGAAACCAGGGCAATCTCCTAAAGCACTGATTTACTTGGCATCCTACCGGTACAGTGGAGTCCCTGATCGCTTCACAGGCAGTGGATCTGGGACAGATTTCACTCTCACCATTAGCAATGTGCAGTCTGAAGACTTGGCAGAGTATTTCTGTCAGCAATATAGCAGCTCTCCTCT", "coding_sequence": "GACATTGTGATGACCCAGTCTCAAAAATTCATGTCCACATCAGTAGGAGACAGGGTCAGCATCAGCTGCAAGGCCAGTCAGAATGTGGGTAATATTATAGCCTGGTATCAACAGAAACCAGGGCAATCTCCTAAAGCACTGATTTACTTGGCATCCTACCGGTACAGTGGAGTCCCTGATCGCTTCACAGGCAGTGGATCTGGGACAGATTTCACTCTCACCATTAGCAATGTGCAGTCTGAAGACTTGGCAGAGTATTTCTGTCAGCAATATAGCAGCTCTCCTCT", "ext_3prime": null, "aliases": [ "Kos et al: IGKV6-15*01_S9105_NOD" ], "locus": "IGK", "chromosome": null, "sequence_type": "V", "functional": true, "inference_type": "Rearranged only", "species": { "id": "NCBITAXON:10090", "label": "Mus musculus" }, "species_subgroup": "NOD/ShiLtJ", "species_subgroup_type": "strain", "status": null, "gene_designation": null, "subgroup_designation": null, "allele_designation": null, "allele_similarity_cluster_designation": null, "allele_similarity_cluster_member_id": null, "gene_start": 1, "gene_end": 287, "utr_5_prime_start": null, "utr_5_prime_end": null, "leader_1_start": null, "leader_1_end": null, "leader_2_start": null, "leader_2_end": null, "v_rs_start": null, "v_rs_end": null, "v_gene_delineations": [ { "sequence_delineation_id": "1", "delineation_scheme": "IMGT", "unaligned_sequence": "GACATTGTGATGACCCAGTCTCAAAAATTCATGTCCACATCAGTAGGAGACAGGGTCAGCATCAGCTGCAAGGCCAGTCAGAATGTGGGTAATATTATAGCCTGGTATCAACAGAAACCAGGGCAATCTCCTAAAGCACTGATTTACTTGGCATCCTACCGGTACAGTGGAGTCCCTGATCGCTTCACAGGCAGTGGATCTGGGACAGATTTCACTCTCACCATTAGCAATGTGCAGTCTGAAGACTTGGCAGAGTATTTCTGTCAGCAATATAGCAGCTCTCCTCT", "aligned_sequence": "GACATTGTGATGACCCAGTCTCAAAAATTCATGTCCACATCAGTAGGAGACAGGGTCAGCATCAGCTGCAAGGCCAGTCAGAATGTG..................GGTAATATTATAGCCTGGTATCAACAGAAACCAGGGCAATCTCCTAAAGCACTGATTTACTTGGCA.....................TCCTACCGGTACAGTGGAGTCCCT...GATCGCTTCACAGGCAGTGGA......TCTGGGACAGATTTCACTCTCACCATTAGCAATGTGCAGTCTGAAGACTTGGCAGAGTATTTCTGTCAGCAATATAGCAGCTCTCCTCT", "fwr1_start": 1, "fwr1_end": 78, "cdr1_start": 79, "cdr1_end": 96, "fwr2_start": 97, "fwr2_end": 147, "cdr2_start": 148, "cdr2_end": 156, "fwr3_start": 157, "fwr3_end": 264, "cdr3_start": 265, "alignment_labels": [ "1", "2", "3", "4", "5", "6", "7", "8", "9", "10", "11", "12", "13", "14", "15", "16", "17", "18", "19", "20", "21", "22", "23", "24", "25", "26", "27", "28", "29", "30", "31", "32", "33", "34", "35", "36", "37", "38", "39", "40", "41", "42", "43", "44", "45", "46", "47", "48", "49", "50", "51", "52", "53", "54", "55", "56", "57", "58", "59", "60", "61", "62", "63", "64", "65", "66", "67", "68", "69", "70", "71", "72", "73", "74", "75", "76", "77", "78", "79", "80", "81", "82", "83", "84", "85", "86", "87", "88", "89", "90", "91", "92", "93", "94", "95", "96", "97", "98", "99", "100", "101", "102", "103", "104" ] } ], "unrearranged_support": [], "rearranged_support": [], "paralogs": null, "curation": null, "curational_tags": null }, { "allele_description_id": "OGRDB:A01676", "allele_description_ref": "OGRDB:Mus musculus/NOD/ShiLtJ_IGK:IGKV-IHM3.1", "maintainer": "William Lees", "acknowledgements": null, "lab_address": "Birkbeck College, University of London, Malet Street, London", "release_version": 1, "release_date": "03-May-2022", "release_description": "https://www.amazon.co.uk/Metre-Metal-Blocked-Unblocker-Cleaner/dp/B00UNGS08K/ref=sr_1_18?keywords=drain+unblocker&qid=1651577716&sprefix=drain%2Caps%2C68&sr=8-18", "label": "IGKV0-IHM3*00", "sequence": "GACATCCAGATGACTCAGTCTCCAGCCTCCCTATCTGTATCTGTGGGAGAAACTGTCACCATCACATGTCGAGCAAGTGAGAATATTTACAGTAATTTAGCATGGTATCAGCAGAAACAGGGAAAATCTCCTCAGCTCCTGGTCTATGCTGCAACAAACTTAGCAGATGGTGTTCCATCAAGGTTCAGTGGCAGTGGATCAGGCACACAGTATTCCCTCAAGATCAACAGCCTGCAGTCTGAAGATTTTGGGAGTTATTACTGTCAACATTTTTGGGGTACTCCTCC", "coding_sequence": "GACATCCAGATGACTCAGTCTCCAGCCTCCCTATCTGTATCTGTGGGAGAAACTGTCACCATCACATGTCGAGCAAGTGAGAATATTTACAGTAATTTAGCATGGTATCAGCAGAAACAGGGAAAATCTCCTCAGCTCCTGGTCTATGCTGCAACAAACTTAGCAGATGGTGTTCCATCAAGGTTCAGTGGCAGTGGATCAGGCACACAGTATTCCCTCAAGATCAACAGCCTGCAGTCTGAAGATTTTGGGAGTTATTACTGTCAACATTTTTGGGGTACTCCTCC", "ext_3prime": null, "aliases": [ "Kos et al: IGKV12-46*01_S4026_NOD" ], "locus": "IGK", "chromosome": null, "sequence_type": "V", "functional": true, "inference_type": "Rearranged only", "species": { "id": "NCBITAXON:10090", "label": "Mus musculus" }, "species_subgroup": "NOD/ShiLtJ", "species_subgroup_type": "strain", "status": null, "gene_designation": null, "subgroup_designation": null, "allele_designation": null, "allele_similarity_cluster_designation": null, "allele_similarity_cluster_member_id": null, "gene_start": 1, "gene_end": 287, "utr_5_prime_start": null, "utr_5_prime_end": null, "leader_1_start": null, "leader_1_end": null, "leader_2_start": null, "leader_2_end": null, "v_rs_start": null, "v_rs_end": null, "v_gene_delineations": [ { "sequence_delineation_id": "1", "delineation_scheme": "IMGT", "unaligned_sequence": "GACATCCAGATGACTCAGTCTCCAGCCTCCCTATCTGTATCTGTGGGAGAAACTGTCACCATCACATGTCGAGCAAGTGAGAATATTTACAGTAATTTAGCATGGTATCAGCAGAAACAGGGAAAATCTCCTCAGCTCCTGGTCTATGCTGCAACAAACTTAGCAGATGGTGTTCCATCAAGGTTCAGTGGCAGTGGATCAGGCACACAGTATTCCCTCAAGATCAACAGCCTGCAGTCTGAAGATTTTGGGAGTTATTACTGTCAACATTTTTGGGGTACTCCTCC", "aligned_sequence": "GACATCCAGATGACTCAGTCTCCAGCCTCCCTATCTGTATCTGTGGGAGAAACTGTCACCATCACATGTCGAGCAAGTGAGAATATT..................TACAGTAATTTAGCATGGTATCAGCAGAAACAGGGAAAATCTCCTCAGCTCCTGGTCTATGCTGCA.....................ACAAACTTAGCAGATGGTGTTCCA...TCAAGGTTCAGTGGCAGTGGA......TCAGGCACACAGTATTCCCTCAAGATCAACAGCCTGCAGTCTGAAGATTTTGGGAGTTATTACTGTCAACATTTTTGGGGTACTCCTCC", "fwr1_start": 1, "fwr1_end": 78, "cdr1_start": 79, "cdr1_end": 96, "fwr2_start": 97, "fwr2_end": 147, "cdr2_start": 148, "cdr2_end": 156, "fwr3_start": 157, "fwr3_end": 264, "cdr3_start": 265, "alignment_labels": [ "1", "2", "3", "4", "5", "6", "7", "8", "9", "10", "11", "12", "13", "14", "15", "16", "17", "18", "19", "20", "21", "22", "23", "24", "25", "26", "27", "28", "29", "30", "31", "32", "33", "34", "35", "36", "37", "38", "39", "40", "41", "42", "43", "44", "45", "46", "47", "48", "49", "50", "51", "52", "53", "54", "55", "56", "57", "58", "59", "60", "61", "62", "63", "64", "65", "66", "67", "68", "69", "70", "71", "72", "73", "74", "75", "76", "77", "78", "79", "80", "81", "82", "83", "84", "85", "86", "87", "88", "89", "90", "91", "92", "93", "94", "95", "96", "97", "98", "99", "100", "101", "102", "103", "104" ] } ], "unrearranged_support": [], "rearranged_support": [], "paralogs": null, "curation": null, "curational_tags": null }, { "allele_description_id": "OGRDB:A01671", "allele_description_ref": "OGRDB:Mus musculus/NOD/ShiLtJ_IGK:IGKV-J6WR.1", "maintainer": "William Lees", "acknowledgements": null, "lab_address": "Birkbeck College, University of London, Malet Street, London", "release_version": 1, "release_date": "03-May-2022", "release_description": "https://www.amazon.co.uk/Metre-Metal-Blocked-Unblocker-Cleaner/dp/B00UNGS08K/ref=sr_1_18?keywords=drain+unblocker&qid=1651577716&sprefix=drain%2Caps%2C68&sr=8-18", "label": "IGKV0-J6WR*00", "sequence": "GACATCCAGATGACTCAGTCTCCAGCCTCCCTATCTGCATCTGTGGGAGAAACTGTCACCATCACATGTCGAGCAAGTGAGAATATTTACAGTTATTTAGCATGGTATCAGCAGAAACAGGGAAAATCTCCTCAGCTCCTGGTCTATAATGCAAAAACCTTAGCAGAAGGTGTGCCATCAAGGTTCAGTGGCAGTGGATCAGGCACACAGTTTTCTCTGAAGATCAACAGCCTGCAGCCTGAAGATTTTGGGAGTTATTACTGTCAACATCATTATGGTACTCCTCC", "coding_sequence": "GACATCCAGATGACTCAGTCTCCAGCCTCCCTATCTGCATCTGTGGGAGAAACTGTCACCATCACATGTCGAGCAAGTGAGAATATTTACAGTTATTTAGCATGGTATCAGCAGAAACAGGGAAAATCTCCTCAGCTCCTGGTCTATAATGCAAAAACCTTAGCAGAAGGTGTGCCATCAAGGTTCAGTGGCAGTGGATCAGGCACACAGTTTTCTCTGAAGATCAACAGCCTGCAGCCTGAAGATTTTGGGAGTTATTACTGTCAACATCATTATGGTACTCCTCC", "ext_3prime": null, "aliases": [ "Kos et al: IGKV12-44*01_NOD" ], "locus": "IGK", "chromosome": null, "sequence_type": "V", "functional": true, "inference_type": "Rearranged only", "species": { "id": "NCBITAXON:10090", "label": "Mus musculus" }, "species_subgroup": "NOD/ShiLtJ", "species_subgroup_type": "strain", "status": null, "gene_designation": null, "subgroup_designation": null, "allele_designation": null, "allele_similarity_cluster_designation": null, "allele_similarity_cluster_member_id": null, "gene_start": 1, "gene_end": 287, "utr_5_prime_start": null, "utr_5_prime_end": null, "leader_1_start": null, "leader_1_end": null, "leader_2_start": null, "leader_2_end": null, "v_rs_start": null, "v_rs_end": null, "v_gene_delineations": [ { "sequence_delineation_id": "1", "delineation_scheme": "IMGT", "unaligned_sequence": "GACATCCAGATGACTCAGTCTCCAGCCTCCCTATCTGCATCTGTGGGAGAAACTGTCACCATCACATGTCGAGCAAGTGAGAATATTTACAGTTATTTAGCATGGTATCAGCAGAAACAGGGAAAATCTCCTCAGCTCCTGGTCTATAATGCAAAAACCTTAGCAGAAGGTGTGCCATCAAGGTTCAGTGGCAGTGGATCAGGCACACAGTTTTCTCTGAAGATCAACAGCCTGCAGCCTGAAGATTTTGGGAGTTATTACTGTCAACATCATTATGGTACTCCTCC", "aligned_sequence": "GACATCCAGATGACTCAGTCTCCAGCCTCCCTATCTGCATCTGTGGGAGAAACTGTCACCATCACATGTCGAGCAAGTGAGAATATT..................TACAGTTATTTAGCATGGTATCAGCAGAAACAGGGAAAATCTCCTCAGCTCCTGGTCTATAATGCA.....................AAAACCTTAGCAGAAGGTGTGCCA...TCAAGGTTCAGTGGCAGTGGA......TCAGGCACACAGTTTTCTCTGAAGATCAACAGCCTGCAGCCTGAAGATTTTGGGAGTTATTACTGTCAACATCATTATGGTACTCCTCC", "fwr1_start": 1, "fwr1_end": 78, "cdr1_start": 79, "cdr1_end": 96, "fwr2_start": 97, "fwr2_end": 147, "cdr2_start": 148, "cdr2_end": 156, "fwr3_start": 157, "fwr3_end": 264, "cdr3_start": 265, "alignment_labels": [ "1", "2", "3", "4", "5", "6", "7", "8", "9", "10", "11", "12", "13", "14", "15", "16", "17", "18", "19", "20", "21", "22", "23", "24", "25", "26", "27", "28", "29", "30", "31", "32", "33", "34", "35", "36", "37", "38", "39", "40", "41", "42", "43", "44", "45", "46", "47", "48", "49", "50", "51", "52", "53", "54", "55", "56", "57", "58", "59", "60", "61", "62", "63", "64", "65", "66", "67", "68", "69", "70", "71", "72", "73", "74", "75", "76", "77", "78", "79", "80", "81", "82", "83", "84", "85", "86", "87", "88", "89", "90", "91", "92", "93", "94", "95", "96", "97", "98", "99", "100", "101", "102", "103", "104" ] } ], "unrearranged_support": [], "rearranged_support": [], "paralogs": null, "curation": null, "curational_tags": null }, { "allele_description_id": "OGRDB:A01721", "allele_description_ref": "OGRDB:Mus musculus/NOD/ShiLtJ_IGK:IGKV-JRRB.1", "maintainer": "William Lees", "acknowledgements": null, "lab_address": "Birkbeck College, University of London, Malet Street, London", "release_version": 1, "release_date": "03-May-2022", "release_description": "https://www.amazon.co.uk/Metre-Metal-Blocked-Unblocker-Cleaner/dp/B00UNGS08K/ref=sr_1_18?keywords=drain+unblocker&qid=1651577716&sprefix=drain%2Caps%2C68&sr=8-18", "label": "IGKV0-JRRB*00", "sequence": "GATGTTGTGGTGACTCAAACTCCACTCTCCCTGCCTGTCAGCTTTGGAGATCAAGTTTCTATCTCTTGCAGGTCTAGTCAGAGTCTTGCAAACAGTTATGGGAACACCTATTTGTCTTGGTACCTGCACAAGCCTGGCCAGTCTCCACAGCTCCTCATCTATGGGATTTCCAACAGATTTTCCGGGGTGCCAGACAGGTTCAGTGGCAGTGGTTCAGGGACAGATTTCACACTCAAGATCAGCACAATAAAGCCTGAGGACTTGGGAATGTATTACTGCTTACAAGGTACACATCAGCCTCC", "coding_sequence": "GATGTTGTGGTGACTCAAACTCCACTCTCCCTGCCTGTCAGCTTTGGAGATCAAGTTTCTATCTCTTGCAGGTCTAGTCAGAGTCTTGCAAACAGTTATGGGAACACCTATTTGTCTTGGTACCTGCACAAGCCTGGCCAGTCTCCACAGCTCCTCATCTATGGGATTTCCAACAGATTTTCCGGGGTGCCAGACAGGTTCAGTGGCAGTGGTTCAGGGACAGATTTCACACTCAAGATCAGCACAATAAAGCCTGAGGACTTGGGAATGTATTACTGCTTACAAGGTACACATCAGCCTCC", "ext_3prime": null, "aliases": [ "Kos et al: IGKV1-88*01_S0716_NOD" ], "locus": "IGK", "chromosome": null, "sequence_type": "V", "functional": true, "inference_type": "Rearranged only", "species": { "id": "NCBITAXON:10090", "label": "Mus musculus" }, "species_subgroup": "NOD/ShiLtJ", "species_subgroup_type": "strain", "status": null, "gene_designation": null, "subgroup_designation": null, "allele_designation": null, "allele_similarity_cluster_designation": null, "allele_similarity_cluster_member_id": null, "gene_start": 1, "gene_end": 302, "utr_5_prime_start": null, "utr_5_prime_end": null, "leader_1_start": null, "leader_1_end": null, "leader_2_start": null, "leader_2_end": null, "v_rs_start": null, "v_rs_end": null, "v_gene_delineations": [ { "sequence_delineation_id": "1", "delineation_scheme": "IMGT", "unaligned_sequence": "GATGTTGTGGTGACTCAAACTCCACTCTCCCTGCCTGTCAGCTTTGGAGATCAAGTTTCTATCTCTTGCAGGTCTAGTCAGAGTCTTGCAAACAGTTATGGGAACACCTATTTGTCTTGGTACCTGCACAAGCCTGGCCAGTCTCCACAGCTCCTCATCTATGGGATTTCCAACAGATTTTCCGGGGTGCCAGACAGGTTCAGTGGCAGTGGTTCAGGGACAGATTTCACACTCAAGATCAGCACAATAAAGCCTGAGGACTTGGGAATGTATTACTGCTTACAAGGTACACATCAGCCTCC", "aligned_sequence": "GATGTTGTGGTGACTCAAACTCCACTCTCCCTGCCTGTCAGCTTTGGAGATCAAGTTTCTATCTCTTGCAGGTCTAGTCAGAGTCTTGCAAACAGT...TATGGGAACACCTATTTGTCTTGGTACCTGCACAAGCCTGGCCAGTCTCCACAGCTCCTCATCTATGGGATT.....................TCCAACAGATTTTCCGGGGTGCCA...GACAGGTTCAGTGGCAGTGGT......TCAGGGACAGATTTCACACTCAAGATCAGCACAATAAAGCCTGAGGACTTGGGAATGTATTACTGCTTACAAGGTACACATCAGCCTCC", "fwr1_start": 1, "fwr1_end": 78, "cdr1_start": 79, "cdr1_end": 111, "fwr2_start": 112, "fwr2_end": 162, "cdr2_start": 163, "cdr2_end": 171, "fwr3_start": 172, "fwr3_end": 279, "cdr3_start": 280, "alignment_labels": [ "1", "2", "3", "4", "5", "6", "7", "8", "9", "10", "11", "12", "13", "14", "15", "16", "17", "18", "19", "20", "21", "22", "23", "24", "25", "26", "27", "28", "29", "30", "31", "32", "33", "34", "35", "36", "37", "38", "39", "40", "41", "42", "43", "44", "45", "46", "47", "48", "49", "50", "51", "52", "53", "54", "55", "56", "57", "58", "59", "60", "61", "62", "63", "64", "65", "66", "67", "68", "69", "70", "71", "72", "73", "74", "75", "76", "77", "78", "79", "80", "81", "82", "83", "84", "85", "86", "87", "88", "89", "90", "91", "92", "93", "94", "95", "96", "97", "98", "99", "100", "101", "102", "103", "104" ] } ], "unrearranged_support": [], "rearranged_support": [], "paralogs": null, "curation": null, "curational_tags": null }, { "allele_description_id": "OGRDB:A01718", "allele_description_ref": "OGRDB:Mus musculus/NOD/ShiLtJ_IGK:IGKV-KCKY.1", "maintainer": "William Lees", "acknowledgements": null, "lab_address": "Birkbeck College, University of London, Malet Street, London", "release_version": 1, "release_date": "03-May-2022", "release_description": "https://www.amazon.co.uk/Metre-Metal-Blocked-Unblocker-Cleaner/dp/B00UNGS08K/ref=sr_1_18?keywords=drain+unblocker&qid=1651577716&sprefix=drain%2Caps%2C68&sr=8-18", "label": "IGKV0-KCKY*00", "sequence": "GACATCCAGATGACCCAGTCTCCATCCTCCTTATCTGCCTCTCTGGGAGAAAGAGTCAGTCTCACTTGTCGGGCAAGTCAGGAAATTAGTGGTTACTTAAGCTGGCTTCAGCAGAAACCAGATGGAACTATTAAACGCCTGATCTACAGCACATCCACTTTAGATTCTGGTGTCCCAAAAAGGTTCAGTGGCAGTAGGTCTGGGTCAGATTATTCTCTCACCATCAGCAGCCTTGAGTCTGAAGATTTTGCAGACTATTACTGTCTACAATATGCTAGTTCTCCT", "coding_sequence": "GACATCCAGATGACCCAGTCTCCATCCTCCTTATCTGCCTCTCTGGGAGAAAGAGTCAGTCTCACTTGTCGGGCAAGTCAGGAAATTAGTGGTTACTTAAGCTGGCTTCAGCAGAAACCAGATGGAACTATTAAACGCCTGATCTACAGCACATCCACTTTAGATTCTGGTGTCCCAAAAAGGTTCAGTGGCAGTAGGTCTGGGTCAGATTATTCTCTCACCATCAGCAGCCTTGAGTCTGAAGATTTTGCAGACTATTACTGTCTACAATATGCTAGTTCTCCT", "ext_3prime": null, "aliases": [ "Kos et al: IGKV9-124*01_S2023_NOD" ], "locus": "IGK", "chromosome": null, "sequence_type": "V", "functional": true, "inference_type": "Rearranged only", "species": { "id": "NCBITAXON:10090", "label": "Mus musculus" }, "species_subgroup": "NOD/ShiLtJ", "species_subgroup_type": "strain", "status": null, "gene_designation": null, "subgroup_designation": null, "allele_designation": null, "allele_similarity_cluster_designation": null, "allele_similarity_cluster_member_id": null, "gene_start": 1, "gene_end": 285, "utr_5_prime_start": null, "utr_5_prime_end": null, "leader_1_start": null, "leader_1_end": null, "leader_2_start": null, "leader_2_end": null, "v_rs_start": null, "v_rs_end": null, "v_gene_delineations": [ { "sequence_delineation_id": "1", "delineation_scheme": "IMGT", "unaligned_sequence": "GACATCCAGATGACCCAGTCTCCATCCTCCTTATCTGCCTCTCTGGGAGAAAGAGTCAGTCTCACTTGTCGGGCAAGTCAGGAAATTAGTGGTTACTTAAGCTGGCTTCAGCAGAAACCAGATGGAACTATTAAACGCCTGATCTACAGCACATCCACTTTAGATTCTGGTGTCCCAAAAAGGTTCAGTGGCAGTAGGTCTGGGTCAGATTATTCTCTCACCATCAGCAGCCTTGAGTCTGAAGATTTTGCAGACTATTACTGTCTACAATATGCTAGTTCTCCT", "aligned_sequence": "GACATCCAGATGACCCAGTCTCCATCCTCCTTATCTGCCTCTCTGGGAGAAAGAGTCAGTCTCACTTGTCGGGCAAGTCAGGAAATT..................AGTGGTTACTTAAGCTGGCTTCAGCAGAAACCAGATGGAACTATTAAACGCCTGATCTACAGCACA.....................TCCACTTTAGATTCTGGTGTCCCA...AAAAGGTTCAGTGGCAGTAGG......TCTGGGTCAGATTATTCTCTCACCATCAGCAGCCTTGAGTCTGAAGATTTTGCAGACTATTACTGTCTACAATATGCTAGTTCTCCT", "fwr1_start": 1, "fwr1_end": 78, "cdr1_start": 79, "cdr1_end": 96, "fwr2_start": 97, "fwr2_end": 147, "cdr2_start": 148, "cdr2_end": 156, "fwr3_start": 157, "fwr3_end": 264, "cdr3_start": 265, "alignment_labels": [ "1", "2", "3", "4", "5", "6", "7", "8", "9", "10", "11", "12", "13", "14", "15", "16", "17", "18", "19", "20", "21", "22", "23", "24", "25", "26", "27", "28", "29", "30", "31", "32", "33", "34", "35", "36", "37", "38", "39", "40", "41", "42", "43", "44", "45", "46", "47", "48", "49", "50", "51", "52", "53", "54", "55", "56", "57", "58", "59", "60", "61", "62", "63", "64", "65", "66", "67", "68", "69", "70", "71", "72", "73", "74", "75", "76", "77", "78", "79", "80", "81", "82", "83", "84", "85", "86", "87", "88", "89", "90", "91", "92", "93", "94", "95", "96", "97", "98", "99", "100", "101", "102", "103", "104" ] } ], "unrearranged_support": [], "rearranged_support": [], "paralogs": null, "curation": null, "curational_tags": null }, { "allele_description_id": "OGRDB:A01666", "allele_description_ref": "OGRDB:Mus musculus/NOD/ShiLtJ_IGK:IGKV-KSPN.1", "maintainer": "William Lees", "acknowledgements": null, "lab_address": "Birkbeck College, University of London, Malet Street, London", "release_version": 1, "release_date": "03-May-2022", "release_description": "https://www.amazon.co.uk/Metre-Metal-Blocked-Unblocker-Cleaner/dp/B00UNGS08K/ref=sr_1_18?keywords=drain+unblocker&qid=1651577716&sprefix=drain%2Caps%2C68&sr=8-18", "label": "IGKV0-KSPN*00", "sequence": "GACATTGTGATGTCACAGTCTCCATCCTCCCTGGCTGTGTCAGCAGGAGAGAAGGTCACTATGAGCTGCAAATCCAGTCAGAGTCTGTTCAACAGTAGAACCCGAAAGAACTACTTGGCTTGGTACCAGCAGAAACCAGGGCAGTCTCCTAAACTGCTGATCTACTGGGCATCCACTAGGGAATCTGGGGTCCCTGATCGCTTCACAGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGTGTGCAGGCTGAAGACCTGGCAGTTTATTACTGCAAGCAATCTTATTATCTTCC", "coding_sequence": "GACATTGTGATGTCACAGTCTCCATCCTCCCTGGCTGTGTCAGCAGGAGAGAAGGTCACTATGAGCTGCAAATCCAGTCAGAGTCTGTTCAACAGTAGAACCCGAAAGAACTACTTGGCTTGGTACCAGCAGAAACCAGGGCAGTCTCCTAAACTGCTGATCTACTGGGCATCCACTAGGGAATCTGGGGTCCCTGATCGCTTCACAGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGTGTGCAGGCTGAAGACCTGGCAGTTTATTACTGCAAGCAATCTTATTATCTTCC", "ext_3prime": null, "aliases": [ "Kos et al: IGKV8-21*01_S1419_NOD" ], "locus": "IGK", "chromosome": null, "sequence_type": "V", "functional": true, "inference_type": "Rearranged only", "species": { "id": "NCBITAXON:10090", "label": "Mus musculus" }, "species_subgroup": "NOD/ShiLtJ", "species_subgroup_type": "strain", "status": null, "gene_designation": null, "subgroup_designation": null, "allele_designation": null, "allele_similarity_cluster_designation": null, "allele_similarity_cluster_member_id": null, "gene_start": 1, "gene_end": 302, "utr_5_prime_start": null, "utr_5_prime_end": null, "leader_1_start": null, "leader_1_end": null, "leader_2_start": null, "leader_2_end": null, "v_rs_start": null, "v_rs_end": null, "v_gene_delineations": [ { "sequence_delineation_id": "1", "delineation_scheme": "IMGT", "unaligned_sequence": "GACATTGTGATGTCACAGTCTCCATCCTCCCTGGCTGTGTCAGCAGGAGAGAAGGTCACTATGAGCTGCAAATCCAGTCAGAGTCTGTTCAACAGTAGAACCCGAAAGAACTACTTGGCTTGGTACCAGCAGAAACCAGGGCAGTCTCCTAAACTGCTGATCTACTGGGCATCCACTAGGGAATCTGGGGTCCCTGATCGCTTCACAGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGTGTGCAGGCTGAAGACCTGGCAGTTTATTACTGCAAGCAATCTTATTATCTTCC", "aligned_sequence": "GACATTGTGATGTCACAGTCTCCATCCTCCCTGGCTGTGTCAGCAGGAGAGAAGGTCACTATGAGCTGCAAATCCAGTCAGAGTCTGTTCAACAGTAGAACCCGAAAGAACTACTTGGCTTGGTACCAGCAGAAACCAGGGCAGTCTCCTAAACTGCTGATCTACTGGGCA.....................TCCACTAGGGAATCTGGGGTCCCT...GATCGCTTCACAGGCAGTGGA......TCTGGGACAGATTTCACTCTCACCATCAGCAGTGTGCAGGCTGAAGACCTGGCAGTTTATTACTGCAAGCAATCTTATTATCTTCC", "fwr1_start": 1, "fwr1_end": 78, "cdr1_start": 79, "cdr1_end": 114, "fwr2_start": 115, "fwr2_end": 165, "cdr2_start": 166, "cdr2_end": 174, "fwr3_start": 175, "fwr3_end": 282, "cdr3_start": 283, "alignment_labels": [ "1", "2", "3", "4", "5", "6", "7", "8", "9", "10", "11", "12", "13", "14", "15", "16", "17", "18", "19", "20", "21", "22", "23", "24", "25", "26", "27", "28", "29", "30", "31", "32", "33", "34", "35", "36", "37", "38", "39", "40", "41", "42", "43", "44", "45", "46", "47", "48", "49", "50", "51", "52", "53", "54", "55", "56", "57", "58", "59", "60", "61", "62", "63", "64", "65", "66", "67", "68", "69", "70", "71", "72", "73", "74", "75", "76", "77", "78", "79", "80", "81", "82", "83", "84", "85", "86", "87", "88", "89", "90", "91", "92", "93", "94", "95", "96", "97", "98", "99", "100", "101", "102", "103", "104" ] } ], "unrearranged_support": [], "rearranged_support": [], "paralogs": null, "curation": null, "curational_tags": null }, { "allele_description_id": "OGRDB:A01697", "allele_description_ref": "OGRDB:Mus musculus/NOD/ShiLtJ_IGK:IGKV-L3TP.1", "maintainer": "William Lees", "acknowledgements": null, "lab_address": "Birkbeck College, University of London, Malet Street, London", "release_version": 1, "release_date": "03-May-2022", "release_description": "https://www.amazon.co.uk/Metre-Metal-Blocked-Unblocker-Cleaner/dp/B00UNGS08K/ref=sr_1_18?keywords=drain+unblocker&qid=1651577716&sprefix=drain%2Caps%2C68&sr=8-18", "label": "IGKV0-L3TP*00", "sequence": "GACATTGTGCTGACACAGTCTCCTGCTTCCTTAGCTGTATCTCTGGGGCAGAGGGCCACCATCTCCTGCAGGGCCAGCAAAAGTGTCAGTACATCTAGCTATAGTTACATGCACTGGTACCAACAGAAACCAGGACAGCCACCCAAACTCCTCATCAAGTATGCATCCTACCTAGAATCTGGGGTTCCTGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGACTTCACCCTCAACATCCATCCTGTGGAGGAGGAGGATGCTGCAACATATTACTGTCAGCACAGTAGGGAGTTTCCTCC", "coding_sequence": "GACATTGTGCTGACACAGTCTCCTGCTTCCTTAGCTGTATCTCTGGGGCAGAGGGCCACCATCTCCTGCAGGGCCAGCAAAAGTGTCAGTACATCTAGCTATAGTTACATGCACTGGTACCAACAGAAACCAGGACAGCCACCCAAACTCCTCATCAAGTATGCATCCTACCTAGAATCTGGGGTTCCTGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGACTTCACCCTCAACATCCATCCTGTGGAGGAGGAGGATGCTGCAACATATTACTGTCAGCACAGTAGGGAGTTTCCTCC", "ext_3prime": null, "aliases": [ "Kos et al: IGKV3-7*01_S6705_NOD" ], "locus": "IGK", "chromosome": null, "sequence_type": "V", "functional": true, "inference_type": "Rearranged only", "species": { "id": "NCBITAXON:10090", "label": "Mus musculus" }, "species_subgroup": "NOD/ShiLtJ", "species_subgroup_type": "strain", "status": null, "gene_designation": null, "subgroup_designation": null, "allele_designation": null, "allele_similarity_cluster_designation": null, "allele_similarity_cluster_member_id": null, "gene_start": 1, "gene_end": 299, "utr_5_prime_start": null, "utr_5_prime_end": null, "leader_1_start": null, "leader_1_end": null, "leader_2_start": null, "leader_2_end": null, "v_rs_start": null, "v_rs_end": null, "v_gene_delineations": [ { "sequence_delineation_id": "1", "delineation_scheme": "IMGT", "unaligned_sequence": "GACATTGTGCTGACACAGTCTCCTGCTTCCTTAGCTGTATCTCTGGGGCAGAGGGCCACCATCTCCTGCAGGGCCAGCAAAAGTGTCAGTACATCTAGCTATAGTTACATGCACTGGTACCAACAGAAACCAGGACAGCCACCCAAACTCCTCATCAAGTATGCATCCTACCTAGAATCTGGGGTTCCTGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGACTTCACCCTCAACATCCATCCTGTGGAGGAGGAGGATGCTGCAACATATTACTGTCAGCACAGTAGGGAGTTTCCTCC", "aligned_sequence": "GACATTGTGCTGACACAGTCTCCTGCTTCCTTAGCTGTATCTCTGGGGCAGAGGGCCACCATCTCCTGCAGGGCCAGCAAAAGTGTCAGTACA......TCTAGCTATAGTTACATGCACTGGTACCAACAGAAACCAGGACAGCCACCCAAACTCCTCATCAAGTATGCA.....................TCCTACCTAGAATCTGGGGTTCCT...GCCAGGTTCAGTGGCAGTGGG......TCTGGGACAGACTTCACCCTCAACATCCATCCTGTGGAGGAGGAGGATGCTGCAACATATTACTGTCAGCACAGTAGGGAGTTTCCTCC", "fwr1_start": 1, "fwr1_end": 78, "cdr1_start": 79, "cdr1_end": 108, "fwr2_start": 109, "fwr2_end": 159, "cdr2_start": 160, "cdr2_end": 168, "fwr3_start": 169, "fwr3_end": 276, "cdr3_start": 277, "alignment_labels": [ "1", "2", "3", "4", "5", "6", "7", "8", "9", "10", "11", "12", "13", "14", "15", "16", "17", "18", "19", "20", "21", "22", "23", "24", "25", "26", "27", "28", "29", "30", "31", "32", "33", "34", "35", "36", "37", "38", "39", "40", "41", "42", "43", "44", "45", "46", "47", "48", "49", "50", "51", "52", "53", "54", "55", "56", "57", "58", "59", "60", "61", "62", "63", "64", "65", "66", "67", "68", "69", "70", "71", "72", "73", "74", "75", "76", "77", "78", "79", "80", "81", "82", "83", "84", "85", "86", "87", "88", "89", "90", "91", "92", "93", "94", "95", "96", "97", "98", "99", "100", "101", "102", "103", "104" ] } ], "unrearranged_support": [], "rearranged_support": [], "paralogs": null, "curation": null, "curational_tags": null }, { "allele_description_id": "OGRDB:A01678", "allele_description_ref": "OGRDB:Mus musculus/NOD/ShiLtJ_IGK:IGKV-L4JY.1", "maintainer": "William Lees", "acknowledgements": null, "lab_address": "Birkbeck College, University of London, Malet Street, London", "release_version": 1, "release_date": "03-May-2022", "release_description": "https://www.amazon.co.uk/Metre-Metal-Blocked-Unblocker-Cleaner/dp/B00UNGS08K/ref=sr_1_18?keywords=drain+unblocker&qid=1651577716&sprefix=drain%2Caps%2C68&sr=8-18", "label": "IGKV0-L4JY*00", "sequence": "GATGTTGTGATGACTCAGACCCCACTCACTTTGTCGGTTACCATTGGACAACCAGCCTCCATCTCTTGCAAATCAAGTCAGAGCCTCTTACATAGTAATGGAAAGACATATTTGAATTGGTTATTACAGAGGCCAGGCCAGTCTCCAAAGCTCCTAATCTATCTGGTGTCTAAACTGGAATCTGGAGTCCCTGACAGGTTCAGTGGCAGTGGATCAGGGACAGATTTCACACTGAAAATCAGCAGAGTGGAGGCTGAGGATTTGGGAGTTTATTACTGCTTGCAAGCTACACATTTTCCTCA", "coding_sequence": "GATGTTGTGATGACTCAGACCCCACTCACTTTGTCGGTTACCATTGGACAACCAGCCTCCATCTCTTGCAAATCAAGTCAGAGCCTCTTACATAGTAATGGAAAGACATATTTGAATTGGTTATTACAGAGGCCAGGCCAGTCTCCAAAGCTCCTAATCTATCTGGTGTCTAAACTGGAATCTGGAGTCCCTGACAGGTTCAGTGGCAGTGGATCAGGGACAGATTTCACACTGAAAATCAGCAGAGTGGAGGCTGAGGATTTGGGAGTTTATTACTGCTTGCAAGCTACACATTTTCCTCA", "ext_3prime": null, "aliases": [ "Kos et al: IGKV1-135*01_S3001_NOD" ], "locus": "IGK", "chromosome": null, "sequence_type": "V", "functional": true, "inference_type": "Rearranged only", "species": { "id": "NCBITAXON:10090", "label": "Mus musculus" }, "species_subgroup": "NOD/ShiLtJ", "species_subgroup_type": "strain", "status": null, "gene_designation": null, "subgroup_designation": null, "allele_designation": null, "allele_similarity_cluster_designation": null, "allele_similarity_cluster_member_id": null, "gene_start": 1, "gene_end": 302, "utr_5_prime_start": null, "utr_5_prime_end": null, "leader_1_start": null, "leader_1_end": null, "leader_2_start": null, "leader_2_end": null, "v_rs_start": null, "v_rs_end": null, "v_gene_delineations": [ { "sequence_delineation_id": "1", "delineation_scheme": "IMGT", "unaligned_sequence": "GATGTTGTGATGACTCAGACCCCACTCACTTTGTCGGTTACCATTGGACAACCAGCCTCCATCTCTTGCAAATCAAGTCAGAGCCTCTTACATAGTAATGGAAAGACATATTTGAATTGGTTATTACAGAGGCCAGGCCAGTCTCCAAAGCTCCTAATCTATCTGGTGTCTAAACTGGAATCTGGAGTCCCTGACAGGTTCAGTGGCAGTGGATCAGGGACAGATTTCACACTGAAAATCAGCAGAGTGGAGGCTGAGGATTTGGGAGTTTATTACTGCTTGCAAGCTACACATTTTCCTCA", "aligned_sequence": "GATGTTGTGATGACTCAGACCCCACTCACTTTGTCGGTTACCATTGGACAACCAGCCTCCATCTCTTGCAAATCAAGTCAGAGCCTCTTACATAGT...AATGGAAAGACATATTTGAATTGGTTATTACAGAGGCCAGGCCAGTCTCCAAAGCTCCTAATCTATCTGGTG.....................TCTAAACTGGAATCTGGAGTCCCT...GACAGGTTCAGTGGCAGTGGA......TCAGGGACAGATTTCACACTGAAAATCAGCAGAGTGGAGGCTGAGGATTTGGGAGTTTATTACTGCTTGCAAGCTACACATTTTCCTCA", "fwr1_start": 1, "fwr1_end": 78, "cdr1_start": 79, "cdr1_end": 111, "fwr2_start": 112, "fwr2_end": 162, "cdr2_start": 163, "cdr2_end": 171, "fwr3_start": 172, "fwr3_end": 279, "cdr3_start": 280, "alignment_labels": [ "1", "2", "3", "4", "5", "6", "7", "8", "9", "10", "11", "12", "13", "14", "15", "16", "17", "18", "19", "20", "21", "22", "23", "24", "25", "26", "27", "28", "29", "30", "31", "32", "33", "34", "35", "36", "37", "38", "39", "40", "41", "42", "43", "44", "45", "46", "47", "48", "49", "50", "51", "52", "53", "54", "55", "56", "57", "58", "59", "60", "61", "62", "63", "64", "65", "66", "67", "68", "69", "70", "71", "72", "73", "74", "75", "76", "77", "78", "79", "80", "81", "82", "83", "84", "85", "86", "87", "88", "89", "90", "91", "92", "93", "94", "95", "96", "97", "98", "99", "100", "101", "102", "103", "104" ] } ], "unrearranged_support": [], "rearranged_support": [], "paralogs": null, "curation": null, "curational_tags": null }, { "allele_description_id": "OGRDB:A01687", "allele_description_ref": "OGRDB:Mus musculus/NOD/ShiLtJ_IGK:IGKV-L6SK.1", "maintainer": "William Lees", "acknowledgements": null, "lab_address": "Birkbeck College, University of London, Malet Street, London", "release_version": 1, "release_date": "03-May-2022", "release_description": "https://www.amazon.co.uk/Metre-Metal-Blocked-Unblocker-Cleaner/dp/B00UNGS08K/ref=sr_1_18?keywords=drain+unblocker&qid=1651577716&sprefix=drain%2Caps%2C68&sr=8-18", "label": "IGKV0-L6SK*00", "sequence": "CAAATTGTTCTCACCCAGTCTCCAGCAATCATGTCTGCATCTCTAGGGGAGGAGATCACCCTAACCTGCAGTGCCAGCTCGAGTGTAAGTTACATGCACTGGTTCCAGCAGAAGTCAGGCACTTCTCCCAAACTCTTGATTTATAGCACATCCAACCTGGCTTCTGGAGTCCCTTCTCGCTTCAGTGGCAGTGGGTCTGGGACCTTTTATTCTCTCACAATCAGCAGTGTGGAGGCTGAAGATGCTGCCGATTATTACTGCCATCAGTGGAGTAGTTATCC", "coding_sequence": "CAAATTGTTCTCACCCAGTCTCCAGCAATCATGTCTGCATCTCTAGGGGAGGAGATCACCCTAACCTGCAGTGCCAGCTCGAGTGTAAGTTACATGCACTGGTTCCAGCAGAAGTCAGGCACTTCTCCCAAACTCTTGATTTATAGCACATCCAACCTGGCTTCTGGAGTCCCTTCTCGCTTCAGTGGCAGTGGGTCTGGGACCTTTTATTCTCTCACAATCAGCAGTGTGGAGGCTGAAGATGCTGCCGATTATTACTGCCATCAGTGGAGTAGTTATCC", "ext_3prime": null, "aliases": [ "Kos et al: IGKV4-80*01_S5342_NOD" ], "locus": "IGK", "chromosome": null, "sequence_type": "V", "functional": true, "inference_type": "Rearranged only", "species": { "id": "NCBITAXON:10090", "label": "Mus musculus" }, "species_subgroup": "NOD/ShiLtJ", "species_subgroup_type": "strain", "status": null, "gene_designation": null, "subgroup_designation": null, "allele_designation": null, "allele_similarity_cluster_designation": null, "allele_similarity_cluster_member_id": null, "gene_start": 1, "gene_end": 281, "utr_5_prime_start": null, "utr_5_prime_end": null, "leader_1_start": null, "leader_1_end": null, "leader_2_start": null, "leader_2_end": null, "v_rs_start": null, "v_rs_end": null, "v_gene_delineations": [ { "sequence_delineation_id": "1", "delineation_scheme": "IMGT", "unaligned_sequence": "CAAATTGTTCTCACCCAGTCTCCAGCAATCATGTCTGCATCTCTAGGGGAGGAGATCACCCTAACCTGCAGTGCCAGCTCGAGTGTAAGTTACATGCACTGGTTCCAGCAGAAGTCAGGCACTTCTCCCAAACTCTTGATTTATAGCACATCCAACCTGGCTTCTGGAGTCCCTTCTCGCTTCAGTGGCAGTGGGTCTGGGACCTTTTATTCTCTCACAATCAGCAGTGTGGAGGCTGAAGATGCTGCCGATTATTACTGCCATCAGTGGAGTAGTTATCC", "aligned_sequence": "CAAATTGTTCTCACCCAGTCTCCAGCAATCATGTCTGCATCTCTAGGGGAGGAGATCACCCTAACCTGCAGTGCCAGCTCGAGTGTA.....................AGTTACATGCACTGGTTCCAGCAGAAGTCAGGCACTTCTCCCAAACTCTTGATTTATAGCACA.....................TCCAACCTGGCTTCTGGAGTCCCT...TCTCGCTTCAGTGGCAGTGGG......TCTGGGACCTTTTATTCTCTCACAATCAGCAGTGTGGAGGCTGAAGATGCTGCCGATTATTACTGCCATCAGTGGAGTAGTTATCC", "fwr1_start": 1, "fwr1_end": 78, "cdr1_start": 79, "cdr1_end": 93, "fwr2_start": 94, "fwr2_end": 144, "cdr2_start": 145, "cdr2_end": 153, "fwr3_start": 154, "fwr3_end": 261, "cdr3_start": 262, "alignment_labels": [ "1", "2", "3", "4", "5", "6", "7", "8", "9", "10", "11", "12", "13", "14", "15", "16", "17", "18", "19", "20", "21", "22", "23", "24", "25", "26", "27", "28", "29", "30", "31", "32", "33", "34", "35", "36", "37", "38", "39", "40", "41", "42", "43", "44", "45", "46", "47", "48", "49", "50", "51", "52", "53", "54", "55", "56", "57", "58", "59", "60", "61", "62", "63", "64", "65", "66", "67", "68", "69", "70", "71", "72", "73", "74", "75", "76", "77", "78", "79", "80", "81", "82", "83", "84", "85", "86", "87", "88", "89", "90", "91", "92", "93", "94", "95", "96", "97", "98", "99", "100", "101", "102", "103", "104" ] } ], "unrearranged_support": [], "rearranged_support": [], "paralogs": null, "curation": null, "curational_tags": null }, { "allele_description_id": "OGRDB:A01708", "allele_description_ref": "OGRDB:Mus musculus/NOD/ShiLtJ_IGK:IGKV-LXIA.1", "maintainer": "William Lees", "acknowledgements": null, "lab_address": "Birkbeck College, University of London, Malet Street, London", "release_version": 1, "release_date": "03-May-2022", "release_description": "https://www.amazon.co.uk/Metre-Metal-Blocked-Unblocker-Cleaner/dp/B00UNGS08K/ref=sr_1_18?keywords=drain+unblocker&qid=1651577716&sprefix=drain%2Caps%2C68&sr=8-18", "label": "IGKV0-LXIA*00", "sequence": "CAAATTGTTCTCACCCAGTCTCCAGCAATCATGTCTGCCTCTCCAGGGGAGAAGGTCACCATGACCTGCAGTGCCAGCTCAAGTGTAAGTTCCAGGTACTTGCACTGGTACCAGCAGAAGTCAGGAGCCTCCCCCAAACTCTGGATTTATGGCACATCCAACCTGGCTTCTGGAGTCCCTGCTCGCTTCAGTGGCAGTGGGTCTGGGACCTCTTACTCTCTCACAATCAGCAGCGTGGAGGCTGAAGATGCTGCCACTTATTACTGCCAGCAGTATCATAGTGACCCACCCA", "coding_sequence": "CAAATTGTTCTCACCCAGTCTCCAGCAATCATGTCTGCCTCTCCAGGGGAGAAGGTCACCATGACCTGCAGTGCCAGCTCAAGTGTAAGTTCCAGGTACTTGCACTGGTACCAGCAGAAGTCAGGAGCCTCCCCCAAACTCTGGATTTATGGCACATCCAACCTGGCTTCTGGAGTCCCTGCTCGCTTCAGTGGCAGTGGGTCTGGGACCTCTTACTCTCTCACAATCAGCAGCGTGGAGGCTGAAGATGCTGCCACTTATTACTGCCAGCAGTATCATAGTGACCCACCCA", "ext_3prime": null, "aliases": [ "Kos et al: IGKV4-74*01_S3912_NOD" ], "locus": "IGK", "chromosome": null, "sequence_type": "V", "functional": true, "inference_type": "Rearranged only", "species": { "id": "NCBITAXON:10090", "label": "Mus musculus" }, "species_subgroup": "NOD/ShiLtJ", "species_subgroup_type": "strain", "status": null, "gene_designation": null, "subgroup_designation": null, "allele_designation": null, "allele_similarity_cluster_designation": null, "allele_similarity_cluster_member_id": null, "gene_start": 1, "gene_end": 292, "utr_5_prime_start": null, "utr_5_prime_end": null, "leader_1_start": null, "leader_1_end": null, "leader_2_start": null, "leader_2_end": null, "v_rs_start": null, "v_rs_end": null, "v_gene_delineations": [ { "sequence_delineation_id": "1", "delineation_scheme": "IMGT", "unaligned_sequence": "CAAATTGTTCTCACCCAGTCTCCAGCAATCATGTCTGCCTCTCCAGGGGAGAAGGTCACCATGACCTGCAGTGCCAGCTCAAGTGTAAGTTCCAGGTACTTGCACTGGTACCAGCAGAAGTCAGGAGCCTCCCCCAAACTCTGGATTTATGGCACATCCAACCTGGCTTCTGGAGTCCCTGCTCGCTTCAGTGGCAGTGGGTCTGGGACCTCTTACTCTCTCACAATCAGCAGCGTGGAGGCTGAAGATGCTGCCACTTATTACTGCCAGCAGTATCATAGTGACCCACCCA", "aligned_sequence": "CAAATTGTTCTCACCCAGTCTCCAGCAATCATGTCTGCCTCTCCAGGGGAGAAGGTCACCATGACCTGCAGTGCCAGCTCAAGTGTAAGT...............TCCAGGTACTTGCACTGGTACCAGCAGAAGTCAGGAGCCTCCCCCAAACTCTGGATTTATGGCACA.....................TCCAACCTGGCTTCTGGAGTCCCT...GCTCGCTTCAGTGGCAGTGGG......TCTGGGACCTCTTACTCTCTCACAATCAGCAGCGTGGAGGCTGAAGATGCTGCCACTTATTACTGCCAGCAGTATCATAGTGACCCACCCA", "fwr1_start": 1, "fwr1_end": 78, "cdr1_start": 79, "cdr1_end": 99, "fwr2_start": 100, "fwr2_end": 150, "cdr2_start": 151, "cdr2_end": 159, "fwr3_start": 160, "fwr3_end": 267, "cdr3_start": 268, "alignment_labels": [ "1", "2", "3", "4", "5", "6", "7", "8", "9", "10", "11", "12", "13", "14", "15", "16", "17", "18", "19", "20", "21", "22", "23", "24", "25", "26", "27", "28", "29", "30", "31", "32", "33", "34", "35", "36", "37", "38", "39", "40", "41", "42", "43", "44", "45", "46", "47", "48", "49", "50", "51", "52", "53", "54", "55", "56", "57", "58", "59", "60", "61", "62", "63", "64", "65", "66", "67", "68", "69", "70", "71", "72", "73", "74", "75", "76", "77", "78", "79", "80", "81", "82", "83", "84", "85", "86", "87", "88", "89", "90", "91", "92", "93", "94", "95", "96", "97", "98", "99", "100", "101", "102", "103", "104" ] } ], "unrearranged_support": [], "rearranged_support": [], "paralogs": null, "curation": null, "curational_tags": null }, { "allele_description_id": "OGRDB:A01720", "allele_description_ref": "OGRDB:Mus musculus/NOD/ShiLtJ_IGK:IGKV-M2MH.1", "maintainer": "William Lees", "acknowledgements": null, "lab_address": "Birkbeck College, University of London, Malet Street, London", "release_version": 1, "release_date": "03-May-2022", "release_description": "https://www.amazon.co.uk/Metre-Metal-Blocked-Unblocker-Cleaner/dp/B00UNGS08K/ref=sr_1_18?keywords=drain+unblocker&qid=1651577716&sprefix=drain%2Caps%2C68&sr=8-18", "label": "IGKV0-M2MH*00", "sequence": "GATGTTGTTCTGACCCAAACTCCACTCTCTCTGCCTGTCAATATTGGAGATCAAGCCTCTATCTCTTGCAAGTCTACTAAGAGCCTTCTGAATAGTGATGGATTCACTTATTTGGGCTGGTACCTGCAGAAGCCAGGCCAGTCTCCACAGCTCCTAATATATTTGGTTTCTAATCGATTTTCTGGAGTTCCAGACAGGTTCAGTGGTAGTGGGTCAGGGACAGATTTCACCCTCAAGATCAGCAGAGTGGAGGCTGAGGATTTGGGAGTTTATTATTGCTTCCAGAGTAACTATCTTCCTCT", "coding_sequence": "GATGTTGTTCTGACCCAAACTCCACTCTCTCTGCCTGTCAATATTGGAGATCAAGCCTCTATCTCTTGCAAGTCTACTAAGAGCCTTCTGAATAGTGATGGATTCACTTATTTGGGCTGGTACCTGCAGAAGCCAGGCCAGTCTCCACAGCTCCTAATATATTTGGTTTCTAATCGATTTTCTGGAGTTCCAGACAGGTTCAGTGGTAGTGGGTCAGGGACAGATTTCACCCTCAAGATCAGCAGAGTGGAGGCTGAGGATTTGGGAGTTTATTATTGCTTCCAGAGTAACTATCTTCCTCT", "ext_3prime": null, "aliases": [ "Kos et al: IGKV1-99*01_S3206_NOD" ], "locus": "IGK", "chromosome": null, "sequence_type": "V", "functional": true, "inference_type": "Rearranged only", "species": { "id": "NCBITAXON:10090", "label": "Mus musculus" }, "species_subgroup": "NOD/ShiLtJ", "species_subgroup_type": "strain", "status": null, "gene_designation": null, "subgroup_designation": null, "allele_designation": null, "allele_similarity_cluster_designation": null, "allele_similarity_cluster_member_id": null, "gene_start": 1, "gene_end": 302, "utr_5_prime_start": null, "utr_5_prime_end": null, "leader_1_start": null, "leader_1_end": null, "leader_2_start": null, "leader_2_end": null, "v_rs_start": null, "v_rs_end": null, "v_gene_delineations": [ { "sequence_delineation_id": "1", "delineation_scheme": "IMGT", "unaligned_sequence": "GATGTTGTTCTGACCCAAACTCCACTCTCTCTGCCTGTCAATATTGGAGATCAAGCCTCTATCTCTTGCAAGTCTACTAAGAGCCTTCTGAATAGTGATGGATTCACTTATTTGGGCTGGTACCTGCAGAAGCCAGGCCAGTCTCCACAGCTCCTAATATATTTGGTTTCTAATCGATTTTCTGGAGTTCCAGACAGGTTCAGTGGTAGTGGGTCAGGGACAGATTTCACCCTCAAGATCAGCAGAGTGGAGGCTGAGGATTTGGGAGTTTATTATTGCTTCCAGAGTAACTATCTTCCTCT", "aligned_sequence": "GATGTTGTTCTGACCCAAACTCCACTCTCTCTGCCTGTCAATATTGGAGATCAAGCCTCTATCTCTTGCAAGTCTACTAAGAGCCTTCTGAATAGT...GATGGATTCACTTATTTGGGCTGGTACCTGCAGAAGCCAGGCCAGTCTCCACAGCTCCTAATATATTTGGTT.....................TCTAATCGATTTTCTGGAGTTCCA...GACAGGTTCAGTGGTAGTGGG......TCAGGGACAGATTTCACCCTCAAGATCAGCAGAGTGGAGGCTGAGGATTTGGGAGTTTATTATTGCTTCCAGAGTAACTATCTTCCTCT", "fwr1_start": 1, "fwr1_end": 78, "cdr1_start": 79, "cdr1_end": 111, "fwr2_start": 112, "fwr2_end": 162, "cdr2_start": 163, "cdr2_end": 171, "fwr3_start": 172, "fwr3_end": 279, "cdr3_start": 280, "alignment_labels": [ "1", "2", "3", "4", "5", "6", "7", "8", "9", "10", "11", "12", "13", "14", "15", "16", "17", "18", "19", "20", "21", "22", "23", "24", "25", "26", "27", "28", "29", "30", "31", "32", "33", "34", "35", "36", "37", "38", "39", "40", "41", "42", "43", "44", "45", "46", "47", "48", "49", "50", "51", "52", "53", "54", "55", "56", "57", "58", "59", "60", "61", "62", "63", "64", "65", "66", "67", "68", "69", "70", "71", "72", "73", "74", "75", "76", "77", "78", "79", "80", "81", "82", "83", "84", "85", "86", "87", "88", "89", "90", "91", "92", "93", "94", "95", "96", "97", "98", "99", "100", "101", "102", "103", "104" ] } ], "unrearranged_support": [], "rearranged_support": [], "paralogs": null, "curation": null, "curational_tags": null }, { "allele_description_id": "OGRDB:A01724", "allele_description_ref": "OGRDB:Mus musculus/NOD/ShiLtJ_IGK:IGKV-P46Y.1", "maintainer": "William Lees", "acknowledgements": null, "lab_address": "Birkbeck College, University of London, Malet Street, London", "release_version": 1, "release_date": "03-May-2022", "release_description": "https://www.amazon.co.uk/Metre-Metal-Blocked-Unblocker-Cleaner/dp/B00UNGS08K/ref=sr_1_18?keywords=drain+unblocker&qid=1651577716&sprefix=drain%2Caps%2C68&sr=8-18", "label": "IGKV0-P46Y*00", "sequence": "CAGATTGTTCTCACCCAGTCTCCAGCAATCATGTCTGCATCTCCAGGGGAGAAGGTCACCATGACCTGCAGGGCCAGCTCAAGTGTAAGTTCCAGTTACTTGCACTGGTACCAGCAGAAGCCAGGATCTTCCCCCAAACTCTGGATTTATAGCACATCCAACCTGGCTTCAGGAGTCCCAGCTCGCTTCAGTGGCAGTGGGTCTGGGACCTCTTACTCTCTCACAATCAGCAGTGTGGAGGCTGAGGATGCTGCCACTTATTACTGCCAGCAGTATGATAGTTCCCCACCCA", "coding_sequence": "CAGATTGTTCTCACCCAGTCTCCAGCAATCATGTCTGCATCTCCAGGGGAGAAGGTCACCATGACCTGCAGGGCCAGCTCAAGTGTAAGTTCCAGTTACTTGCACTGGTACCAGCAGAAGCCAGGATCTTCCCCCAAACTCTGGATTTATAGCACATCCAACCTGGCTTCAGGAGTCCCAGCTCGCTTCAGTGGCAGTGGGTCTGGGACCTCTTACTCTCTCACAATCAGCAGTGTGGAGGCTGAGGATGCTGCCACTTATTACTGCCAGCAGTATGATAGTTCCCCACCCA", "ext_3prime": null, "aliases": [ "Kos et al: IGKV4-74*01_S3301_NOD" ], "locus": "IGK", "chromosome": null, "sequence_type": "V", "functional": true, "inference_type": "Rearranged only", "species": { "id": "NCBITAXON:10090", "label": "Mus musculus" }, "species_subgroup": "NOD/ShiLtJ", "species_subgroup_type": "strain", "status": null, "gene_designation": null, "subgroup_designation": null, "allele_designation": null, "allele_similarity_cluster_designation": null, "allele_similarity_cluster_member_id": null, "gene_start": 1, "gene_end": 292, "utr_5_prime_start": null, "utr_5_prime_end": null, "leader_1_start": null, "leader_1_end": null, "leader_2_start": null, "leader_2_end": null, "v_rs_start": null, "v_rs_end": null, "v_gene_delineations": [ { "sequence_delineation_id": "1", "delineation_scheme": "IMGT", "unaligned_sequence": "CAGATTGTTCTCACCCAGTCTCCAGCAATCATGTCTGCATCTCCAGGGGAGAAGGTCACCATGACCTGCAGGGCCAGCTCAAGTGTAAGTTCCAGTTACTTGCACTGGTACCAGCAGAAGCCAGGATCTTCCCCCAAACTCTGGATTTATAGCACATCCAACCTGGCTTCAGGAGTCCCAGCTCGCTTCAGTGGCAGTGGGTCTGGGACCTCTTACTCTCTCACAATCAGCAGTGTGGAGGCTGAGGATGCTGCCACTTATTACTGCCAGCAGTATGATAGTTCCCCACCCA", "aligned_sequence": "CAGATTGTTCTCACCCAGTCTCCAGCAATCATGTCTGCATCTCCAGGGGAGAAGGTCACCATGACCTGCAGGGCCAGCTCAAGTGTAAGT...............TCCAGTTACTTGCACTGGTACCAGCAGAAGCCAGGATCTTCCCCCAAACTCTGGATTTATAGCACA.....................TCCAACCTGGCTTCAGGAGTCCCA...GCTCGCTTCAGTGGCAGTGGG......TCTGGGACCTCTTACTCTCTCACAATCAGCAGTGTGGAGGCTGAGGATGCTGCCACTTATTACTGCCAGCAGTATGATAGTTCCCCACCCA", "fwr1_start": 1, "fwr1_end": 78, "cdr1_start": 79, "cdr1_end": 99, "fwr2_start": 100, "fwr2_end": 150, "cdr2_start": 151, "cdr2_end": 159, "fwr3_start": 160, "fwr3_end": 267, "cdr3_start": 268, "alignment_labels": [ "1", "2", "3", "4", "5", "6", "7", "8", "9", "10", "11", "12", "13", "14", "15", "16", "17", "18", "19", "20", "21", "22", "23", "24", "25", "26", "27", "28", "29", "30", "31", "32", "33", "34", "35", "36", "37", "38", "39", "40", "41", "42", "43", "44", "45", "46", "47", "48", "49", "50", "51", "52", "53", "54", "55", "56", "57", "58", "59", "60", "61", "62", "63", "64", "65", "66", "67", "68", "69", "70", "71", "72", "73", "74", "75", "76", "77", "78", "79", "80", "81", "82", "83", "84", "85", "86", "87", "88", "89", "90", "91", "92", "93", "94", "95", "96", "97", "98", "99", "100", "101", "102", "103", "104" ] } ], "unrearranged_support": [], "rearranged_support": [], "paralogs": null, "curation": null, "curational_tags": null }, { "allele_description_id": "OGRDB:A01698", "allele_description_ref": "OGRDB:Mus musculus/NOD/ShiLtJ_IGK:IGKV-PIPH.1", "maintainer": "William Lees", "acknowledgements": null, "lab_address": "Birkbeck College, University of London, Malet Street, London", "release_version": 1, "release_date": "03-May-2022", "release_description": "https://www.amazon.co.uk/Metre-Metal-Blocked-Unblocker-Cleaner/dp/B00UNGS08K/ref=sr_1_18?keywords=drain+unblocker&qid=1651577716&sprefix=drain%2Caps%2C68&sr=8-18", "label": "IGKV0-PIPH*00", "sequence": "GATATTGTGATGACGCAGGCTGCATTCTCCAATCCAGTCACTCTTGGAACATCAGCTTCCATCTCTTGCAGTTCTAGTAAGAGTCTCCTACATAGTAATGGCATCACTTATTTGTATTGGTATCTGCAGAGGCCAGGCCAGTCTCCTCAGCTCCTGATATATCGGATGTCCAACCTTGCCTCAGGAGTCCCAGACAGGTTCAGTGGCAGTGGGTCAGGAACTGATTTCACACTGAGAATCAGCAGAGTGGAGGCTGAGGATGTGGGTGTTTATTACTGTGCTCAAATGCTAGAACGCCCTCC", "coding_sequence": "GATATTGTGATGACGCAGGCTGCATTCTCCAATCCAGTCACTCTTGGAACATCAGCTTCCATCTCTTGCAGTTCTAGTAAGAGTCTCCTACATAGTAATGGCATCACTTATTTGTATTGGTATCTGCAGAGGCCAGGCCAGTCTCCTCAGCTCCTGATATATCGGATGTCCAACCTTGCCTCAGGAGTCCCAGACAGGTTCAGTGGCAGTGGGTCAGGAACTGATTTCACACTGAGAATCAGCAGAGTGGAGGCTGAGGATGTGGGTGTTTATTACTGTGCTCAAATGCTAGAACGCCCTCC", "ext_3prime": null, "aliases": [ "Kos et al: IGKV2-109*03_NOD" ], "locus": "IGK", "chromosome": null, "sequence_type": "V", "functional": true, "inference_type": "Rearranged only", "species": { "id": "NCBITAXON:10090", "label": "Mus musculus" }, "species_subgroup": "NOD/ShiLtJ", "species_subgroup_type": "strain", "status": null, "gene_designation": null, "subgroup_designation": null, "allele_designation": null, "allele_similarity_cluster_designation": null, "allele_similarity_cluster_member_id": null, "gene_start": 1, "gene_end": 302, "utr_5_prime_start": null, "utr_5_prime_end": null, "leader_1_start": null, "leader_1_end": null, "leader_2_start": null, "leader_2_end": null, "v_rs_start": null, "v_rs_end": null, "v_gene_delineations": [ { "sequence_delineation_id": "1", "delineation_scheme": "IMGT", "unaligned_sequence": "GATATTGTGATGACGCAGGCTGCATTCTCCAATCCAGTCACTCTTGGAACATCAGCTTCCATCTCTTGCAGTTCTAGTAAGAGTCTCCTACATAGTAATGGCATCACTTATTTGTATTGGTATCTGCAGAGGCCAGGCCAGTCTCCTCAGCTCCTGATATATCGGATGTCCAACCTTGCCTCAGGAGTCCCAGACAGGTTCAGTGGCAGTGGGTCAGGAACTGATTTCACACTGAGAATCAGCAGAGTGGAGGCTGAGGATGTGGGTGTTTATTACTGTGCTCAAATGCTAGAACGCCCTCC", "aligned_sequence": "GATATTGTGATGACGCAGGCTGCATTCTCCAATCCAGTCACTCTTGGAACATCAGCTTCCATCTCTTGCAGTTCTAGTAAGAGTCTCCTACATAGT...AATGGCATCACTTATTTGTATTGGTATCTGCAGAGGCCAGGCCAGTCTCCTCAGCTCCTGATATATCGGATG.....................TCCAACCTTGCCTCAGGAGTCCCA...GACAGGTTCAGTGGCAGTGGG......TCAGGAACTGATTTCACACTGAGAATCAGCAGAGTGGAGGCTGAGGATGTGGGTGTTTATTACTGTGCTCAAATGCTAGAACGCCCTCC", "fwr1_start": 1, "fwr1_end": 78, "cdr1_start": 79, "cdr1_end": 111, "fwr2_start": 112, "fwr2_end": 162, "cdr2_start": 163, "cdr2_end": 171, "fwr3_start": 172, "fwr3_end": 279, "cdr3_start": 280, "alignment_labels": [ "1", "2", "3", "4", "5", "6", "7", "8", "9", "10", "11", "12", "13", "14", "15", "16", "17", "18", "19", "20", "21", "22", "23", "24", "25", "26", "27", "28", "29", "30", "31", "32", "33", "34", "35", "36", "37", "38", "39", "40", "41", "42", "43", "44", "45", "46", "47", "48", "49", "50", "51", "52", "53", "54", "55", "56", "57", "58", "59", "60", "61", "62", "63", "64", "65", "66", "67", "68", "69", "70", "71", "72", "73", "74", "75", "76", "77", "78", "79", "80", "81", "82", "83", "84", "85", "86", "87", "88", "89", "90", "91", "92", "93", "94", "95", "96", "97", "98", "99", "100", "101", "102", "103", "104" ] } ], "unrearranged_support": [], "rearranged_support": [], "paralogs": null, "curation": null, "curational_tags": null }, { "allele_description_id": "OGRDB:A01701", "allele_description_ref": "OGRDB:Mus musculus/NOD/ShiLtJ_IGK:IGKV-PK2K.1", "maintainer": "William Lees", "acknowledgements": null, "lab_address": "Birkbeck College, University of London, Malet Street, London", "release_version": 1, "release_date": "03-May-2022", "release_description": "https://www.amazon.co.uk/Metre-Metal-Blocked-Unblocker-Cleaner/dp/B00UNGS08K/ref=sr_1_18?keywords=drain+unblocker&qid=1651577716&sprefix=drain%2Caps%2C68&sr=8-18", "label": "IGKV0-PK2K*00", "sequence": "GAAATTGTGCTCACCCAGTCTCCAGCACTCATGGCTGCATCTCCAGGGGAGAAGGTCACCATCACCTGCAGTGTCAGCTCAAGTATAAGTTCCAGCAACTTACACTGGTACCAGCAGAAGTCAGGAACCTCCCCCAAACCCTGGATTTATGGCACATCCAACCTTGCTTCTGGAGTCCCTGTTCGCTTCAGTGGCAGTGGATCTGGGACCTCTTATTCTCTCACAATCAGCAGCATGGAGGCTGAAGATGCTGCCACTTATTACTGTCAACAGTGGAGTAGTTACCCACTCA", "coding_sequence": "GAAATTGTGCTCACCCAGTCTCCAGCACTCATGGCTGCATCTCCAGGGGAGAAGGTCACCATCACCTGCAGTGTCAGCTCAAGTATAAGTTCCAGCAACTTACACTGGTACCAGCAGAAGTCAGGAACCTCCCCCAAACCCTGGATTTATGGCACATCCAACCTTGCTTCTGGAGTCCCTGTTCGCTTCAGTGGCAGTGGATCTGGGACCTCTTATTCTCTCACAATCAGCAGCATGGAGGCTGAAGATGCTGCCACTTATTACTGTCAACAGTGGAGTAGTTACCCACTCA", "ext_3prime": null, "aliases": [ "Kos et al: IGKV4-53*01_S3575_NOD" ], "locus": "IGK", "chromosome": null, "sequence_type": "V", "functional": true, "inference_type": "Rearranged only", "species": { "id": "NCBITAXON:10090", "label": "Mus musculus" }, "species_subgroup": "NOD/ShiLtJ", "species_subgroup_type": "strain", "status": null, "gene_designation": null, "subgroup_designation": null, "allele_designation": null, "allele_similarity_cluster_designation": null, "allele_similarity_cluster_member_id": null, "gene_start": 1, "gene_end": 292, "utr_5_prime_start": null, "utr_5_prime_end": null, "leader_1_start": null, "leader_1_end": null, "leader_2_start": null, "leader_2_end": null, "v_rs_start": null, "v_rs_end": null, "v_gene_delineations": [ { "sequence_delineation_id": "1", "delineation_scheme": "IMGT", "unaligned_sequence": "GAAATTGTGCTCACCCAGTCTCCAGCACTCATGGCTGCATCTCCAGGGGAGAAGGTCACCATCACCTGCAGTGTCAGCTCAAGTATAAGTTCCAGCAACTTACACTGGTACCAGCAGAAGTCAGGAACCTCCCCCAAACCCTGGATTTATGGCACATCCAACCTTGCTTCTGGAGTCCCTGTTCGCTTCAGTGGCAGTGGATCTGGGACCTCTTATTCTCTCACAATCAGCAGCATGGAGGCTGAAGATGCTGCCACTTATTACTGTCAACAGTGGAGTAGTTACCCACTCA", "aligned_sequence": "GAAATTGTGCTCACCCAGTCTCCAGCACTCATGGCTGCATCTCCAGGGGAGAAGGTCACCATCACCTGCAGTGTCAGCTCAAGTATAAGT...............TCCAGCAACTTACACTGGTACCAGCAGAAGTCAGGAACCTCCCCCAAACCCTGGATTTATGGCACA.....................TCCAACCTTGCTTCTGGAGTCCCT...GTTCGCTTCAGTGGCAGTGGA......TCTGGGACCTCTTATTCTCTCACAATCAGCAGCATGGAGGCTGAAGATGCTGCCACTTATTACTGTCAACAGTGGAGTAGTTACCCACTCA", "fwr1_start": 1, "fwr1_end": 78, "cdr1_start": 79, "cdr1_end": 99, "fwr2_start": 100, "fwr2_end": 150, "cdr2_start": 151, "cdr2_end": 159, "fwr3_start": 160, "fwr3_end": 267, "cdr3_start": 268, "alignment_labels": [ "1", "2", "3", "4", "5", "6", "7", "8", "9", "10", "11", "12", "13", "14", "15", "16", "17", "18", "19", "20", "21", "22", "23", "24", "25", "26", "27", "28", "29", "30", "31", "32", "33", "34", "35", "36", "37", "38", "39", "40", "41", "42", "43", "44", "45", "46", "47", "48", "49", "50", "51", "52", "53", "54", "55", "56", "57", "58", "59", "60", "61", "62", "63", "64", "65", "66", "67", "68", "69", "70", "71", "72", "73", "74", "75", "76", "77", "78", "79", "80", "81", "82", "83", "84", "85", "86", "87", "88", "89", "90", "91", "92", "93", "94", "95", "96", "97", "98", "99", "100", "101", "102", "103", "104" ] } ], "unrearranged_support": [], "rearranged_support": [], "paralogs": null, "curation": null, "curational_tags": null }, { "allele_description_id": "OGRDB:A01705", "allele_description_ref": "OGRDB:Mus musculus/NOD/ShiLtJ_IGK:IGKV-PVR6.1", "maintainer": "William Lees", "acknowledgements": null, "lab_address": "Birkbeck College, University of London, Malet Street, London", "release_version": 1, "release_date": "03-May-2022", "release_description": "https://www.amazon.co.uk/Metre-Metal-Blocked-Unblocker-Cleaner/dp/B00UNGS08K/ref=sr_1_18?keywords=drain+unblocker&qid=1651577716&sprefix=drain%2Caps%2C68&sr=8-18", "label": "IGKV0-PVR6*00", "sequence": "GATGTTGTGATGACCCAGACTCCACTCACTTTGTCTGTTACCATTGGACAGCCAGCTTCCATTTCTTGCAAGTCAAGTCAGAGCCTCTTATATAGTGATGGAAAAACCTATTTGAATTGGTTATTACAGAGTCCAGGCCAGTCTCCAAAGCTCCTAATCTATCTGGTGTCTAAACTGGAATCTGGAGTCCCTGACAGATTCAGTGGCAGTGGATCAGGGACAGATTTTACACTGAAAATCAGCAGAGTGGAGGCTGAGGATTTGGGAGTTTATTACTGCGTGCAAGGTACACATTTCCCTCA", "coding_sequence": "GATGTTGTGATGACCCAGACTCCACTCACTTTGTCTGTTACCATTGGACAGCCAGCTTCCATTTCTTGCAAGTCAAGTCAGAGCCTCTTATATAGTGATGGAAAAACCTATTTGAATTGGTTATTACAGAGTCCAGGCCAGTCTCCAAAGCTCCTAATCTATCTGGTGTCTAAACTGGAATCTGGAGTCCCTGACAGATTCAGTGGCAGTGGATCAGGGACAGATTTTACACTGAAAATCAGCAGAGTGGAGGCTGAGGATTTGGGAGTTTATTACTGCGTGCAAGGTACACATTTCCCTCA", "ext_3prime": null, "aliases": [ "Kos et al: IGKV1-133*01_S3070_NOD" ], "locus": "IGK", "chromosome": null, "sequence_type": "V", "functional": true, "inference_type": "Rearranged only", "species": { "id": "NCBITAXON:10090", "label": "Mus musculus" }, "species_subgroup": "NOD/ShiLtJ", "species_subgroup_type": "strain", "status": null, "gene_designation": null, "subgroup_designation": null, "allele_designation": null, "allele_similarity_cluster_designation": null, "allele_similarity_cluster_member_id": null, "gene_start": 1, "gene_end": 302, "utr_5_prime_start": null, "utr_5_prime_end": null, "leader_1_start": null, "leader_1_end": null, "leader_2_start": null, "leader_2_end": null, "v_rs_start": null, "v_rs_end": null, "v_gene_delineations": [ { "sequence_delineation_id": "1", "delineation_scheme": "IMGT", "unaligned_sequence": "GATGTTGTGATGACCCAGACTCCACTCACTTTGTCTGTTACCATTGGACAGCCAGCTTCCATTTCTTGCAAGTCAAGTCAGAGCCTCTTATATAGTGATGGAAAAACCTATTTGAATTGGTTATTACAGAGTCCAGGCCAGTCTCCAAAGCTCCTAATCTATCTGGTGTCTAAACTGGAATCTGGAGTCCCTGACAGATTCAGTGGCAGTGGATCAGGGACAGATTTTACACTGAAAATCAGCAGAGTGGAGGCTGAGGATTTGGGAGTTTATTACTGCGTGCAAGGTACACATTTCCCTCA", "aligned_sequence": "GATGTTGTGATGACCCAGACTCCACTCACTTTGTCTGTTACCATTGGACAGCCAGCTTCCATTTCTTGCAAGTCAAGTCAGAGCCTCTTATATAGT...GATGGAAAAACCTATTTGAATTGGTTATTACAGAGTCCAGGCCAGTCTCCAAAGCTCCTAATCTATCTGGTG.....................TCTAAACTGGAATCTGGAGTCCCT...GACAGATTCAGTGGCAGTGGA......TCAGGGACAGATTTTACACTGAAAATCAGCAGAGTGGAGGCTGAGGATTTGGGAGTTTATTACTGCGTGCAAGGTACACATTTCCCTCA", "fwr1_start": 1, "fwr1_end": 78, "cdr1_start": 79, "cdr1_end": 111, "fwr2_start": 112, "fwr2_end": 162, "cdr2_start": 163, "cdr2_end": 171, "fwr3_start": 172, "fwr3_end": 279, "cdr3_start": 280, "alignment_labels": [ "1", "2", "3", "4", "5", "6", "7", "8", "9", "10", "11", "12", "13", "14", "15", "16", "17", "18", "19", "20", "21", "22", "23", "24", "25", "26", "27", "28", "29", "30", "31", "32", "33", "34", "35", "36", "37", "38", "39", "40", "41", "42", "43", "44", "45", "46", "47", "48", "49", "50", "51", "52", "53", "54", "55", "56", "57", "58", "59", "60", "61", "62", "63", "64", "65", "66", "67", "68", "69", "70", "71", "72", "73", "74", "75", "76", "77", "78", "79", "80", "81", "82", "83", "84", "85", "86", "87", "88", "89", "90", "91", "92", "93", "94", "95", "96", "97", "98", "99", "100", "101", "102", "103", "104" ] } ], "unrearranged_support": [], "rearranged_support": [], "paralogs": null, "curation": null, "curational_tags": null }, { "allele_description_id": "OGRDB:A01683", "allele_description_ref": "OGRDB:Mus musculus/NOD/ShiLtJ_IGK:IGKV-Q6YF.1", "maintainer": "William Lees", "acknowledgements": null, "lab_address": "Birkbeck College, University of London, Malet Street, London", "release_version": 1, "release_date": "03-May-2022", "release_description": "https://www.amazon.co.uk/Metre-Metal-Blocked-Unblocker-Cleaner/dp/B00UNGS08K/ref=sr_1_18?keywords=drain+unblocker&qid=1651577716&sprefix=drain%2Caps%2C68&sr=8-18", "label": "IGKV0-Q6YF*00", "sequence": "GATATCCAGATGACTCAGTCTCCAGCCTCCCTATCTGCATCTGTGGGAGAAACTGTCACCATCACATGTCGAGCAAGTGGGAATATTCACAATTATTTAGCATGGTATCAGCAGAAACAGGGAAAATCTCCTCAGCTCCTGGTCTATAATGCAAAAACCTTAGCGGAAGGTGTGCCATCAAGGTTCAGTGGCAGTGGATCAGGAACACAATATTCTCTCAAGATCAACAGCCTGCAGCCTGAGGATTTTGGGAGTTATTACTGTCATCATTATTATAGTACTCCTCC", "coding_sequence": "GATATCCAGATGACTCAGTCTCCAGCCTCCCTATCTGCATCTGTGGGAGAAACTGTCACCATCACATGTCGAGCAAGTGGGAATATTCACAATTATTTAGCATGGTATCAGCAGAAACAGGGAAAATCTCCTCAGCTCCTGGTCTATAATGCAAAAACCTTAGCGGAAGGTGTGCCATCAAGGTTCAGTGGCAGTGGATCAGGAACACAATATTCTCTCAAGATCAACAGCCTGCAGCCTGAGGATTTTGGGAGTTATTACTGTCATCATTATTATAGTACTCCTCC", "ext_3prime": null, "aliases": [ "Kos et al: IGKV12-41*01_S6800_NOD" ], "locus": "IGK", "chromosome": null, "sequence_type": "V", "functional": true, "inference_type": "Rearranged only", "species": { "id": "NCBITAXON:10090", "label": "Mus musculus" }, "species_subgroup": "NOD/ShiLtJ", "species_subgroup_type": "strain", "status": null, "gene_designation": null, "subgroup_designation": null, "allele_designation": null, "allele_similarity_cluster_designation": null, "allele_similarity_cluster_member_id": null, "gene_start": 1, "gene_end": 287, "utr_5_prime_start": null, "utr_5_prime_end": null, "leader_1_start": null, "leader_1_end": null, "leader_2_start": null, "leader_2_end": null, "v_rs_start": null, "v_rs_end": null, "v_gene_delineations": [ { "sequence_delineation_id": "1", "delineation_scheme": "IMGT", "unaligned_sequence": "GATATCCAGATGACTCAGTCTCCAGCCTCCCTATCTGCATCTGTGGGAGAAACTGTCACCATCACATGTCGAGCAAGTGGGAATATTCACAATTATTTAGCATGGTATCAGCAGAAACAGGGAAAATCTCCTCAGCTCCTGGTCTATAATGCAAAAACCTTAGCGGAAGGTGTGCCATCAAGGTTCAGTGGCAGTGGATCAGGAACACAATATTCTCTCAAGATCAACAGCCTGCAGCCTGAGGATTTTGGGAGTTATTACTGTCATCATTATTATAGTACTCCTCC", "aligned_sequence": "GATATCCAGATGACTCAGTCTCCAGCCTCCCTATCTGCATCTGTGGGAGAAACTGTCACCATCACATGTCGAGCAAGTGGGAATATT..................CACAATTATTTAGCATGGTATCAGCAGAAACAGGGAAAATCTCCTCAGCTCCTGGTCTATAATGCA.....................AAAACCTTAGCGGAAGGTGTGCCA...TCAAGGTTCAGTGGCAGTGGA......TCAGGAACACAATATTCTCTCAAGATCAACAGCCTGCAGCCTGAGGATTTTGGGAGTTATTACTGTCATCATTATTATAGTACTCCTCC", "fwr1_start": 1, "fwr1_end": 78, "cdr1_start": 79, "cdr1_end": 96, "fwr2_start": 97, "fwr2_end": 147, "cdr2_start": 148, "cdr2_end": 156, "fwr3_start": 157, "fwr3_end": 264, "cdr3_start": 265, "alignment_labels": [ "1", "2", "3", "4", "5", "6", "7", "8", "9", "10", "11", "12", "13", "14", "15", "16", "17", "18", "19", "20", "21", "22", "23", "24", "25", "26", "27", "28", "29", "30", "31", "32", "33", "34", "35", "36", "37", "38", "39", "40", "41", "42", "43", "44", "45", "46", "47", "48", "49", "50", "51", "52", "53", "54", "55", "56", "57", "58", "59", "60", "61", "62", "63", "64", "65", "66", "67", "68", "69", "70", "71", "72", "73", "74", "75", "76", "77", "78", "79", "80", "81", "82", "83", "84", "85", "86", "87", "88", "89", "90", "91", "92", "93", "94", "95", "96", "97", "98", "99", "100", "101", "102", "103", "104" ] } ], "unrearranged_support": [], "rearranged_support": [], "paralogs": null, "curation": null, "curational_tags": null }, { "allele_description_id": "OGRDB:A01679", "allele_description_ref": "OGRDB:Mus musculus/NOD/ShiLtJ_IGK:IGKV-QRSE.1", "maintainer": "William Lees", "acknowledgements": null, "lab_address": "Birkbeck College, University of London, Malet Street, London", "release_version": 1, "release_date": "03-May-2022", "release_description": "https://www.amazon.co.uk/Metre-Metal-Blocked-Unblocker-Cleaner/dp/B00UNGS08K/ref=sr_1_18?keywords=drain+unblocker&qid=1651577716&sprefix=drain%2Caps%2C68&sr=8-18", "label": "IGKV0-QRSE*00", "sequence": "GACATTGTGATGACACAGTCTCCATCCTCCCTGACTGTGACAGCAGGAGAGAAGGTCACTATGAGCTGCAAGTCCAGTCAGAGTCTGTTAAACAGTGGAAATCAAAAGAACTACTTGACCTGGTACCAGCAGAAACCAGGGCAGCCTCCTAAACTGTTGATCTACTGGGCATCCACTAGGGAATCTGGGGTCCCTGATCGCTTCACAGGCAGTGGATCTGGAACAGATTTCACTCTCACCATCAGCAGTGTGCAGGCTGAAGACCTGGCAGTTTATTACTGTCAGAATGATTATAGTTATCCTCC", "coding_sequence": "GACATTGTGATGACACAGTCTCCATCCTCCCTGACTGTGACAGCAGGAGAGAAGGTCACTATGAGCTGCAAGTCCAGTCAGAGTCTGTTAAACAGTGGAAATCAAAAGAACTACTTGACCTGGTACCAGCAGAAACCAGGGCAGCCTCCTAAACTGTTGATCTACTGGGCATCCACTAGGGAATCTGGGGTCCCTGATCGCTTCACAGGCAGTGGATCTGGAACAGATTTCACTCTCACCATCAGCAGTGTGCAGGCTGAAGACCTGGCAGTTTATTACTGTCAGAATGATTATAGTTATCCTCC", "ext_3prime": null, "aliases": [ "Kos et al: IGKV8-19*01_NOD" ], "locus": "IGK", "chromosome": null, "sequence_type": "V", "functional": true, "inference_type": "Rearranged only", "species": { "id": "NCBITAXON:10090", "label": "Mus musculus" }, "species_subgroup": "NOD/ShiLtJ", "species_subgroup_type": "strain", "status": null, "gene_designation": null, "subgroup_designation": null, "allele_designation": null, "allele_similarity_cluster_designation": null, "allele_similarity_cluster_member_id": null, "gene_start": 1, "gene_end": 305, "utr_5_prime_start": null, "utr_5_prime_end": null, "leader_1_start": null, "leader_1_end": null, "leader_2_start": null, "leader_2_end": null, "v_rs_start": null, "v_rs_end": null, "v_gene_delineations": [ { "sequence_delineation_id": "1", "delineation_scheme": "IMGT", "unaligned_sequence": "GACATTGTGATGACACAGTCTCCATCCTCCCTGACTGTGACAGCAGGAGAGAAGGTCACTATGAGCTGCAAGTCCAGTCAGAGTCTGTTAAACAGTGGAAATCAAAAGAACTACTTGACCTGGTACCAGCAGAAACCAGGGCAGCCTCCTAAACTGTTGATCTACTGGGCATCCACTAGGGAATCTGGGGTCCCTGATCGCTTCACAGGCAGTGGATCTGGAACAGATTTCACTCTCACCATCAGCAGTGTGCAGGCTGAAGACCTGGCAGTTTATTACTGTCAGAATGATTATAGTTATCCTCC", "aligned_sequence": "GACATTGTGATGACACAGTCTCCATCCTCCCTGACTGTGACAGCAGGAGAGAAGGTCACTATGAGCTGCAAGTCCAGTCAGAGTCTGTTAAACAGTGGAAATCAAAAGAACTACTTGACCTGGTACCAGCAGAAACCAGGGCAGCCTCCTAAACTGTTGATCTACTGGGCA.....................TCCACTAGGGAATCTGGGGTCCCT...GATCGCTTCACAGGCAGTGGA......TCTGGAACAGATTTCACTCTCACCATCAGCAGTGTGCAGGCTGAAGACCTGGCAGTTTATTACTGTCAGAATGATTATAGTTATCCTCC", "fwr1_start": 1, "fwr1_end": 78, "cdr1_start": 79, "cdr1_end": 114, "fwr2_start": 115, "fwr2_end": 165, "cdr2_start": 166, "cdr2_end": 174, "fwr3_start": 175, "fwr3_end": 282, "cdr3_start": 283, "alignment_labels": [ "1", "2", "3", "4", "5", "6", "7", "8", "9", "10", "11", "12", "13", "14", "15", "16", "17", "18", "19", "20", "21", "22", "23", "24", "25", "26", "27", "28", "29", "30", "31", "32", "33", "34", "35", "36", "37", "38", "39", "40", "41", "42", "43", "44", "45", "46", "47", "48", "49", "50", "51", "52", "53", "54", "55", "56", "57", "58", "59", "60", "61", "62", "63", "64", "65", "66", "67", "68", "69", "70", "71", "72", "73", "74", "75", "76", "77", "78", "79", "80", "81", "82", "83", "84", "85", "86", "87", "88", "89", "90", "91", "92", "93", "94", "95", "96", "97", "98", "99", "100", "101", "102", "103", "104" ] } ], "unrearranged_support": [], "rearranged_support": [], "paralogs": null, "curation": null, "curational_tags": null }, { "allele_description_id": "OGRDB:A01685", "allele_description_ref": "OGRDB:Mus musculus/NOD/ShiLtJ_IGK:IGKV-RING.1", "maintainer": "William Lees", "acknowledgements": null, "lab_address": "Birkbeck College, University of London, Malet Street, London", "release_version": 1, "release_date": "03-May-2022", "release_description": "https://www.amazon.co.uk/Metre-Metal-Blocked-Unblocker-Cleaner/dp/B00UNGS08K/ref=sr_1_18?keywords=drain+unblocker&qid=1651577716&sprefix=drain%2Caps%2C68&sr=8-18", "label": "IGKV0-RING*00", "sequence": "GATGTTGTGATGACCCAAACTCCACTCTCCCTGCCTGTCAGTCTTGGAGATCAAGCTTCCATCTCTTGCAGATCTAGTCAGAGCCTTGTACACAGCAATGGAAACACCTATTTATATTGGTACCTGCAGAAGCCAGGCCAGTCTCCAAAGCTCCTGATCTACAGGGTTTCCAACCGATTTTCTGGGGTCCCAGACAGGTTCAGTGGCAGTGGATCAGGGACAGATTTCACACTCAAGATCAGCAGAGTGGAGGCTGAGGATCTGGGAGTTTATTTCTGCTTTCAAGGTACACATGTTCCTCA", "coding_sequence": "GATGTTGTGATGACCCAAACTCCACTCTCCCTGCCTGTCAGTCTTGGAGATCAAGCTTCCATCTCTTGCAGATCTAGTCAGAGCCTTGTACACAGCAATGGAAACACCTATTTATATTGGTACCTGCAGAAGCCAGGCCAGTCTCCAAAGCTCCTGATCTACAGGGTTTCCAACCGATTTTCTGGGGTCCCAGACAGGTTCAGTGGCAGTGGATCAGGGACAGATTTCACACTCAAGATCAGCAGAGTGGAGGCTGAGGATCTGGGAGTTTATTTCTGCTTTCAAGGTACACATGTTCCTCA", "ext_3prime": null, "aliases": [ "Kos et al: IGKV1-110*02_NOD" ], "locus": "IGK", "chromosome": null, "sequence_type": "V", "functional": true, "inference_type": "Rearranged only", "species": { "id": "NCBITAXON:10090", "label": "Mus musculus" }, "species_subgroup": "NOD/ShiLtJ", "species_subgroup_type": "strain", "status": null, "gene_designation": null, "subgroup_designation": null, "allele_designation": null, "allele_similarity_cluster_designation": null, "allele_similarity_cluster_member_id": null, "gene_start": 1, "gene_end": 302, "utr_5_prime_start": null, "utr_5_prime_end": null, "leader_1_start": null, "leader_1_end": null, "leader_2_start": null, "leader_2_end": null, "v_rs_start": null, "v_rs_end": null, "v_gene_delineations": [ { "sequence_delineation_id": "1", "delineation_scheme": "IMGT", "unaligned_sequence": "GATGTTGTGATGACCCAAACTCCACTCTCCCTGCCTGTCAGTCTTGGAGATCAAGCTTCCATCTCTTGCAGATCTAGTCAGAGCCTTGTACACAGCAATGGAAACACCTATTTATATTGGTACCTGCAGAAGCCAGGCCAGTCTCCAAAGCTCCTGATCTACAGGGTTTCCAACCGATTTTCTGGGGTCCCAGACAGGTTCAGTGGCAGTGGATCAGGGACAGATTTCACACTCAAGATCAGCAGAGTGGAGGCTGAGGATCTGGGAGTTTATTTCTGCTTTCAAGGTACACATGTTCCTCA", "aligned_sequence": "GATGTTGTGATGACCCAAACTCCACTCTCCCTGCCTGTCAGTCTTGGAGATCAAGCTTCCATCTCTTGCAGATCTAGTCAGAGCCTTGTACACAGC...AATGGAAACACCTATTTATATTGGTACCTGCAGAAGCCAGGCCAGTCTCCAAAGCTCCTGATCTACAGGGTT.....................TCCAACCGATTTTCTGGGGTCCCA...GACAGGTTCAGTGGCAGTGGA......TCAGGGACAGATTTCACACTCAAGATCAGCAGAGTGGAGGCTGAGGATCTGGGAGTTTATTTCTGCTTTCAAGGTACACATGTTCCTCA", "fwr1_start": 1, "fwr1_end": 78, "cdr1_start": 79, "cdr1_end": 111, "fwr2_start": 112, "fwr2_end": 162, "cdr2_start": 163, "cdr2_end": 171, "fwr3_start": 172, "fwr3_end": 279, "cdr3_start": 280, "alignment_labels": [ "1", "2", "3", "4", "5", "6", "7", "8", "9", "10", "11", "12", "13", "14", "15", "16", "17", "18", "19", "20", "21", "22", "23", "24", "25", "26", "27", "28", "29", "30", "31", "32", "33", "34", "35", "36", "37", "38", "39", "40", "41", "42", "43", "44", "45", "46", "47", "48", "49", "50", "51", "52", "53", "54", "55", "56", "57", "58", "59", "60", "61", "62", "63", "64", "65", "66", "67", "68", "69", "70", "71", "72", "73", "74", "75", "76", "77", "78", "79", "80", "81", "82", "83", "84", "85", "86", "87", "88", "89", "90", "91", "92", "93", "94", "95", "96", "97", "98", "99", "100", "101", "102", "103", "104" ] } ], "unrearranged_support": [], "rearranged_support": [], "paralogs": null, "curation": null, "curational_tags": null }, { "allele_description_id": "OGRDB:A01711", "allele_description_ref": "OGRDB:Mus musculus/NOD/ShiLtJ_IGK:IGKV-RJR4.1", "maintainer": "William Lees", "acknowledgements": null, "lab_address": "Birkbeck College, University of London, Malet Street, London", "release_version": 1, "release_date": "03-May-2022", "release_description": "https://www.amazon.co.uk/Metre-Metal-Blocked-Unblocker-Cleaner/dp/B00UNGS08K/ref=sr_1_18?keywords=drain+unblocker&qid=1651577716&sprefix=drain%2Caps%2C68&sr=8-18", "label": "IGKV0-RJR4*00", "sequence": "GACATTGTGATGACCCAGTCTCAAAAATTCATGTCCACATCAGTAGGAGAGAGGGTCAGCATCACCTGCAAGGCCAGTCAGAATGTAGGTACTAATGTAGCCTGGTATCAGCAGAAAGCAGGGCAGTCTCTTGAACTGCTGATCTATGGGGCATCCAACCGGCACACTGGAGTCCCTGATCGCTTCACAGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCACCAATGTGCAGTCTGAAGACATGACAAATTATTTCTGTGAGCAATATAGCAGCTATCCGCT", "coding_sequence": "GACATTGTGATGACCCAGTCTCAAAAATTCATGTCCACATCAGTAGGAGAGAGGGTCAGCATCACCTGCAAGGCCAGTCAGAATGTAGGTACTAATGTAGCCTGGTATCAGCAGAAAGCAGGGCAGTCTCTTGAACTGCTGATCTATGGGGCATCCAACCGGCACACTGGAGTCCCTGATCGCTTCACAGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCACCAATGTGCAGTCTGAAGACATGACAAATTATTTCTGTGAGCAATATAGCAGCTATCCGCT", "ext_3prime": null, "aliases": [ "Kos et al: IGKV6-23*01_S5820_NOD" ], "locus": "IGK", "chromosome": null, "sequence_type": "V", "functional": true, "inference_type": "Rearranged only", "species": { "id": "NCBITAXON:10090", "label": "Mus musculus" }, "species_subgroup": "NOD/ShiLtJ", "species_subgroup_type": "strain", "status": null, "gene_designation": null, "subgroup_designation": null, "allele_designation": null, "allele_similarity_cluster_designation": null, "allele_similarity_cluster_member_id": null, "gene_start": 1, "gene_end": 287, "utr_5_prime_start": null, "utr_5_prime_end": null, "leader_1_start": null, "leader_1_end": null, "leader_2_start": null, "leader_2_end": null, "v_rs_start": null, "v_rs_end": null, "v_gene_delineations": [ { "sequence_delineation_id": "1", "delineation_scheme": "IMGT", "unaligned_sequence": "GACATTGTGATGACCCAGTCTCAAAAATTCATGTCCACATCAGTAGGAGAGAGGGTCAGCATCACCTGCAAGGCCAGTCAGAATGTAGGTACTAATGTAGCCTGGTATCAGCAGAAAGCAGGGCAGTCTCTTGAACTGCTGATCTATGGGGCATCCAACCGGCACACTGGAGTCCCTGATCGCTTCACAGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCACCAATGTGCAGTCTGAAGACATGACAAATTATTTCTGTGAGCAATATAGCAGCTATCCGCT", "aligned_sequence": "GACATTGTGATGACCCAGTCTCAAAAATTCATGTCCACATCAGTAGGAGAGAGGGTCAGCATCACCTGCAAGGCCAGTCAGAATGTA..................GGTACTAATGTAGCCTGGTATCAGCAGAAAGCAGGGCAGTCTCTTGAACTGCTGATCTATGGGGCA.....................TCCAACCGGCACACTGGAGTCCCT...GATCGCTTCACAGGCAGTGGA......TCTGGGACAGATTTCACTCTCACCATCACCAATGTGCAGTCTGAAGACATGACAAATTATTTCTGTGAGCAATATAGCAGCTATCCGCT", "fwr1_start": 1, "fwr1_end": 78, "cdr1_start": 79, "cdr1_end": 96, "fwr2_start": 97, "fwr2_end": 147, "cdr2_start": 148, "cdr2_end": 156, "fwr3_start": 157, "fwr3_end": 264, "cdr3_start": 265, "alignment_labels": [ "1", "2", "3", "4", "5", "6", "7", "8", "9", "10", "11", "12", "13", "14", "15", "16", "17", "18", "19", "20", "21", "22", "23", "24", "25", "26", "27", "28", "29", "30", "31", "32", "33", "34", "35", "36", "37", "38", "39", "40", "41", "42", "43", "44", "45", "46", "47", "48", "49", "50", "51", "52", "53", "54", "55", "56", "57", "58", "59", "60", "61", "62", "63", "64", "65", "66", "67", "68", "69", "70", "71", "72", "73", "74", "75", "76", "77", "78", "79", "80", "81", "82", "83", "84", "85", "86", "87", "88", "89", "90", "91", "92", "93", "94", "95", "96", "97", "98", "99", "100", "101", "102", "103", "104" ] } ], "unrearranged_support": [], "rearranged_support": [], "paralogs": null, "curation": null, "curational_tags": null }, { "allele_description_id": "OGRDB:A01669", "allele_description_ref": "OGRDB:Mus musculus/NOD/ShiLtJ_IGK:IGKV-SAMO.1", "maintainer": "William Lees", "acknowledgements": null, "lab_address": "Birkbeck College, University of London, Malet Street, London", "release_version": 1, "release_date": "03-May-2022", "release_description": "https://www.amazon.co.uk/Metre-Metal-Blocked-Unblocker-Cleaner/dp/B00UNGS08K/ref=sr_1_18?keywords=drain+unblocker&qid=1651577716&sprefix=drain%2Caps%2C68&sr=8-18", "label": "IGKV0-SAMO*00", "sequence": "GACATCCAGATGACTCAGTCTCCAGCTTCCCTGTCTGCATCTGTGGGAGAAACTGTCACCATCACATGTCGAGCAAGTGAGAATATTGACAGTTATTTAGCATGGTATCAGCAGAAACAGGGAAAATCTCCTCAGCTCCTGGTCTATGCTGCAACACTCTTAGCAGATGGTGTGCCATCAAGGTTCAGTGGCAGTGGATCAGGCACACAGTATTCTCTCAAGATCAACAGCCTGCAGTCTGAAGATGTTGCGAGATATTACTGTCAACATTATTATAGTACTCCTCC", "coding_sequence": "GACATCCAGATGACTCAGTCTCCAGCTTCCCTGTCTGCATCTGTGGGAGAAACTGTCACCATCACATGTCGAGCAAGTGAGAATATTGACAGTTATTTAGCATGGTATCAGCAGAAACAGGGAAAATCTCCTCAGCTCCTGGTCTATGCTGCAACACTCTTAGCAGATGGTGTGCCATCAAGGTTCAGTGGCAGTGGATCAGGCACACAGTATTCTCTCAAGATCAACAGCCTGCAGTCTGAAGATGTTGCGAGATATTACTGTCAACATTATTATAGTACTCCTCC", "ext_3prime": null, "aliases": [ "Kos et al: IGKV12-46*01_S1254_NOD" ], "locus": "IGK", "chromosome": null, "sequence_type": "V", "functional": true, "inference_type": "Rearranged only", "species": { "id": "NCBITAXON:10090", "label": "Mus musculus" }, "species_subgroup": "NOD/ShiLtJ", "species_subgroup_type": "strain", "status": null, "gene_designation": null, "subgroup_designation": null, "allele_designation": null, "allele_similarity_cluster_designation": null, "allele_similarity_cluster_member_id": null, "gene_start": 1, "gene_end": 287, "utr_5_prime_start": null, "utr_5_prime_end": null, "leader_1_start": null, "leader_1_end": null, "leader_2_start": null, "leader_2_end": null, "v_rs_start": null, "v_rs_end": null, "v_gene_delineations": [ { "sequence_delineation_id": "1", "delineation_scheme": "IMGT", "unaligned_sequence": "GACATCCAGATGACTCAGTCTCCAGCTTCCCTGTCTGCATCTGTGGGAGAAACTGTCACCATCACATGTCGAGCAAGTGAGAATATTGACAGTTATTTAGCATGGTATCAGCAGAAACAGGGAAAATCTCCTCAGCTCCTGGTCTATGCTGCAACACTCTTAGCAGATGGTGTGCCATCAAGGTTCAGTGGCAGTGGATCAGGCACACAGTATTCTCTCAAGATCAACAGCCTGCAGTCTGAAGATGTTGCGAGATATTACTGTCAACATTATTATAGTACTCCTCC", "aligned_sequence": "GACATCCAGATGACTCAGTCTCCAGCTTCCCTGTCTGCATCTGTGGGAGAAACTGTCACCATCACATGTCGAGCAAGTGAGAATATT..................GACAGTTATTTAGCATGGTATCAGCAGAAACAGGGAAAATCTCCTCAGCTCCTGGTCTATGCTGCA.....................ACACTCTTAGCAGATGGTGTGCCA...TCAAGGTTCAGTGGCAGTGGA......TCAGGCACACAGTATTCTCTCAAGATCAACAGCCTGCAGTCTGAAGATGTTGCGAGATATTACTGTCAACATTATTATAGTACTCCTCC", "fwr1_start": 1, "fwr1_end": 78, "cdr1_start": 79, "cdr1_end": 96, "fwr2_start": 97, "fwr2_end": 147, "cdr2_start": 148, "cdr2_end": 156, "fwr3_start": 157, "fwr3_end": 264, "cdr3_start": 265, "alignment_labels": [ "1", "2", "3", "4", "5", "6", "7", "8", "9", "10", "11", "12", "13", "14", "15", "16", "17", "18", "19", "20", "21", "22", "23", "24", "25", "26", "27", "28", "29", "30", "31", "32", "33", "34", "35", "36", "37", "38", "39", "40", "41", "42", "43", "44", "45", "46", "47", "48", "49", "50", "51", "52", "53", "54", "55", "56", "57", "58", "59", "60", "61", "62", "63", "64", "65", "66", "67", "68", "69", "70", "71", "72", "73", "74", "75", "76", "77", "78", "79", "80", "81", "82", "83", "84", "85", "86", "87", "88", "89", "90", "91", "92", "93", "94", "95", "96", "97", "98", "99", "100", "101", "102", "103", "104" ] } ], "unrearranged_support": [], "rearranged_support": [], "paralogs": null, "curation": null, "curational_tags": null }, { "allele_description_id": "OGRDB:A01677", "allele_description_ref": "OGRDB:Mus musculus/NOD/ShiLtJ_IGK:IGKV-SARW.1", "maintainer": "William Lees", "acknowledgements": null, "lab_address": "Birkbeck College, University of London, Malet Street, London", "release_version": 1, "release_date": "03-May-2022", "release_description": "https://www.amazon.co.uk/Metre-Metal-Blocked-Unblocker-Cleaner/dp/B00UNGS08K/ref=sr_1_18?keywords=drain+unblocker&qid=1651577716&sprefix=drain%2Caps%2C68&sr=8-18", "label": "IGKV0-SARW*00", "sequence": "GACATTGTGATGTCACAGTCTCCATCCGCCCTAGCTGTGTCAGTTGGAGAGAAGGTCACTATGAGCTGCAAGTCCAGTCAGAGCCTTTTATATAGTAGCAATCAAAAGAACTACTTGGCCTGGTACCAGCAGAAACCAGGGCAGTCTCCTAAACTGTTAATCTACTGGGCATCCACTAGGGAATCTGGGGTCCCTGACCGCTTCACAGGCAGTAGATCAGGGACAGATTTCACTCTCACCATCAGCAGTGTGCAGGCTGAAGACCTGGCCGTTTATTACTGCAAGCAATCTTATA", "coding_sequence": "GACATTGTGATGTCACAGTCTCCATCCGCCCTAGCTGTGTCAGTTGGAGAGAAGGTCACTATGAGCTGCAAGTCCAGTCAGAGCCTTTTATATAGTAGCAATCAAAAGAACTACTTGGCCTGGTACCAGCAGAAACCAGGGCAGTCTCCTAAACTGTTAATCTACTGGGCATCCACTAGGGAATCTGGGGTCCCTGACCGCTTCACAGGCAGTAGATCAGGGACAGATTTCACTCTCACCATCAGCAGTGTGCAGGCTGAAGACCTGGCCGTTTATTACTGCAAGCAATCTTATA", "ext_3prime": null, "aliases": [ "Kos et al: IGKV8-30*01_S6795A_NOD" ], "locus": "IGK", "chromosome": null, "sequence_type": "V", "functional": true, "inference_type": "Rearranged only", "species": { "id": "NCBITAXON:10090", "label": "Mus musculus" }, "species_subgroup": "NOD/ShiLtJ", "species_subgroup_type": "strain", "status": null, "gene_designation": null, "subgroup_designation": null, "allele_designation": null, "allele_similarity_cluster_designation": null, "allele_similarity_cluster_member_id": null, "gene_start": 1, "gene_end": 295, "utr_5_prime_start": null, "utr_5_prime_end": null, "leader_1_start": null, "leader_1_end": null, "leader_2_start": null, "leader_2_end": null, "v_rs_start": null, "v_rs_end": null, "v_gene_delineations": [ { "sequence_delineation_id": "1", "delineation_scheme": "IMGT", "unaligned_sequence": "GACATTGTGATGTCACAGTCTCCATCCGCCCTAGCTGTGTCAGTTGGAGAGAAGGTCACTATGAGCTGCAAGTCCAGTCAGAGCCTTTTATATAGTAGCAATCAAAAGAACTACTTGGCCTGGTACCAGCAGAAACCAGGGCAGTCTCCTAAACTGTTAATCTACTGGGCATCCACTAGGGAATCTGGGGTCCCTGACCGCTTCACAGGCAGTAGATCAGGGACAGATTTCACTCTCACCATCAGCAGTGTGCAGGCTGAAGACCTGGCCGTTTATTACTGCAAGCAATCTTATA", "aligned_sequence": "GACATTGTGATGTCACAGTCTCCATCCGCCCTAGCTGTGTCAGTTGGAGAGAAGGTCACTATGAGCTGCAAGTCCAGTCAGAGCCTTTTATATAGTAGCAATCAAAAGAACTACTTGGCCTGGTACCAGCAGAAACCAGGGCAGTCTCCTAAACTGTTAATCTACTGGGCA.....................TCCACTAGGGAATCTGGGGTCCCT...GACCGCTTCACAGGCAGTAGA......TCAGGGACAGATTTCACTCTCACCATCAGCAGTGTGCAGGCTGAAGACCTGGCCGTTTATTACTGCAAGCAATCTTATA", "fwr1_start": 1, "fwr1_end": 78, "cdr1_start": 79, "cdr1_end": 114, "fwr2_start": 115, "fwr2_end": 165, "cdr2_start": 166, "cdr2_end": 174, "fwr3_start": 175, "fwr3_end": 282, "cdr3_start": 283, "alignment_labels": [ "1", "2", "3", "4", "5", "6", "7", "8", "9", "10", "11", "12", "13", "14", "15", "16", "17", "18", "19", "20", "21", "22", "23", "24", "25", "26", "27", "28", "29", "30", "31", "32", "33", "34", "35", "36", "37", "38", "39", "40", "41", "42", "43", "44", "45", "46", "47", "48", "49", "50", "51", "52", "53", "54", "55", "56", "57", "58", "59", "60", "61", "62", "63", "64", "65", "66", "67", "68", "69", "70", "71", "72", "73", "74", "75", "76", "77", "78", "79", "80", "81", "82", "83", "84", "85", "86", "87", "88", "89", "90", "91", "92", "93", "94", "95", "96", "97", "98", "99", "100", "101", "102", "103", "104" ] } ], "unrearranged_support": [], "rearranged_support": [], "paralogs": null, "curation": null, "curational_tags": null }, { "allele_description_id": "OGRDB:A01702", "allele_description_ref": "OGRDB:Mus musculus/NOD/ShiLtJ_IGK:IGKV-SNXE.1", "maintainer": "William Lees", "acknowledgements": null, "lab_address": "Birkbeck College, University of London, Malet Street, London", "release_version": 1, "release_date": "03-May-2022", "release_description": "https://www.amazon.co.uk/Metre-Metal-Blocked-Unblocker-Cleaner/dp/B00UNGS08K/ref=sr_1_18?keywords=drain+unblocker&qid=1651577716&sprefix=drain%2Caps%2C68&sr=8-18", "label": "IGKV0-SNXE*00", "sequence": "GATGTTGTGATGACCCAGACTCCACTCACTTTGTCAGTTACCATTGGACAACCAGCCTCTATCTCTTGCAAGTCAAGTCAGAGCCTCTTATATAGTAATGGAAAAACCTATTTGAACTGGTTATTACAGAGGCCAGGCCAGTCTCCAAAGCGCCTAATCTATCTGGTGTCTAAACTGGACTCTGGAGTCCCTGACAGGTTCACTGGCAGTGGATCAGGAACAGATTTTACACTGAAAATCAGCAGAGTGGAGGCTGAGGATTTGGGAGTTTATTACTGCGTGCAAGGTACACATTTTCCTCA", "coding_sequence": "GATGTTGTGATGACCCAGACTCCACTCACTTTGTCAGTTACCATTGGACAACCAGCCTCTATCTCTTGCAAGTCAAGTCAGAGCCTCTTATATAGTAATGGAAAAACCTATTTGAACTGGTTATTACAGAGGCCAGGCCAGTCTCCAAAGCGCCTAATCTATCTGGTGTCTAAACTGGACTCTGGAGTCCCTGACAGGTTCACTGGCAGTGGATCAGGAACAGATTTTACACTGAAAATCAGCAGAGTGGAGGCTGAGGATTTGGGAGTTTATTACTGCGTGCAAGGTACACATTTTCCTCA", "ext_3prime": null, "aliases": [ "Kos et al: IGKV1-133*01_S5139_NOD" ], "locus": "IGK", "chromosome": null, "sequence_type": "V", "functional": true, "inference_type": "Rearranged only", "species": { "id": "NCBITAXON:10090", "label": "Mus musculus" }, "species_subgroup": "NOD/ShiLtJ", "species_subgroup_type": "strain", "status": null, "gene_designation": null, "subgroup_designation": null, "allele_designation": null, "allele_similarity_cluster_designation": null, "allele_similarity_cluster_member_id": null, "gene_start": 1, "gene_end": 302, "utr_5_prime_start": null, "utr_5_prime_end": null, "leader_1_start": null, "leader_1_end": null, "leader_2_start": null, "leader_2_end": null, "v_rs_start": null, "v_rs_end": null, "v_gene_delineations": [ { "sequence_delineation_id": "1", "delineation_scheme": "IMGT", "unaligned_sequence": "GATGTTGTGATGACCCAGACTCCACTCACTTTGTCAGTTACCATTGGACAACCAGCCTCTATCTCTTGCAAGTCAAGTCAGAGCCTCTTATATAGTAATGGAAAAACCTATTTGAACTGGTTATTACAGAGGCCAGGCCAGTCTCCAAAGCGCCTAATCTATCTGGTGTCTAAACTGGACTCTGGAGTCCCTGACAGGTTCACTGGCAGTGGATCAGGAACAGATTTTACACTGAAAATCAGCAGAGTGGAGGCTGAGGATTTGGGAGTTTATTACTGCGTGCAAGGTACACATTTTCCTCA", "aligned_sequence": "GATGTTGTGATGACCCAGACTCCACTCACTTTGTCAGTTACCATTGGACAACCAGCCTCTATCTCTTGCAAGTCAAGTCAGAGCCTCTTATATAGT...AATGGAAAAACCTATTTGAACTGGTTATTACAGAGGCCAGGCCAGTCTCCAAAGCGCCTAATCTATCTGGTG.....................TCTAAACTGGACTCTGGAGTCCCT...GACAGGTTCACTGGCAGTGGA......TCAGGAACAGATTTTACACTGAAAATCAGCAGAGTGGAGGCTGAGGATTTGGGAGTTTATTACTGCGTGCAAGGTACACATTTTCCTCA", "fwr1_start": 1, "fwr1_end": 78, "cdr1_start": 79, "cdr1_end": 111, "fwr2_start": 112, "fwr2_end": 162, "cdr2_start": 163, "cdr2_end": 171, "fwr3_start": 172, "fwr3_end": 279, "cdr3_start": 280, "alignment_labels": [ "1", "2", "3", "4", "5", "6", "7", "8", "9", "10", "11", "12", "13", "14", "15", "16", "17", "18", "19", "20", "21", "22", "23", "24", "25", "26", "27", "28", "29", "30", "31", "32", "33", "34", "35", "36", "37", "38", "39", "40", "41", "42", "43", "44", "45", "46", "47", "48", "49", "50", "51", "52", "53", "54", "55", "56", "57", "58", "59", "60", "61", "62", "63", "64", "65", "66", "67", "68", "69", "70", "71", "72", "73", "74", "75", "76", "77", "78", "79", "80", "81", "82", "83", "84", "85", "86", "87", "88", "89", "90", "91", "92", "93", "94", "95", "96", "97", "98", "99", "100", "101", "102", "103", "104" ] } ], "unrearranged_support": [], "rearranged_support": [], "paralogs": null, "curation": null, "curational_tags": null }, { "allele_description_id": "OGRDB:A01714", "allele_description_ref": "OGRDB:Mus musculus/NOD/ShiLtJ_IGK:IGKV-TQLS.1", "maintainer": "William Lees", "acknowledgements": null, "lab_address": "Birkbeck College, University of London, Malet Street, London", "release_version": 1, "release_date": "03-May-2022", "release_description": "https://www.amazon.co.uk/Metre-Metal-Blocked-Unblocker-Cleaner/dp/B00UNGS08K/ref=sr_1_18?keywords=drain+unblocker&qid=1651577716&sprefix=drain%2Caps%2C68&sr=8-18", "label": "IGKV0-TQLS*00", "sequence": "GACATTGTGCTGACCCAATCTCCAGCTTCTTTGGCTGTGTCTCTAGGGCAGAGGGCCACCATATCCTGCAAGGCCAGCCAGAGTATCAATTATTACGGTGATAATTATATGCACTGGTTCCAACAGAAACCAGGACAGCCAACCAAACTCCTTATCTATGATGCATCCAACCTAGAATCTGGAGTTCCTGACAGGTTCAGTGGCAGTGGGTCTGGGACAGACTTCACCCTCAACATCCATCCTGTGGAGGAGGAGGATGCTGCAACCTATTACTGTCAGCAAAGCAAGGAGTTTCCTC", "coding_sequence": "GACATTGTGCTGACCCAATCTCCAGCTTCTTTGGCTGTGTCTCTAGGGCAGAGGGCCACCATATCCTGCAAGGCCAGCCAGAGTATCAATTATTACGGTGATAATTATATGCACTGGTTCCAACAGAAACCAGGACAGCCAACCAAACTCCTTATCTATGATGCATCCAACCTAGAATCTGGAGTTCCTGACAGGTTCAGTGGCAGTGGGTCTGGGACAGACTTCACCCTCAACATCCATCCTGTGGAGGAGGAGGATGCTGCAACCTATTACTGTCAGCAAAGCAAGGAGTTTCCTC", "ext_3prime": null, "aliases": [ "Kos et al: IGKV3-4*01_S4235_NOD" ], "locus": "IGK", "chromosome": null, "sequence_type": "V", "functional": true, "inference_type": "Rearranged only", "species": { "id": "NCBITAXON:10090", "label": "Mus musculus" }, "species_subgroup": "NOD/ShiLtJ", "species_subgroup_type": "strain", "status": null, "gene_designation": null, "subgroup_designation": null, "allele_designation": null, "allele_similarity_cluster_designation": null, "allele_similarity_cluster_member_id": null, "gene_start": 1, "gene_end": 298, "utr_5_prime_start": null, "utr_5_prime_end": null, "leader_1_start": null, "leader_1_end": null, "leader_2_start": null, "leader_2_end": null, "v_rs_start": null, "v_rs_end": null, "v_gene_delineations": [ { "sequence_delineation_id": "1", "delineation_scheme": "IMGT", "unaligned_sequence": "GACATTGTGCTGACCCAATCTCCAGCTTCTTTGGCTGTGTCTCTAGGGCAGAGGGCCACCATATCCTGCAAGGCCAGCCAGAGTATCAATTATTACGGTGATAATTATATGCACTGGTTCCAACAGAAACCAGGACAGCCAACCAAACTCCTTATCTATGATGCATCCAACCTAGAATCTGGAGTTCCTGACAGGTTCAGTGGCAGTGGGTCTGGGACAGACTTCACCCTCAACATCCATCCTGTGGAGGAGGAGGATGCTGCAACCTATTACTGTCAGCAAAGCAAGGAGTTTCCTC", "aligned_sequence": "GACATTGTGCTGACCCAATCTCCAGCTTCTTTGGCTGTGTCTCTAGGGCAGAGGGCCACCATATCCTGCAAGGCCAGCCAGAGTATCAATTAT......TACGGTGATAATTATATGCACTGGTTCCAACAGAAACCAGGACAGCCAACCAAACTCCTTATCTATGATGCA.....................TCCAACCTAGAATCTGGAGTTCCT...GACAGGTTCAGTGGCAGTGGG......TCTGGGACAGACTTCACCCTCAACATCCATCCTGTGGAGGAGGAGGATGCTGCAACCTATTACTGTCAGCAAAGCAAGGAGTTTCCTC", "fwr1_start": 1, "fwr1_end": 78, "cdr1_start": 79, "cdr1_end": 108, "fwr2_start": 109, "fwr2_end": 159, "cdr2_start": 160, "cdr2_end": 168, "fwr3_start": 169, "fwr3_end": 276, "cdr3_start": 277, "alignment_labels": [ "1", "2", "3", "4", "5", "6", "7", "8", "9", "10", "11", "12", "13", "14", "15", "16", "17", "18", "19", "20", "21", "22", "23", "24", "25", "26", "27", "28", "29", "30", "31", "32", "33", "34", "35", "36", "37", "38", "39", "40", "41", "42", "43", "44", "45", "46", "47", "48", "49", "50", "51", "52", "53", "54", "55", "56", "57", "58", "59", "60", "61", "62", "63", "64", "65", "66", "67", "68", "69", "70", "71", "72", "73", "74", "75", "76", "77", "78", "79", "80", "81", "82", "83", "84", "85", "86", "87", "88", "89", "90", "91", "92", "93", "94", "95", "96", "97", "98", "99", "100", "101", "102", "103", "104" ] } ], "unrearranged_support": [], "rearranged_support": [], "paralogs": null, "curation": null, "curational_tags": null }, { "allele_description_id": "OGRDB:A01712", "allele_description_ref": "OGRDB:Mus musculus/NOD/ShiLtJ_IGK:IGKV-TTMQ.1", "maintainer": "William Lees", "acknowledgements": null, "lab_address": "Birkbeck College, University of London, Malet Street, London", "release_version": 1, "release_date": "03-May-2022", "release_description": "https://www.amazon.co.uk/Metre-Metal-Blocked-Unblocker-Cleaner/dp/B00UNGS08K/ref=sr_1_18?keywords=drain+unblocker&qid=1651577716&sprefix=drain%2Caps%2C68&sr=8-18", "label": "IGKV0-TTMQ*00", "sequence": "CAAATTGTTCTCACCCAGTCTCCAGCAATCATGTCTGCATCTCCTGGGGAACGGGTCACCATGACCTGCAGTGCCAGCTCAAGTGTAAGTTCCAGCTACTTGTACTGGTACCAGCAGAAGCCAGGATCCTCCCCCAAACTATGGATTTATAGCACATCCAACCTGGCTTCTGGAGTCCCTGCTCGCTTCAGTGGCAGTGGGTCTGGGACCTCTTATTCTCTCACAATCAGCAGCATGGAGGCTGAAGATGCTGCCACTTATTACTGCCAGCAGTACAGTGGTTACCCATCCA", "coding_sequence": "CAAATTGTTCTCACCCAGTCTCCAGCAATCATGTCTGCATCTCCTGGGGAACGGGTCACCATGACCTGCAGTGCCAGCTCAAGTGTAAGTTCCAGCTACTTGTACTGGTACCAGCAGAAGCCAGGATCCTCCCCCAAACTATGGATTTATAGCACATCCAACCTGGCTTCTGGAGTCCCTGCTCGCTTCAGTGGCAGTGGGTCTGGGACCTCTTATTCTCTCACAATCAGCAGCATGGAGGCTGAAGATGCTGCCACTTATTACTGCCAGCAGTACAGTGGTTACCCATCCA", "ext_3prime": null, "aliases": [ "Kos et al: IGKV4-78*01_S3978_NOD" ], "locus": "IGK", "chromosome": null, "sequence_type": "V", "functional": true, "inference_type": "Rearranged only", "species": { "id": "NCBITAXON:10090", "label": "Mus musculus" }, "species_subgroup": "NOD/ShiLtJ", "species_subgroup_type": "strain", "status": null, "gene_designation": null, "subgroup_designation": null, "allele_designation": null, "allele_similarity_cluster_designation": null, "allele_similarity_cluster_member_id": null, "gene_start": 1, "gene_end": 292, "utr_5_prime_start": null, "utr_5_prime_end": null, "leader_1_start": null, "leader_1_end": null, "leader_2_start": null, "leader_2_end": null, "v_rs_start": null, "v_rs_end": null, "v_gene_delineations": [ { "sequence_delineation_id": "1", "delineation_scheme": "IMGT", "unaligned_sequence": "CAAATTGTTCTCACCCAGTCTCCAGCAATCATGTCTGCATCTCCTGGGGAACGGGTCACCATGACCTGCAGTGCCAGCTCAAGTGTAAGTTCCAGCTACTTGTACTGGTACCAGCAGAAGCCAGGATCCTCCCCCAAACTATGGATTTATAGCACATCCAACCTGGCTTCTGGAGTCCCTGCTCGCTTCAGTGGCAGTGGGTCTGGGACCTCTTATTCTCTCACAATCAGCAGCATGGAGGCTGAAGATGCTGCCACTTATTACTGCCAGCAGTACAGTGGTTACCCATCCA", "aligned_sequence": "CAAATTGTTCTCACCCAGTCTCCAGCAATCATGTCTGCATCTCCTGGGGAACGGGTCACCATGACCTGCAGTGCCAGCTCAAGTGTAAGT...............TCCAGCTACTTGTACTGGTACCAGCAGAAGCCAGGATCCTCCCCCAAACTATGGATTTATAGCACA.....................TCCAACCTGGCTTCTGGAGTCCCT...GCTCGCTTCAGTGGCAGTGGG......TCTGGGACCTCTTATTCTCTCACAATCAGCAGCATGGAGGCTGAAGATGCTGCCACTTATTACTGCCAGCAGTACAGTGGTTACCCATCCA", "fwr1_start": 1, "fwr1_end": 78, "cdr1_start": 79, "cdr1_end": 99, "fwr2_start": 100, "fwr2_end": 150, "cdr2_start": 151, "cdr2_end": 159, "fwr3_start": 160, "fwr3_end": 267, "cdr3_start": 268, "alignment_labels": [ "1", "2", "3", "4", "5", "6", "7", "8", "9", "10", "11", "12", "13", "14", "15", "16", "17", "18", "19", "20", "21", "22", "23", "24", "25", "26", "27", "28", "29", "30", "31", "32", "33", "34", "35", "36", "37", "38", "39", "40", "41", "42", "43", "44", "45", "46", "47", "48", "49", "50", "51", "52", "53", "54", "55", "56", "57", "58", "59", "60", "61", "62", "63", "64", "65", "66", "67", "68", "69", "70", "71", "72", "73", "74", "75", "76", "77", "78", "79", "80", "81", "82", "83", "84", "85", "86", "87", "88", "89", "90", "91", "92", "93", "94", "95", "96", "97", "98", "99", "100", "101", "102", "103", "104" ] } ], "unrearranged_support": [], "rearranged_support": [], "paralogs": null, "curation": null, "curational_tags": null }, { "allele_description_id": "OGRDB:A01667", "allele_description_ref": "OGRDB:Mus musculus/NOD/ShiLtJ_IGK:IGKV-UL5N.1", "maintainer": "William Lees", "acknowledgements": null, "lab_address": "Birkbeck College, University of London, Malet Street, London", "release_version": 1, "release_date": "03-May-2022", "release_description": "https://www.amazon.co.uk/Metre-Metal-Blocked-Unblocker-Cleaner/dp/B00UNGS08K/ref=sr_1_18?keywords=drain+unblocker&qid=1651577716&sprefix=drain%2Caps%2C68&sr=8-18", "label": "IGKV0-UL5N*00", "sequence": "GATATTGTGATGACTCAGGCTGCACCCTCTGTACCTGTCACTCCTGGAGAGTCAGTATCCATCTCCTGCAGGTCTAGTACGAGTCTCCTGCACAGTAGTGGCAAGCATAGGTTGTATTGGTTCCTACAGAGGCCAGGCCAGTCTCCTCAGCTCCTGATATATTATATGTCCAACCTTGCCTCAGGAGTCCCAGACAGGTTCAGTGGCAGTGGGTCAGGAACTGATTTCACACTGAGAATCAGTAGAGTGGAGGCTGAGGATTTTGGTGTTTATTATTGTATGCAAAGTCTAGAATATCCTTT", "coding_sequence": "GATATTGTGATGACTCAGGCTGCACCCTCTGTACCTGTCACTCCTGGAGAGTCAGTATCCATCTCCTGCAGGTCTAGTACGAGTCTCCTGCACAGTAGTGGCAAGCATAGGTTGTATTGGTTCCTACAGAGGCCAGGCCAGTCTCCTCAGCTCCTGATATATTATATGTCCAACCTTGCCTCAGGAGTCCCAGACAGGTTCAGTGGCAGTGGGTCAGGAACTGATTTCACACTGAGAATCAGTAGAGTGGAGGCTGAGGATTTTGGTGTTTATTATTGTATGCAAAGTCTAGAATATCCTTT", "ext_3prime": null, "aliases": [ "Kos et al: IGKV2-137*01_S0442_NOD" ], "locus": "IGK", "chromosome": null, "sequence_type": "V", "functional": true, "inference_type": "Rearranged only", "species": { "id": "NCBITAXON:10090", "label": "Mus musculus" }, "species_subgroup": "NOD/ShiLtJ", "species_subgroup_type": "strain", "status": null, "gene_designation": null, "subgroup_designation": null, "allele_designation": null, "allele_similarity_cluster_designation": null, "allele_similarity_cluster_member_id": null, "gene_start": 1, "gene_end": 302, "utr_5_prime_start": null, "utr_5_prime_end": null, "leader_1_start": null, "leader_1_end": null, "leader_2_start": null, "leader_2_end": null, "v_rs_start": null, "v_rs_end": null, "v_gene_delineations": [ { "sequence_delineation_id": "1", "delineation_scheme": "IMGT", "unaligned_sequence": "GATATTGTGATGACTCAGGCTGCACCCTCTGTACCTGTCACTCCTGGAGAGTCAGTATCCATCTCCTGCAGGTCTAGTACGAGTCTCCTGCACAGTAGTGGCAAGCATAGGTTGTATTGGTTCCTACAGAGGCCAGGCCAGTCTCCTCAGCTCCTGATATATTATATGTCCAACCTTGCCTCAGGAGTCCCAGACAGGTTCAGTGGCAGTGGGTCAGGAACTGATTTCACACTGAGAATCAGTAGAGTGGAGGCTGAGGATTTTGGTGTTTATTATTGTATGCAAAGTCTAGAATATCCTTT", "aligned_sequence": "GATATTGTGATGACTCAGGCTGCACCCTCTGTACCTGTCACTCCTGGAGAGTCAGTATCCATCTCCTGCAGGTCTAGTACGAGTCTCCTGCACAGT...AGTGGCAAGCATAGGTTGTATTGGTTCCTACAGAGGCCAGGCCAGTCTCCTCAGCTCCTGATATATTATATG.....................TCCAACCTTGCCTCAGGAGTCCCA...GACAGGTTCAGTGGCAGTGGG......TCAGGAACTGATTTCACACTGAGAATCAGTAGAGTGGAGGCTGAGGATTTTGGTGTTTATTATTGTATGCAAAGTCTAGAATATCCTTT", "fwr1_start": 1, "fwr1_end": 78, "cdr1_start": 79, "cdr1_end": 111, "fwr2_start": 112, "fwr2_end": 162, "cdr2_start": 163, "cdr2_end": 171, "fwr3_start": 172, "fwr3_end": 279, "cdr3_start": 280, "alignment_labels": [ "1", "2", "3", "4", "5", "6", "7", "8", "9", "10", "11", "12", "13", "14", "15", "16", "17", "18", "19", "20", "21", "22", "23", "24", "25", "26", "27", "28", "29", "30", "31", "32", "33", "34", "35", "36", "37", "38", "39", "40", "41", "42", "43", "44", "45", "46", "47", "48", "49", "50", "51", "52", "53", "54", "55", "56", "57", "58", "59", "60", "61", "62", "63", "64", "65", "66", "67", "68", "69", "70", "71", "72", "73", "74", "75", "76", "77", "78", "79", "80", "81", "82", "83", "84", "85", "86", "87", "88", "89", "90", "91", "92", "93", "94", "95", "96", "97", "98", "99", "100", "101", "102", "103", "104" ] } ], "unrearranged_support": [], "rearranged_support": [], "paralogs": null, "curation": null, "curational_tags": null }, { "allele_description_id": "OGRDB:A01681", "allele_description_ref": "OGRDB:Mus musculus/NOD/ShiLtJ_IGK:IGKV-VW6M.1", "maintainer": "William Lees", "acknowledgements": null, "lab_address": "Birkbeck College, University of London, Malet Street, London", "release_version": 1, "release_date": "03-May-2022", "release_description": "https://www.amazon.co.uk/Metre-Metal-Blocked-Unblocker-Cleaner/dp/B00UNGS08K/ref=sr_1_18?keywords=drain+unblocker&qid=1651577716&sprefix=drain%2Caps%2C68&sr=8-18", "label": "IGKV0-VW6M*00", "sequence": "GACATTTTGATGACTCAGTCTCCATCCTCCCTGACTGTGTCAGCAGGAGAGAAGGTCACTATGAGCTGCAAGTCCAGTCAGAGTCTTTTAGCTAGTGCCAACCAAAATAACTACTTGGCCTGGCACCAGCAGAAACCAGGACGATCTCCTAAAATGCTGATAATTTGGGCATCCACTAGGGTATCTGGAGTCCCTGATCGCTTCATAGGCAGTGGATCTGGGACGGATTTCACTCTGACCATCAACAGTGTGCAGGCTGAAGATCTGGCTGTTTATTACTGTCAGCAGTCCTACAGCGCTCCTAC", "coding_sequence": "GACATTTTGATGACTCAGTCTCCATCCTCCCTGACTGTGTCAGCAGGAGAGAAGGTCACTATGAGCTGCAAGTCCAGTCAGAGTCTTTTAGCTAGTGCCAACCAAAATAACTACTTGGCCTGGCACCAGCAGAAACCAGGACGATCTCCTAAAATGCTGATAATTTGGGCATCCACTAGGGTATCTGGAGTCCCTGATCGCTTCATAGGCAGTGGATCTGGGACGGATTTCACTCTGACCATCAACAGTGTGCAGGCTGAAGATCTGGCTGTTTATTACTGTCAGCAGTCCTACAGCGCTCCTAC", "ext_3prime": null, "aliases": [ "Kos et al: IGKV8-34*01_S3615_NOD" ], "locus": "IGK", "chromosome": null, "sequence_type": "V", "functional": true, "inference_type": "Rearranged only", "species": { "id": "NCBITAXON:10090", "label": "Mus musculus" }, "species_subgroup": "NOD/ShiLtJ", "species_subgroup_type": "strain", "status": null, "gene_designation": null, "subgroup_designation": null, "allele_designation": null, "allele_similarity_cluster_designation": null, "allele_similarity_cluster_member_id": null, "gene_start": 1, "gene_end": 305, "utr_5_prime_start": null, "utr_5_prime_end": null, "leader_1_start": null, "leader_1_end": null, "leader_2_start": null, "leader_2_end": null, "v_rs_start": null, "v_rs_end": null, "v_gene_delineations": [ { "sequence_delineation_id": "1", "delineation_scheme": "IMGT", "unaligned_sequence": "GACATTTTGATGACTCAGTCTCCATCCTCCCTGACTGTGTCAGCAGGAGAGAAGGTCACTATGAGCTGCAAGTCCAGTCAGAGTCTTTTAGCTAGTGCCAACCAAAATAACTACTTGGCCTGGCACCAGCAGAAACCAGGACGATCTCCTAAAATGCTGATAATTTGGGCATCCACTAGGGTATCTGGAGTCCCTGATCGCTTCATAGGCAGTGGATCTGGGACGGATTTCACTCTGACCATCAACAGTGTGCAGGCTGAAGATCTGGCTGTTTATTACTGTCAGCAGTCCTACAGCGCTCCTAC", "aligned_sequence": "GACATTTTGATGACTCAGTCTCCATCCTCCCTGACTGTGTCAGCAGGAGAGAAGGTCACTATGAGCTGCAAGTCCAGTCAGAGTCTTTTAGCTAGTGCCAACCAAAATAACTACTTGGCCTGGCACCAGCAGAAACCAGGACGATCTCCTAAAATGCTGATAATTTGGGCA.....................TCCACTAGGGTATCTGGAGTCCCT...GATCGCTTCATAGGCAGTGGA......TCTGGGACGGATTTCACTCTGACCATCAACAGTGTGCAGGCTGAAGATCTGGCTGTTTATTACTGTCAGCAGTCCTACAGCGCTCCTAC", "fwr1_start": 1, "fwr1_end": 78, "cdr1_start": 79, "cdr1_end": 114, "fwr2_start": 115, "fwr2_end": 165, "cdr2_start": 166, "cdr2_end": 174, "fwr3_start": 175, "fwr3_end": 282, "cdr3_start": 283, "alignment_labels": [ "1", "2", "3", "4", "5", "6", "7", "8", "9", "10", "11", "12", "13", "14", "15", "16", "17", "18", "19", "20", "21", "22", "23", "24", "25", "26", "27", "28", "29", "30", "31", "32", "33", "34", "35", "36", "37", "38", "39", "40", "41", "42", "43", "44", "45", "46", "47", "48", "49", "50", "51", "52", "53", "54", "55", "56", "57", "58", "59", "60", "61", "62", "63", "64", "65", "66", "67", "68", "69", "70", "71", "72", "73", "74", "75", "76", "77", "78", "79", "80", "81", "82", "83", "84", "85", "86", "87", "88", "89", "90", "91", "92", "93", "94", "95", "96", "97", "98", "99", "100", "101", "102", "103", "104" ] } ], "unrearranged_support": [], "rearranged_support": [], "paralogs": null, "curation": null, "curational_tags": null }, { "allele_description_id": "OGRDB:A01692", "allele_description_ref": "OGRDB:Mus musculus/NOD/ShiLtJ_IGK:IGKV-WLGZ.1", "maintainer": "William Lees", "acknowledgements": null, "lab_address": "Birkbeck College, University of London, Malet Street, London", "release_version": 1, "release_date": "03-May-2022", "release_description": "https://www.amazon.co.uk/Metre-Metal-Blocked-Unblocker-Cleaner/dp/B00UNGS08K/ref=sr_1_18?keywords=drain+unblocker&qid=1651577716&sprefix=drain%2Caps%2C68&sr=8-18", "label": "IGKV0-WLGZ*00", "sequence": "GATGTTGTGATGACCCAAACTCCACTCTCCCTGCCTGTCAGTCTTGGAGATCAAGCCTCCATCTCTTGCAGATCTAGTCAGAGCATTGTACATAGTAATGGAAACACCTATTTAGAATGGTACCTGCAGAAGCCAGGCCAGTCTCCAAAGCTCCTGATCTACAAAGTTTCCAACCGATTTTCTGGGGTCCCAGACAGGTTCAGTGGCAGTGGATCAGGGACAGATTTCACACTCAAGATCAGCAGAGTGGAGGCTGAGGATCTGGGAGTTTATTACTGCTTTCAAGGTTCACATGTTCCTC", "coding_sequence": "GATGTTGTGATGACCCAAACTCCACTCTCCCTGCCTGTCAGTCTTGGAGATCAAGCCTCCATCTCTTGCAGATCTAGTCAGAGCATTGTACATAGTAATGGAAACACCTATTTAGAATGGTACCTGCAGAAGCCAGGCCAGTCTCCAAAGCTCCTGATCTACAAAGTTTCCAACCGATTTTCTGGGGTCCCAGACAGGTTCAGTGGCAGTGGATCAGGGACAGATTTCACACTCAAGATCAGCAGAGTGGAGGCTGAGGATCTGGGAGTTTATTACTGCTTTCAAGGTTCACATGTTCCTC", "ext_3prime": null, "aliases": [ "Kos et al: IGKV1-117*01_S1348_NOD" ], "locus": "IGK", "chromosome": null, "sequence_type": "V", "functional": true, "inference_type": "Rearranged only", "species": { "id": "NCBITAXON:10090", "label": "Mus musculus" }, "species_subgroup": "NOD/ShiLtJ", "species_subgroup_type": "strain", "status": null, "gene_designation": null, "subgroup_designation": null, "allele_designation": null, "allele_similarity_cluster_designation": null, "allele_similarity_cluster_member_id": null, "gene_start": 1, "gene_end": 301, "utr_5_prime_start": null, "utr_5_prime_end": null, "leader_1_start": null, "leader_1_end": null, "leader_2_start": null, "leader_2_end": null, "v_rs_start": null, "v_rs_end": null, "v_gene_delineations": [ { "sequence_delineation_id": "1", "delineation_scheme": "IMGT", "unaligned_sequence": "GATGTTGTGATGACCCAAACTCCACTCTCCCTGCCTGTCAGTCTTGGAGATCAAGCCTCCATCTCTTGCAGATCTAGTCAGAGCATTGTACATAGTAATGGAAACACCTATTTAGAATGGTACCTGCAGAAGCCAGGCCAGTCTCCAAAGCTCCTGATCTACAAAGTTTCCAACCGATTTTCTGGGGTCCCAGACAGGTTCAGTGGCAGTGGATCAGGGACAGATTTCACACTCAAGATCAGCAGAGTGGAGGCTGAGGATCTGGGAGTTTATTACTGCTTTCAAGGTTCACATGTTCCTC", "aligned_sequence": "GATGTTGTGATGACCCAAACTCCACTCTCCCTGCCTGTCAGTCTTGGAGATCAAGCCTCCATCTCTTGCAGATCTAGTCAGAGCATTGTACATAGT...AATGGAAACACCTATTTAGAATGGTACCTGCAGAAGCCAGGCCAGTCTCCAAAGCTCCTGATCTACAAAGTT.....................TCCAACCGATTTTCTGGGGTCCCA...GACAGGTTCAGTGGCAGTGGA......TCAGGGACAGATTTCACACTCAAGATCAGCAGAGTGGAGGCTGAGGATCTGGGAGTTTATTACTGCTTTCAAGGTTCACATGTTCCTC", "fwr1_start": 1, "fwr1_end": 78, "cdr1_start": 79, "cdr1_end": 111, "fwr2_start": 112, "fwr2_end": 162, "cdr2_start": 163, "cdr2_end": 171, "fwr3_start": 172, "fwr3_end": 279, "cdr3_start": 280, "alignment_labels": [ "1", "2", "3", "4", "5", "6", "7", "8", "9", "10", "11", "12", "13", "14", "15", "16", "17", "18", "19", "20", "21", "22", "23", "24", "25", "26", "27", "28", "29", "30", "31", "32", "33", "34", "35", "36", "37", "38", "39", "40", "41", "42", "43", "44", "45", "46", "47", "48", "49", "50", "51", "52", "53", "54", "55", "56", "57", "58", "59", "60", "61", "62", "63", "64", "65", "66", "67", "68", "69", "70", "71", "72", "73", "74", "75", "76", "77", "78", "79", "80", "81", "82", "83", "84", "85", "86", "87", "88", "89", "90", "91", "92", "93", "94", "95", "96", "97", "98", "99", "100", "101", "102", "103", "104" ] } ], "unrearranged_support": [], "rearranged_support": [], "paralogs": null, "curation": null, "curational_tags": null }, { "allele_description_id": "OGRDB:A01693", "allele_description_ref": "OGRDB:Mus musculus/NOD/ShiLtJ_IGK:IGKV-X7JW.1", "maintainer": "William Lees", "acknowledgements": null, "lab_address": "Birkbeck College, University of London, Malet Street, London", "release_version": 1, "release_date": "03-May-2022", "release_description": "https://www.amazon.co.uk/Metre-Metal-Blocked-Unblocker-Cleaner/dp/B00UNGS08K/ref=sr_1_18?keywords=drain+unblocker&qid=1651577716&sprefix=drain%2Caps%2C68&sr=8-18", "label": "IGKV0-X7JW*00", "sequence": "GATATTGTGATGACTCAGGCTGCACCCTCTGTACCTGTCACTCCTGGAGAGTCAGTATCCATCTCCTGCAGGTCTAGTAAGAGTCTCCTGCATAGTAATGGCAACACTTACTTGTATTGGTTCCTACAGAGGCCTGGCCAGTCTCCTCAGCTCCTGATATATCGGATGTCCAACCTTGCCTCAGGAGTCCCAGACAGGTTCAGTGGCAGTGGGTCAGGAACTGCTTTCACACTGAGAATCAGTAGAGTCGAGGCTGAGGATGTGGGTGTTTATTACTGTATGCAACATCTAGAGTATCCTTT", "coding_sequence": "GATATTGTGATGACTCAGGCTGCACCCTCTGTACCTGTCACTCCTGGAGAGTCAGTATCCATCTCCTGCAGGTCTAGTAAGAGTCTCCTGCATAGTAATGGCAACACTTACTTGTATTGGTTCCTACAGAGGCCTGGCCAGTCTCCTCAGCTCCTGATATATCGGATGTCCAACCTTGCCTCAGGAGTCCCAGACAGGTTCAGTGGCAGTGGGTCAGGAACTGCTTTCACACTGAGAATCAGTAGAGTCGAGGCTGAGGATGTGGGTGTTTATTACTGTATGCAACATCTAGAGTATCCTTT", "ext_3prime": null, "aliases": [ "Kos et al: IGKV2-137*01_S6567_NOD" ], "locus": "IGK", "chromosome": null, "sequence_type": "V", "functional": true, "inference_type": "Rearranged only", "species": { "id": "NCBITAXON:10090", "label": "Mus musculus" }, "species_subgroup": "NOD/ShiLtJ", "species_subgroup_type": "strain", "status": null, "gene_designation": null, "subgroup_designation": null, "allele_designation": null, "allele_similarity_cluster_designation": null, "allele_similarity_cluster_member_id": null, "gene_start": 1, "gene_end": 302, "utr_5_prime_start": null, "utr_5_prime_end": null, "leader_1_start": null, "leader_1_end": null, "leader_2_start": null, "leader_2_end": null, "v_rs_start": null, "v_rs_end": null, "v_gene_delineations": [ { "sequence_delineation_id": "1", "delineation_scheme": "IMGT", "unaligned_sequence": "GATATTGTGATGACTCAGGCTGCACCCTCTGTACCTGTCACTCCTGGAGAGTCAGTATCCATCTCCTGCAGGTCTAGTAAGAGTCTCCTGCATAGTAATGGCAACACTTACTTGTATTGGTTCCTACAGAGGCCTGGCCAGTCTCCTCAGCTCCTGATATATCGGATGTCCAACCTTGCCTCAGGAGTCCCAGACAGGTTCAGTGGCAGTGGGTCAGGAACTGCTTTCACACTGAGAATCAGTAGAGTCGAGGCTGAGGATGTGGGTGTTTATTACTGTATGCAACATCTAGAGTATCCTTT", "aligned_sequence": "GATATTGTGATGACTCAGGCTGCACCCTCTGTACCTGTCACTCCTGGAGAGTCAGTATCCATCTCCTGCAGGTCTAGTAAGAGTCTCCTGCATAGT...AATGGCAACACTTACTTGTATTGGTTCCTACAGAGGCCTGGCCAGTCTCCTCAGCTCCTGATATATCGGATG.....................TCCAACCTTGCCTCAGGAGTCCCA...GACAGGTTCAGTGGCAGTGGG......TCAGGAACTGCTTTCACACTGAGAATCAGTAGAGTCGAGGCTGAGGATGTGGGTGTTTATTACTGTATGCAACATCTAGAGTATCCTTT", "fwr1_start": 1, "fwr1_end": 78, "cdr1_start": 79, "cdr1_end": 111, "fwr2_start": 112, "fwr2_end": 162, "cdr2_start": 163, "cdr2_end": 171, "fwr3_start": 172, "fwr3_end": 279, "cdr3_start": 280, "alignment_labels": [ "1", "2", "3", "4", "5", "6", "7", "8", "9", "10", "11", "12", "13", "14", "15", "16", "17", "18", "19", "20", "21", "22", "23", "24", "25", "26", "27", "28", "29", "30", "31", "32", "33", "34", "35", "36", "37", "38", "39", "40", "41", "42", "43", "44", "45", "46", "47", "48", "49", "50", "51", "52", "53", "54", "55", "56", "57", "58", "59", "60", "61", "62", "63", "64", "65", "66", "67", "68", "69", "70", "71", "72", "73", "74", "75", "76", "77", "78", "79", "80", "81", "82", "83", "84", "85", "86", "87", "88", "89", "90", "91", "92", "93", "94", "95", "96", "97", "98", "99", "100", "101", "102", "103", "104" ] } ], "unrearranged_support": [], "rearranged_support": [], "paralogs": null, "curation": null, "curational_tags": null }, { "allele_description_id": "OGRDB:A01695", "allele_description_ref": "OGRDB:Mus musculus/NOD/ShiLtJ_IGK:IGKV-XCG7.1", "maintainer": "William Lees", "acknowledgements": null, "lab_address": "Birkbeck College, University of London, Malet Street, London", "release_version": 1, "release_date": "03-May-2022", "release_description": "https://www.amazon.co.uk/Metre-Metal-Blocked-Unblocker-Cleaner/dp/B00UNGS08K/ref=sr_1_18?keywords=drain+unblocker&qid=1651577716&sprefix=drain%2Caps%2C68&sr=8-18", "label": "IGKV0-XCG7*00", "sequence": "GATGTTGTGATGACCCAGACTCCACTGTCTTTGTCGGTTACCATTGGACAACCAGCCTCTATCTCTTGCAAGTCAAGTCAGAGCCTCTTATATAGTGATGGAAAGACATATTTGAATTGGTTACAACAGAGGCCAGGCCAGTCTCCAAAGCGCCTAATGTATCAGGTGTCCAAACTGGACCCTGGCATCCCTGACAGGTTCAGTGGCAGTGGATCAGAGACAGATTTTACACTTAAAATCAGCAGAGTGGAGGCTGAGGATTTGGGAGTTTATTACTGCTTGCAAGGTACATATTATCCTCA", "coding_sequence": "GATGTTGTGATGACCCAGACTCCACTGTCTTTGTCGGTTACCATTGGACAACCAGCCTCTATCTCTTGCAAGTCAAGTCAGAGCCTCTTATATAGTGATGGAAAGACATATTTGAATTGGTTACAACAGAGGCCAGGCCAGTCTCCAAAGCGCCTAATGTATCAGGTGTCCAAACTGGACCCTGGCATCCCTGACAGGTTCAGTGGCAGTGGATCAGAGACAGATTTTACACTTAAAATCAGCAGAGTGGAGGCTGAGGATTTGGGAGTTTATTACTGCTTGCAAGGTACATATTATCCTCA", "ext_3prime": null, "aliases": [ "Kos et al: IGKV1-132*01_S5178_NOD" ], "locus": "IGK", "chromosome": null, "sequence_type": "V", "functional": true, "inference_type": "Rearranged only", "species": { "id": "NCBITAXON:10090", "label": "Mus musculus" }, "species_subgroup": "NOD/ShiLtJ", "species_subgroup_type": "strain", "status": null, "gene_designation": null, "subgroup_designation": null, "allele_designation": null, "allele_similarity_cluster_designation": null, "allele_similarity_cluster_member_id": null, "gene_start": 1, "gene_end": 302, "utr_5_prime_start": null, "utr_5_prime_end": null, "leader_1_start": null, "leader_1_end": null, "leader_2_start": null, "leader_2_end": null, "v_rs_start": null, "v_rs_end": null, "v_gene_delineations": [ { "sequence_delineation_id": "1", "delineation_scheme": "IMGT", "unaligned_sequence": "GATGTTGTGATGACCCAGACTCCACTGTCTTTGTCGGTTACCATTGGACAACCAGCCTCTATCTCTTGCAAGTCAAGTCAGAGCCTCTTATATAGTGATGGAAAGACATATTTGAATTGGTTACAACAGAGGCCAGGCCAGTCTCCAAAGCGCCTAATGTATCAGGTGTCCAAACTGGACCCTGGCATCCCTGACAGGTTCAGTGGCAGTGGATCAGAGACAGATTTTACACTTAAAATCAGCAGAGTGGAGGCTGAGGATTTGGGAGTTTATTACTGCTTGCAAGGTACATATTATCCTCA", "aligned_sequence": "GATGTTGTGATGACCCAGACTCCACTGTCTTTGTCGGTTACCATTGGACAACCAGCCTCTATCTCTTGCAAGTCAAGTCAGAGCCTCTTATATAGT...GATGGAAAGACATATTTGAATTGGTTACAACAGAGGCCAGGCCAGTCTCCAAAGCGCCTAATGTATCAGGTG.....................TCCAAACTGGACCCTGGCATCCCT...GACAGGTTCAGTGGCAGTGGA......TCAGAGACAGATTTTACACTTAAAATCAGCAGAGTGGAGGCTGAGGATTTGGGAGTTTATTACTGCTTGCAAGGTACATATTATCCTCA", "fwr1_start": 1, "fwr1_end": 78, "cdr1_start": 79, "cdr1_end": 111, "fwr2_start": 112, "fwr2_end": 162, "cdr2_start": 163, "cdr2_end": 171, "fwr3_start": 172, "fwr3_end": 279, "cdr3_start": 280, "alignment_labels": [ "1", "2", "3", "4", "5", "6", "7", "8", "9", "10", "11", "12", "13", "14", "15", "16", "17", "18", "19", "20", "21", "22", "23", "24", "25", "26", "27", "28", "29", "30", "31", "32", "33", "34", "35", "36", "37", "38", "39", "40", "41", "42", "43", "44", "45", "46", "47", "48", "49", "50", "51", "52", "53", "54", "55", "56", "57", "58", "59", "60", "61", "62", "63", "64", "65", "66", "67", "68", "69", "70", "71", "72", "73", "74", "75", "76", "77", "78", "79", "80", "81", "82", "83", "84", "85", "86", "87", "88", "89", "90", "91", "92", "93", "94", "95", "96", "97", "98", "99", "100", "101", "102", "103", "104" ] } ], "unrearranged_support": [], "rearranged_support": [], "paralogs": null, "curation": null, "curational_tags": null }, { "allele_description_id": "OGRDB:A01665", "allele_description_ref": "OGRDB:Mus musculus/NOD/ShiLtJ_IGK:IGKV-YARW.1", "maintainer": "William Lees", "acknowledgements": null, "lab_address": "Birkbeck College, University of London, Malet Street, London", "release_version": 1, "release_date": "03-May-2022", "release_description": "https://www.amazon.co.uk/Metre-Metal-Blocked-Unblocker-Cleaner/dp/B00UNGS08K/ref=sr_1_18?keywords=drain+unblocker&qid=1651577716&sprefix=drain%2Caps%2C68&sr=8-18", "label": "IGKV0-YARW*00", "sequence": "AACATTGTAATGACCCAATCTCCCAAATCCATGTCCATGTCAGTAGGAGAGAGGGTCACCTTGAGCTGCAAGGCCAGTGAGAATGTGGGTACTTATGTATCCTGGTATCAACAGAAACCAGAGCAGTCTCCTAAACTGCTGATATACGGGGCATCCAACCGGTACACTGGGGTCCCCGATCGCTTCACAGGCAGTGGATCTGCAACAGATTTCACTCTGACCATCAGCAGTGTGCAGGCTGAAGACCTTGCAGATTATTACTGTGGACAGAGTTACAGCTATCCTCC", "coding_sequence": "AACATTGTAATGACCCAATCTCCCAAATCCATGTCCATGTCAGTAGGAGAGAGGGTCACCTTGAGCTGCAAGGCCAGTGAGAATGTGGGTACTTATGTATCCTGGTATCAACAGAAACCAGAGCAGTCTCCTAAACTGCTGATATACGGGGCATCCAACCGGTACACTGGGGTCCCCGATCGCTTCACAGGCAGTGGATCTGCAACAGATTTCACTCTGACCATCAGCAGTGTGCAGGCTGAAGACCTTGCAGATTATTACTGTGGACAGAGTTACAGCTATCCTCC", "ext_3prime": null, "aliases": [ "Kos et al: IGKV6-20*01_S2082_NOD" ], "locus": "IGK", "chromosome": null, "sequence_type": "V", "functional": true, "inference_type": "Rearranged only", "species": { "id": "NCBITAXON:10090", "label": "Mus musculus" }, "species_subgroup": "NOD/ShiLtJ", "species_subgroup_type": "strain", "status": null, "gene_designation": null, "subgroup_designation": null, "allele_designation": null, "allele_similarity_cluster_designation": null, "allele_similarity_cluster_member_id": null, "gene_start": 1, "gene_end": 287, "utr_5_prime_start": null, "utr_5_prime_end": null, "leader_1_start": null, "leader_1_end": null, "leader_2_start": null, "leader_2_end": null, "v_rs_start": null, "v_rs_end": null, "v_gene_delineations": [ { "sequence_delineation_id": "1", "delineation_scheme": "IMGT", "unaligned_sequence": "AACATTGTAATGACCCAATCTCCCAAATCCATGTCCATGTCAGTAGGAGAGAGGGTCACCTTGAGCTGCAAGGCCAGTGAGAATGTGGGTACTTATGTATCCTGGTATCAACAGAAACCAGAGCAGTCTCCTAAACTGCTGATATACGGGGCATCCAACCGGTACACTGGGGTCCCCGATCGCTTCACAGGCAGTGGATCTGCAACAGATTTCACTCTGACCATCAGCAGTGTGCAGGCTGAAGACCTTGCAGATTATTACTGTGGACAGAGTTACAGCTATCCTCC", "aligned_sequence": "AACATTGTAATGACCCAATCTCCCAAATCCATGTCCATGTCAGTAGGAGAGAGGGTCACCTTGAGCTGCAAGGCCAGTGAGAATGTG..................GGTACTTATGTATCCTGGTATCAACAGAAACCAGAGCAGTCTCCTAAACTGCTGATATACGGGGCA.....................TCCAACCGGTACACTGGGGTCCCC...GATCGCTTCACAGGCAGTGGA......TCTGCAACAGATTTCACTCTGACCATCAGCAGTGTGCAGGCTGAAGACCTTGCAGATTATTACTGTGGACAGAGTTACAGCTATCCTCC", "fwr1_start": 1, "fwr1_end": 78, "cdr1_start": 79, "cdr1_end": 96, "fwr2_start": 97, "fwr2_end": 147, "cdr2_start": 148, "cdr2_end": 156, "fwr3_start": 157, "fwr3_end": 264, "cdr3_start": 265, "alignment_labels": [ "1", "2", "3", "4", "5", "6", "7", "8", "9", "10", "11", "12", "13", "14", "15", "16", "17", "18", "19", "20", "21", "22", "23", "24", "25", "26", "27", "28", "29", "30", "31", "32", "33", "34", "35", "36", "37", "38", "39", "40", "41", "42", "43", "44", "45", "46", "47", "48", "49", "50", "51", "52", "53", "54", "55", "56", "57", "58", "59", "60", "61", "62", "63", "64", "65", "66", "67", "68", "69", "70", "71", "72", "73", "74", "75", "76", "77", "78", "79", "80", "81", "82", "83", "84", "85", "86", "87", "88", "89", "90", "91", "92", "93", "94", "95", "96", "97", "98", "99", "100", "101", "102", "103", "104" ] } ], "unrearranged_support": [], "rearranged_support": [], "paralogs": null, "curation": null, "curational_tags": null }, { "allele_description_id": "OGRDB:A01704", "allele_description_ref": "OGRDB:Mus musculus/NOD/ShiLtJ_IGK:IGKV-YJ5P.1", "maintainer": "William Lees", "acknowledgements": null, "lab_address": "Birkbeck College, University of London, Malet Street, London", "release_version": 1, "release_date": "03-May-2022", "release_description": "https://www.amazon.co.uk/Metre-Metal-Blocked-Unblocker-Cleaner/dp/B00UNGS08K/ref=sr_1_18?keywords=drain+unblocker&qid=1651577716&sprefix=drain%2Caps%2C68&sr=8-18", "label": "IGKV0-YJ5P*00", "sequence": "GACATCCAGATGACACAGTCTCCATCCTCACTGTCTGCATCTCTGGGAGGCAAAGTCACCATCACTTGCAAGGCAAGCCAAGACATTAACAAGAATATAGCTTGGTACCAACACAAGCCTGGAAAAGGTCCTAGGCTGCTCATATGGTACACATCTACATTACAGCCAGGCATCCCATCAAGGTTCAGTGGAAGTGGGTCTGGGAGAGATTATTCCTTCAGCATCAGCAACCTGGAGCCTGAAGATATTGCAACTTATTACTGTCTACAGTATGATAATCTTCCACC", "coding_sequence": "GACATCCAGATGACACAGTCTCCATCCTCACTGTCTGCATCTCTGGGAGGCAAAGTCACCATCACTTGCAAGGCAAGCCAAGACATTAACAAGAATATAGCTTGGTACCAACACAAGCCTGGAAAAGGTCCTAGGCTGCTCATATGGTACACATCTACATTACAGCCAGGCATCCCATCAAGGTTCAGTGGAAGTGGGTCTGGGAGAGATTATTCCTTCAGCATCAGCAACCTGGAGCCTGAAGATATTGCAACTTATTACTGTCTACAGTATGATAATCTTCCACC", "ext_3prime": null, "aliases": [ "Kos et al: IGKV19-93*01_S8964_NOD" ], "locus": "IGK", "chromosome": null, "sequence_type": "V", "functional": true, "inference_type": "Rearranged only", "species": { "id": "NCBITAXON:10090", "label": "Mus musculus" }, "species_subgroup": "NOD/ShiLtJ", "species_subgroup_type": "strain", "status": null, "gene_designation": null, "subgroup_designation": null, "allele_designation": null, "allele_similarity_cluster_designation": null, "allele_similarity_cluster_member_id": null, "gene_start": 1, "gene_end": 287, "utr_5_prime_start": null, "utr_5_prime_end": null, "leader_1_start": null, "leader_1_end": null, "leader_2_start": null, "leader_2_end": null, "v_rs_start": null, "v_rs_end": null, "v_gene_delineations": [ { "sequence_delineation_id": "1", "delineation_scheme": "IMGT", "unaligned_sequence": "GACATCCAGATGACACAGTCTCCATCCTCACTGTCTGCATCTCTGGGAGGCAAAGTCACCATCACTTGCAAGGCAAGCCAAGACATTAACAAGAATATAGCTTGGTACCAACACAAGCCTGGAAAAGGTCCTAGGCTGCTCATATGGTACACATCTACATTACAGCCAGGCATCCCATCAAGGTTCAGTGGAAGTGGGTCTGGGAGAGATTATTCCTTCAGCATCAGCAACCTGGAGCCTGAAGATATTGCAACTTATTACTGTCTACAGTATGATAATCTTCCACC", "aligned_sequence": "GACATCCAGATGACACAGTCTCCATCCTCACTGTCTGCATCTCTGGGAGGCAAAGTCACCATCACTTGCAAGGCAAGCCAAGACATT..................AACAAGAATATAGCTTGGTACCAACACAAGCCTGGAAAAGGTCCTAGGCTGCTCATATGGTACACA.....................TCTACATTACAGCCAGGCATCCCA...TCAAGGTTCAGTGGAAGTGGG......TCTGGGAGAGATTATTCCTTCAGCATCAGCAACCTGGAGCCTGAAGATATTGCAACTTATTACTGTCTACAGTATGATAATCTTCCACC", "fwr1_start": 1, "fwr1_end": 78, "cdr1_start": 79, "cdr1_end": 96, "fwr2_start": 97, "fwr2_end": 147, "cdr2_start": 148, "cdr2_end": 156, "fwr3_start": 157, "fwr3_end": 264, "cdr3_start": 265, "alignment_labels": [ "1", "2", "3", "4", "5", "6", "7", "8", "9", "10", "11", "12", "13", "14", "15", "16", "17", "18", "19", "20", "21", "22", "23", "24", "25", "26", "27", "28", "29", "30", "31", "32", "33", "34", "35", "36", "37", "38", "39", "40", "41", "42", "43", "44", "45", "46", "47", "48", "49", "50", "51", "52", "53", "54", "55", "56", "57", "58", "59", "60", "61", "62", "63", "64", "65", "66", "67", "68", "69", "70", "71", "72", "73", "74", "75", "76", "77", "78", "79", "80", "81", "82", "83", "84", "85", "86", "87", "88", "89", "90", "91", "92", "93", "94", "95", "96", "97", "98", "99", "100", "101", "102", "103", "104" ] } ], "unrearranged_support": [], "rearranged_support": [], "paralogs": null, "curation": null, "curational_tags": null }, { "allele_description_id": "OGRDB:A01674", "allele_description_ref": "OGRDB:Mus musculus/NOD/ShiLtJ_IGK:IGKV-YM5Q.1", "maintainer": "William Lees", "acknowledgements": null, "lab_address": "Birkbeck College, University of London, Malet Street, London", "release_version": 1, "release_date": "03-May-2022", "release_description": "https://www.amazon.co.uk/Metre-Metal-Blocked-Unblocker-Cleaner/dp/B00UNGS08K/ref=sr_1_18?keywords=drain+unblocker&qid=1651577716&sprefix=drain%2Caps%2C68&sr=8-18", "label": "IGKV0-YM5Q*00", "sequence": "GATATTGTGCTAACTCAGTCTCCAGCCACCCTGTCTGTGACTCCAGGAGATAGAGTCAGTCTTTCCTGCAGGGCCAGCCAAAGTATTAGCAACTACCTACACTGGTATCAACAAAAATCACATGAGTCTCCAAGGCTTCTCATCAAGTATGCTTCCCAGTCCATCTCTGGGATCCCCTCCAGGTTCAGTGGCAGTGGATCAGGGACAGATTTCACTCTCAGTATCAACAGTGTGGAGACTGAAGATTTTGGAATGTATTTCTGTCAACAGAGTAACAGCTGGCCTCA", "coding_sequence": "GATATTGTGCTAACTCAGTCTCCAGCCACCCTGTCTGTGACTCCAGGAGATAGAGTCAGTCTTTCCTGCAGGGCCAGCCAAAGTATTAGCAACTACCTACACTGGTATCAACAAAAATCACATGAGTCTCCAAGGCTTCTCATCAAGTATGCTTCCCAGTCCATCTCTGGGATCCCCTCCAGGTTCAGTGGCAGTGGATCAGGGACAGATTTCACTCTCAGTATCAACAGTGTGGAGACTGAAGATTTTGGAATGTATTTCTGTCAACAGAGTAACAGCTGGCCTCA", "ext_3prime": null, "aliases": [ "Kos et al: IGKV5-45*01_S0430_NOD" ], "locus": "IGK", "chromosome": null, "sequence_type": "V", "functional": true, "inference_type": "Rearranged only", "species": { "id": "NCBITAXON:10090", "label": "Mus musculus" }, "species_subgroup": "NOD/ShiLtJ", "species_subgroup_type": "strain", "status": null, "gene_designation": null, "subgroup_designation": null, "allele_designation": null, "allele_similarity_cluster_designation": null, "allele_similarity_cluster_member_id": null, "gene_start": 1, "gene_end": 287, "utr_5_prime_start": null, "utr_5_prime_end": null, "leader_1_start": null, "leader_1_end": null, "leader_2_start": null, "leader_2_end": null, "v_rs_start": null, "v_rs_end": null, "v_gene_delineations": [ { "sequence_delineation_id": "1", "delineation_scheme": "IMGT", "unaligned_sequence": "GATATTGTGCTAACTCAGTCTCCAGCCACCCTGTCTGTGACTCCAGGAGATAGAGTCAGTCTTTCCTGCAGGGCCAGCCAAAGTATTAGCAACTACCTACACTGGTATCAACAAAAATCACATGAGTCTCCAAGGCTTCTCATCAAGTATGCTTCCCAGTCCATCTCTGGGATCCCCTCCAGGTTCAGTGGCAGTGGATCAGGGACAGATTTCACTCTCAGTATCAACAGTGTGGAGACTGAAGATTTTGGAATGTATTTCTGTCAACAGAGTAACAGCTGGCCTCA", "aligned_sequence": "GATATTGTGCTAACTCAGTCTCCAGCCACCCTGTCTGTGACTCCAGGAGATAGAGTCAGTCTTTCCTGCAGGGCCAGCCAAAGTATT..................AGCAACTACCTACACTGGTATCAACAAAAATCACATGAGTCTCCAAGGCTTCTCATCAAGTATGCT.....................TCCCAGTCCATCTCTGGGATCCCC...TCCAGGTTCAGTGGCAGTGGA......TCAGGGACAGATTTCACTCTCAGTATCAACAGTGTGGAGACTGAAGATTTTGGAATGTATTTCTGTCAACAGAGTAACAGCTGGCCTCA", "fwr1_start": 1, "fwr1_end": 78, "cdr1_start": 79, "cdr1_end": 96, "fwr2_start": 97, "fwr2_end": 147, "cdr2_start": 148, "cdr2_end": 156, "fwr3_start": 157, "fwr3_end": 264, "cdr3_start": 265, "alignment_labels": [ "1", "2", "3", "4", "5", "6", "7", "8", "9", "10", "11", "12", "13", "14", "15", "16", "17", "18", "19", "20", "21", "22", "23", "24", "25", "26", "27", "28", "29", "30", "31", "32", "33", "34", "35", "36", "37", "38", "39", "40", "41", "42", "43", "44", "45", "46", "47", "48", "49", "50", "51", "52", "53", "54", "55", "56", "57", "58", "59", "60", "61", "62", "63", "64", "65", "66", "67", "68", "69", "70", "71", "72", "73", "74", "75", "76", "77", "78", "79", "80", "81", "82", "83", "84", "85", "86", "87", "88", "89", "90", "91", "92", "93", "94", "95", "96", "97", "98", "99", "100", "101", "102", "103", "104" ] } ], "unrearranged_support": [], "rearranged_support": [], "paralogs": null, "curation": null, "curational_tags": null }, { "allele_description_id": "OGRDB:A01688", "allele_description_ref": "OGRDB:Mus musculus/NOD/ShiLtJ_IGK:IGKV-Z4L6.1", "maintainer": "William Lees", "acknowledgements": null, "lab_address": "Birkbeck College, University of London, Malet Street, London", "release_version": 1, "release_date": "03-May-2022", "release_description": "https://www.amazon.co.uk/Metre-Metal-Blocked-Unblocker-Cleaner/dp/B00UNGS08K/ref=sr_1_18?keywords=drain+unblocker&qid=1651577716&sprefix=drain%2Caps%2C68&sr=8-18", "label": "IGKV0-Z4L6*00", "sequence": "CAAATTGTTCTCACCCAGTCTCCAGCAATCATGTCTGCATCTCCAGGGGAGAAGGTCACCATGACCTGCAGTGCCAGCTCAAGTGTAAGTTACATGTACTGGTACCAGCAGAAGCCAGGATCCTCCCCCAGACTCTGGATTTATGACACATCCAACCTGGCTTCTGGAGTCCCCGCTCGCTTCAGTGGCAGTAGGTCTGGGACCTCTTATTCTCTCACAATCAGCAGCATGGAGGCTGAAGATGCTGCCACTTATTACTGCCATCAGCGGAGTAGTTACCCATTCA", "coding_sequence": "CAAATTGTTCTCACCCAGTCTCCAGCAATCATGTCTGCATCTCCAGGGGAGAAGGTCACCATGACCTGCAGTGCCAGCTCAAGTGTAAGTTACATGTACTGGTACCAGCAGAAGCCAGGATCCTCCCCCAGACTCTGGATTTATGACACATCCAACCTGGCTTCTGGAGTCCCCGCTCGCTTCAGTGGCAGTAGGTCTGGGACCTCTTATTCTCTCACAATCAGCAGCATGGAGGCTGAAGATGCTGCCACTTATTACTGCCATCAGCGGAGTAGTTACCCATTCA", "ext_3prime": null, "aliases": [ "Kos et al: IGKV4-62*01_S2199_NOD" ], "locus": "IGK", "chromosome": null, "sequence_type": "V", "functional": true, "inference_type": "Rearranged only", "species": { "id": "NCBITAXON:10090", "label": "Mus musculus" }, "species_subgroup": "NOD/ShiLtJ", "species_subgroup_type": "strain", "status": null, "gene_designation": null, "subgroup_designation": null, "allele_designation": null, "allele_similarity_cluster_designation": null, "allele_similarity_cluster_member_id": null, "gene_start": 1, "gene_end": 286, "utr_5_prime_start": null, "utr_5_prime_end": null, "leader_1_start": null, "leader_1_end": null, "leader_2_start": null, "leader_2_end": null, "v_rs_start": null, "v_rs_end": null, "v_gene_delineations": [ { "sequence_delineation_id": "1", "delineation_scheme": "IMGT", "unaligned_sequence": "CAAATTGTTCTCACCCAGTCTCCAGCAATCATGTCTGCATCTCCAGGGGAGAAGGTCACCATGACCTGCAGTGCCAGCTCAAGTGTAAGTTACATGTACTGGTACCAGCAGAAGCCAGGATCCTCCCCCAGACTCTGGATTTATGACACATCCAACCTGGCTTCTGGAGTCCCCGCTCGCTTCAGTGGCAGTAGGTCTGGGACCTCTTATTCTCTCACAATCAGCAGCATGGAGGCTGAAGATGCTGCCACTTATTACTGCCATCAGCGGAGTAGTTACCCATTCA", "aligned_sequence": "CAAATTGTTCTCACCCAGTCTCCAGCAATCATGTCTGCATCTCCAGGGGAGAAGGTCACCATGACCTGCAGTGCCAGCTCAAGTGTA.....................AGTTACATGTACTGGTACCAGCAGAAGCCAGGATCCTCCCCCAGACTCTGGATTTATGACACA.....................TCCAACCTGGCTTCTGGAGTCCCC...GCTCGCTTCAGTGGCAGTAGG......TCTGGGACCTCTTATTCTCTCACAATCAGCAGCATGGAGGCTGAAGATGCTGCCACTTATTACTGCCATCAGCGGAGTAGTTACCCATTCA", "fwr1_start": 1, "fwr1_end": 78, "cdr1_start": 79, "cdr1_end": 93, "fwr2_start": 94, "fwr2_end": 144, "cdr2_start": 145, "cdr2_end": 153, "fwr3_start": 154, "fwr3_end": 261, "cdr3_start": 262, "alignment_labels": [ "1", "2", "3", "4", "5", "6", "7", "8", "9", "10", "11", "12", "13", "14", "15", "16", "17", "18", "19", "20", "21", "22", "23", "24", "25", "26", "27", "28", "29", "30", "31", "32", "33", "34", "35", "36", "37", "38", "39", "40", "41", "42", "43", "44", "45", "46", "47", "48", "49", "50", "51", "52", "53", "54", "55", "56", "57", "58", "59", "60", "61", "62", "63", "64", "65", "66", "67", "68", "69", "70", "71", "72", "73", "74", "75", "76", "77", "78", "79", "80", "81", "82", "83", "84", "85", "86", "87", "88", "89", "90", "91", "92", "93", "94", "95", "96", "97", "98", "99", "100", "101", "102", "103", "104" ] } ], "unrearranged_support": [], "rearranged_support": [], "paralogs": null, "curation": null, "curational_tags": null }, { "allele_description_id": "OGRDB:A01710", "allele_description_ref": "OGRDB:Mus musculus/NOD/ShiLtJ_IGK:IGKV-Z4M5.1", "maintainer": "William Lees", "acknowledgements": null, "lab_address": "Birkbeck College, University of London, Malet Street, London", "release_version": 1, "release_date": "03-May-2022", "release_description": "https://www.amazon.co.uk/Metre-Metal-Blocked-Unblocker-Cleaner/dp/B00UNGS08K/ref=sr_1_18?keywords=drain+unblocker&qid=1651577716&sprefix=drain%2Caps%2C68&sr=8-18", "label": "IGKV0-Z4M5*00", "sequence": "GAAATTGTGTTGACACAGTCTATACCATCCCTGACTGTGTCAGCAGGAGAGAGGGTCACTATCAGCTGCAAATCCAATCAGAATCTTTTATGGAGTGGAAACCAACGGTACTGTTTGGTCTGGCACCAGTGGAAACCAGGGCAAACTCCTACACCGTTGATCACCTGGACATCTGATAGGTACTCTGGAGTCCCTGATCGTTTCATAGGCAGTGGATCTGTGACAGATTTCACTCTGACCATCAGCAGTGTGCAGGATGAAGATGTGGCAGTTTATTTCTGTCAGCAGCATTTACACATTCCTC", "coding_sequence": "GAAATTGTGTTGACACAGTCTATACCATCCCTGACTGTGTCAGCAGGAGAGAGGGTCACTATCAGCTGCAAATCCAATCAGAATCTTTTATGGAGTGGAAACCAACGGTACTGTTTGGTCTGGCACCAGTGGAAACCAGGGCAAACTCCTACACCGTTGATCACCTGGACATCTGATAGGTACTCTGGAGTCCCTGATCGTTTCATAGGCAGTGGATCTGTGACAGATTTCACTCTGACCATCAGCAGTGTGCAGGATGAAGATGTGGCAGTTTATTTCTGTCAGCAGCATTTACACATTCCTC", "ext_3prime": null, "aliases": [ "Kos et al: IGKV8-16*01_S4105_NOD" ], "locus": "IGK", "chromosome": null, "sequence_type": "V", "functional": true, "inference_type": "Rearranged only", "species": { "id": "NCBITAXON:10090", "label": "Mus musculus" }, "species_subgroup": "NOD/ShiLtJ", "species_subgroup_type": "strain", "status": null, "gene_designation": null, "subgroup_designation": null, "allele_designation": null, "allele_similarity_cluster_designation": null, "allele_similarity_cluster_member_id": null, "gene_start": 1, "gene_end": 304, "utr_5_prime_start": null, "utr_5_prime_end": null, "leader_1_start": null, "leader_1_end": null, "leader_2_start": null, "leader_2_end": null, "v_rs_start": null, "v_rs_end": null, "v_gene_delineations": [ { "sequence_delineation_id": "1", "delineation_scheme": "IMGT", "unaligned_sequence": "GAAATTGTGTTGACACAGTCTATACCATCCCTGACTGTGTCAGCAGGAGAGAGGGTCACTATCAGCTGCAAATCCAATCAGAATCTTTTATGGAGTGGAAACCAACGGTACTGTTTGGTCTGGCACCAGTGGAAACCAGGGCAAACTCCTACACCGTTGATCACCTGGACATCTGATAGGTACTCTGGAGTCCCTGATCGTTTCATAGGCAGTGGATCTGTGACAGATTTCACTCTGACCATCAGCAGTGTGCAGGATGAAGATGTGGCAGTTTATTTCTGTCAGCAGCATTTACACATTCCTC", "aligned_sequence": "GAAATTGTGTTGACACAGTCTATACCATCCCTGACTGTGTCAGCAGGAGAGAGGGTCACTATCAGCTGCAAATCCAATCAGAATCTTTTATGGAGTGGAAACCAACGGTACTGTTTGGTCTGGCACCAGTGGAAACCAGGGCAAACTCCTACACCGTTGATCACCTGGACA.....................TCTGATAGGTACTCTGGAGTCCCT...GATCGTTTCATAGGCAGTGGA......TCTGTGACAGATTTCACTCTGACCATCAGCAGTGTGCAGGATGAAGATGTGGCAGTTTATTTCTGTCAGCAGCATTTACACATTCCTC", "fwr1_start": 1, "fwr1_end": 78, "cdr1_start": 79, "cdr1_end": 114, "fwr2_start": 115, "fwr2_end": 165, "cdr2_start": 166, "cdr2_end": 174, "fwr3_start": 175, "fwr3_end": 282, "cdr3_start": 283, "alignment_labels": [ "1", "2", "3", "4", "5", "6", "7", "8", "9", "10", "11", "12", "13", "14", "15", "16", "17", "18", "19", "20", "21", "22", "23", "24", "25", "26", "27", "28", "29", "30", "31", "32", "33", "34", "35", "36", "37", "38", "39", "40", "41", "42", "43", "44", "45", "46", "47", "48", "49", "50", "51", "52", "53", "54", "55", "56", "57", "58", "59", "60", "61", "62", "63", "64", "65", "66", "67", "68", "69", "70", "71", "72", "73", "74", "75", "76", "77", "78", "79", "80", "81", "82", "83", "84", "85", "86", "87", "88", "89", "90", "91", "92", "93", "94", "95", "96", "97", "98", "99", "100", "101", "102", "103", "104" ] } ], "unrearranged_support": [], "rearranged_support": [], "paralogs": null, "curation": null, "curational_tags": null }, { "allele_description_id": "OGRDB:A01672", "allele_description_ref": "OGRDB:Mus musculus/NOD/ShiLtJ_IGK:IGKV-ZIDM.1", "maintainer": "William Lees", "acknowledgements": null, "lab_address": "Birkbeck College, University of London, Malet Street, London", "release_version": 1, "release_date": "03-May-2022", "release_description": "https://www.amazon.co.uk/Metre-Metal-Blocked-Unblocker-Cleaner/dp/B00UNGS08K/ref=sr_1_18?keywords=drain+unblocker&qid=1651577716&sprefix=drain%2Caps%2C68&sr=8-18", "label": "IGKV0-ZIDM*00", "sequence": "AGTATTGTGATGACCCAGACTCCCAAATTCCTGCCTGTATCAGCAGGAGACAGGGTTACCATGACCTGCAAGGCCAGTCAGAGTGTGGGTAATAATGTAGCCTGGTACCAACAGAAGCCAGGACAGTCTCCTAAACTGCTGATATACTATGCATCCAATCGCTACACTGGAGTCCCTGATCGCTTCACTGGCAGTGGATCTGGGACAGATTTCACTTTCACCATCAGCAGTGTGCAGGTTGAAGACCTGGCAGTTTATTTCTGTCAGCAGCATTATAGCTCTCCTCC", "coding_sequence": "AGTATTGTGATGACCCAGACTCCCAAATTCCTGCCTGTATCAGCAGGAGACAGGGTTACCATGACCTGCAAGGCCAGTCAGAGTGTGGGTAATAATGTAGCCTGGTACCAACAGAAGCCAGGACAGTCTCCTAAACTGCTGATATACTATGCATCCAATCGCTACACTGGAGTCCCTGATCGCTTCACTGGCAGTGGATCTGGGACAGATTTCACTTTCACCATCAGCAGTGTGCAGGTTGAAGACCTGGCAGTTTATTTCTGTCAGCAGCATTATAGCTCTCCTCC", "ext_3prime": null, "aliases": [ "Kos et al: IGKV6-b*01_NOD" ], "locus": "IGK", "chromosome": null, "sequence_type": "V", "functional": true, "inference_type": "Rearranged only", "species": { "id": "NCBITAXON:10090", "label": "Mus musculus" }, "species_subgroup": "NOD/ShiLtJ", "species_subgroup_type": "strain", "status": null, "gene_designation": null, "subgroup_designation": null, "allele_designation": null, "allele_similarity_cluster_designation": null, "allele_similarity_cluster_member_id": null, "gene_start": 1, "gene_end": 287, "utr_5_prime_start": null, "utr_5_prime_end": null, "leader_1_start": null, "leader_1_end": null, "leader_2_start": null, "leader_2_end": null, "v_rs_start": null, "v_rs_end": null, "v_gene_delineations": [ { "sequence_delineation_id": "1", "delineation_scheme": "IMGT", "unaligned_sequence": "AGTATTGTGATGACCCAGACTCCCAAATTCCTGCCTGTATCAGCAGGAGACAGGGTTACCATGACCTGCAAGGCCAGTCAGAGTGTGGGTAATAATGTAGCCTGGTACCAACAGAAGCCAGGACAGTCTCCTAAACTGCTGATATACTATGCATCCAATCGCTACACTGGAGTCCCTGATCGCTTCACTGGCAGTGGATCTGGGACAGATTTCACTTTCACCATCAGCAGTGTGCAGGTTGAAGACCTGGCAGTTTATTTCTGTCAGCAGCATTATAGCTCTCCTCC", "aligned_sequence": "AGTATTGTGATGACCCAGACTCCCAAATTCCTGCCTGTATCAGCAGGAGACAGGGTTACCATGACCTGCAAGGCCAGTCAGAGTGTG..................GGTAATAATGTAGCCTGGTACCAACAGAAGCCAGGACAGTCTCCTAAACTGCTGATATACTATGCA.....................TCCAATCGCTACACTGGAGTCCCT...GATCGCTTCACTGGCAGTGGA......TCTGGGACAGATTTCACTTTCACCATCAGCAGTGTGCAGGTTGAAGACCTGGCAGTTTATTTCTGTCAGCAGCATTATAGCTCTCCTCC", "fwr1_start": 1, "fwr1_end": 78, "cdr1_start": 79, "cdr1_end": 96, "fwr2_start": 97, "fwr2_end": 147, "cdr2_start": 148, "cdr2_end": 156, "fwr3_start": 157, "fwr3_end": 264, "cdr3_start": 265, "alignment_labels": [ "1", "2", "3", "4", "5", "6", "7", "8", "9", "10", "11", "12", "13", "14", "15", "16", "17", "18", "19", "20", "21", "22", "23", "24", "25", "26", "27", "28", "29", "30", "31", "32", "33", "34", "35", "36", "37", "38", "39", "40", "41", "42", "43", "44", "45", "46", "47", "48", "49", "50", "51", "52", "53", "54", "55", "56", "57", "58", "59", "60", "61", "62", "63", "64", "65", "66", "67", "68", "69", "70", "71", "72", "73", "74", "75", "76", "77", "78", "79", "80", "81", "82", "83", "84", "85", "86", "87", "88", "89", "90", "91", "92", "93", "94", "95", "96", "97", "98", "99", "100", "101", "102", "103", "104" ] } ], "unrearranged_support": [], "rearranged_support": [], "paralogs": null, "curation": null, "curational_tags": null } ], "curation": "The germline set is based on sequences published in Kos et al. (2022) (in preparation)" } ] }