Notes

The germline set is based on sequences published in Kos et al. (2022) (in preparation)

Details

AuthorJustin Kos
Lab NameUniversity of Louisville School of Medicine
Lab AddressUniversity of Louisville, Louisville, KY 40202, USA
NameCAST/EiJ IGLV
SpeciesMus musculus
Species subgroupCAST/EiJ
Subgroup typestrain
LocusIGL
Release Version1
Release DescriptionIGLV sequences as described in Kos et al. (2022)
Release Date2022-05-03
doi10.5281/zenodo.7116843

Included Sequences

The download in Excel or CSV format includes sequences, flanking regions and additional detail.

LabelVnDateIMGT NameAlt NamesFunctionalitySubgrpGenomic AccessionsInferencel_part1l_part2v_heptamerv_nonamerj_heptamerj_nonamerd_3_heptamerd_3_nonamerd_5_heptamerd_5_nonamer3' Ext5' ExtSequenceGapped Sequence
IGLV-C4ZJ 12022-05-03Kos et al: IGLV1*01_CAST_2FCAST/EiJRearrangedCAGGCTGTTGTGACTCAGGAGTCTGTTCTCACCACATCACCTGGTGGTACAGTCATAATCACTTGTCGCTCAAGTACTGGGGCTGTTACAACTAGTAACTATGCCATTTGGGTCCAAGAAAAAGCAGATCATTTATTCGCTGGTGTAATAGGTGATACAAGCAACCGAGCTCCAGGTGTTCCTGCCAGATTCTCAGGCTCCTTGATTGGAGACAAGGCTGCCCTCACCATCACAGGGGCACAGACTGAGGATGAGGCAATATATTTCTGTGCTCTATGGTACAGCAACCATTTCCAGGCTGTTGTGACTCAGGAGTCTGTT...CTCACCACATCACCTGGTGGTACAGTCATAATCACTTGTCGCTCAAGTACTGGGGCTGTTACA.........ACTAGTAACTATGCCATTTGGGTCCAAGAAAAAGCAGATCATTTATTCGCTGGTGTAATAGGTGATACA.....................AGCAACCGAGCTCCAGGTGTTCCT...GCCAGATTCTCAGGCTCCTTG......ATTGGAGACAAGGCTGCCCTCACCATCACAGGGGCACAGACTGAGGATGAGGCAATATATTTCTGTGCTCTATGGTACAGCAACCATTTC
IGLV-CMGQ 12022-05-03Kos et al: IGLV3*01_CASTFCAST/EiJRearrangedCAACCTGTGCTCACTCAGTCATCTTCAGCCTCTTTCTCCCTGGGAGCCTCAGCAAAACTCACATGCACCTTGAGTAGTGAGCACAGTACGTACATCATTGAATGGTACCAGCAACAGCCACTCAAGCCTCCTAAGTATGTGATGCAGCTTAAGAAAGATGGAAGCCACAGCAAGGGTGATGGAATCCCTGATCGCTTCTCTGGATCCAGCTCTGGTGCTGACCGCTACCTTAGCATCTCCAACATCCAGCCTGAAGATGAAGCAATATACATCTGTGGTGTGAGTGGAACAATTAAGGAACAATTCGTGTAACCAACCTGTGCTCACTCAGTCATCTTCA...GCCTCTTTCTCCCTGGGAGCCTCAGCAAAACTCACATGCACCTTGAGTAGTGAGCACAGT...............ACGTACATCATTGAATGGTACCAGCAACAGCCACTCAAGCCTCCTAAGTATGTGATGCAGCTTAAGAAAGAT.........GGAAGCCACAGCAAGGGTGATGGAATCCCT...GATCGCTTCTCTGGATCCAGC......TCTGGTGCTGACCGCTACCTTAGCATCTCCAACATCCAGCCTGAAGATGAAGCAATATACATCTGTGGTGTGAGTGGAACAATTAAGGAACAATTCGTGTAAC
IGLV-DUHW 12022-05-03Musmus IGLV7*01 [F]Kos et al: IGLV7*01_CASTFCAST/EiJRearrangedTTACTCAGCCAAGCTCTGTGTCTACGTCTCTAGGAAGCACAGTCAAACTGTCTTGCAAGCCCAGCACTGGTAAAATTGGAAATTACTTTATGAGCTGGTACCAGCAACACATGGGAAGATCTCCCACAAATATGATCTATAGAGATGATCTCCGACCATCTGGAGTTTCTGATAGGTTCTCTGGCTCCATTGACAGCTCTTCCAACTCAGCCTTCCTGACAATCAATAATGTGCAGGCTGAGGATTTACTCAGCCAAGCTCTGTGTCTACGT...CTCTAGGAAGCACAGTCAAACTGTCTTGCAAGCCCAGCACTGGTAAAATTGGAAATTACT............TTATGAGCTGGTACCAGCAACACATGGGAAGATCTCCCACAAATATGATCTATAGAGATGATCTCCGAC.....................CATCTGGAGTTTCTGATAGGTTCT...CTGGCTCCATTGACAGCTCTTCCAACTCAGCCTTCCTGACAATCAATAATGTGCAGGCTGAGGAT
IGLV-EYCQ 12022-05-03Kos et al: IGLV6*01_CASTFCAST/EiJRearrangedTTACTCAGCCAAGCTCTGTGTCTACATCTCTAGGAAGCACAGTCAAACTGCCTTGCAAGCGCAGCACTGATAATATTGGAAGCTACTATGTGCATTGGTACCAGCAACATATGGGAAGATCTCCTACCAATATGATCCATAGTGATGATCAGCGACCATCTGGAGTTTCTGATAGGTTCTCTGGCTCCATTGACAGCTCTTCCAACTCAGCCTTCCTGACAATCAATAATGTTCAGGCTGAGGATTTACTCAGCCAAGCTCTGTGTCTACAT...CTCTAGGAAGCACAGTCAAACTGCCTTGCAAGCGCAGCACTGATAATATTGGAAGCTACT............ATGTGCATTGGTACCAGCAACATATGGGAAGATCTCCTACCAATATGATCCATAGTGATGATCAGCGAC.....................CATCTGGAGTTTCTGATAGGTTCT...CTGGCTCCATTGACAGCTCTTCCAACTCAGCCTTCCTGACAATCAATAATGTTCAGGCTGAGGAT
IGLV-JEYS 12022-05-03Musmus IGLV8*01 [F]Kos et al: IGLV8*01_CASTFCAST/EiJRearrangedTTACTCAGCCAAGCTCTGTGTCTACGTCTCTAGGAAGCACAGTCAAACTGCCTTGCAAGCGCAGCACTGGTAACATTGGAAACGACTATGTGCACTGGTACCAGCAACACATGGGAAGATCTCCCACCAATATGATCTATAGAGATGATCAGCGACCATCTGGAGTTTCTGATAGGTTCTCTGGCTCCATTGACAGCTCTTCCAACTCAGCCTTCCTGACAATCAATAATGTGCAGGCTGAGGATTTACTCAGCCAAGCTCTGTGTCTACGT...CTCTAGGAAGCACAGTCAAACTGCCTTGCAAGCGCAGCACTGGTAACATTGGAAACGACT............ATGTGCACTGGTACCAGCAACACATGGGAAGATCTCCCACCAATATGATCTATAGAGATGATCAGCGAC.....................CATCTGGAGTTTCTGATAGGTTCT...CTGGCTCCATTGACAGCTCTTCCAACTCAGCCTTCCTGACAATCAATAATGTGCAGGCTGAGGAT
IGLV-JK7T 12022-05-03Kos et al: IGLV2*02_CASTFCAST/EiJRearrangedCAGGCTGTTGTGACTCAGGAATCTGCACTCACCACATCACCTGGTGGAACAGTCATACTCACTTGTCGCTCAAGTACTGGGGCTGTTACAACTAGTAACTATGCCAACTGGGTCCAAGAAAAACCAGATCATTTATTCACTGGTCTAATAGGTGGTACCAGCAACCGAGCTCCAGGTGTTCCAGTCAGATTCTCAGGCTCCCTGATTGGAGACAAGGCTGCCCTCACCATCACAGGGGCACAGACTGAGGATGATGCAATGTATTTCTGTGCTCTATGGTACAGCACCCATTTCCAGGCTGTTGTGACTCAGGAATCTGCA...CTCACCACATCACCTGGTGGAACAGTCATACTCACTTGTCGCTCAAGTACTGGGGCTGTTACA.........ACTAGTAACTATGCCAACTGGGTCCAAGAAAAACCAGATCATTTATTCACTGGTCTAATAGGTGGTACC.....................AGCAACCGAGCTCCAGGTGTTCCA...GTCAGATTCTCAGGCTCCCTG......ATTGGAGACAAGGCTGCCCTCACCATCACAGGGGCACAGACTGAGGATGATGCAATGTATTTCTGTGCTCTATGGTACAGCACCCATTTC
IGLV-RQWY 12022-05-03Kos et al: IGLV5*01_CASTFCAST/EiJRearrangedTTACTCAGCCAAGCTCTGTGTCTACGTCTCTAGGAAGCACAGCCAAACTGCCTTGCAAGGCCAGCACTGGTAACATTGGAGACAGCTATGTGAACTGGTACCAGCAGTACATGGGAAGATCTCCCACTAATATAATCTATGGAGATGATCTCCGACCATCTGGAGTTTCTGATAGGTTCTCTGGCTCCATTGACAGCTCTTCCAACTCAGCCTTCCTGACAATCCAAAATGTGCAGGCTGATGATTTACTCAGCCAAGCTCTGTGTCTACGT...CTCTAGGAAGCACAGCCAAACTGCCTTGCAAGGCCAGCACTGGTAACATTGGAGACAGCT............ATGTGAACTGGTACCAGCAGTACATGGGAAGATCTCCCACTAATATAATCTATGGAGATGATCTCCGAC.....................CATCTGGAGTTTCTGATAGGTTCT...CTGGCTCCATTGACAGCTCTTCCAACTCAGCCTTCCTGACAATCCAAAATGTGCAGGCTGATGAT
IGLV-RRBE 12022-05-03Kos et al: IGLV1*01_CASTFCAST/EiJRearrangedCAGGCTGTCGTGACTCAGGAATCTGCACTCACCACATCACCTGGTGAAACAGTCACACTCACTTGTCGCTCAAGTACTGGGGCTGTTACAACTAGTAACTATGCCAACTGGGTCCAAGAAAAAACAGACCATTTATTCACTGGTCTAATAGGTGGTACCAACAACCGAGCTCCAGGTGTTCCTGTCAGATTCTCAGGCTCCCTGATTGGAGACAAGGCTGCCCTCACCATCACAGGGGCACAGACTGAGGATGATGCAATGTATTTCTGTGCTCTATGGTACAGCAACCATTTCCAGGCTGTCGTGACTCAGGAATCTGCA...CTCACCACATCACCTGGTGAAACAGTCACACTCACTTGTCGCTCAAGTACTGGGGCTGTTACA.........ACTAGTAACTATGCCAACTGGGTCCAAGAAAAAACAGACCATTTATTCACTGGTCTAATAGGTGGTACC.....................AACAACCGAGCTCCAGGTGTTCCT...GTCAGATTCTCAGGCTCCCTG......ATTGGAGACAAGGCTGCCCTCACCATCACAGGGGCACAGACTGAGGATGATGCAATGTATTTCTGTGCTCTATGGTACAGCAACCATTTC
IGLV-ZQBR 12022-05-03Musmus IGLV4*01 [F]Kos et al: IGLV4*01_CASTFCAST/EiJRearrangedTTACTCAGCCAAGCTCTGTGTCTACGTCTCTAGGAAGCACAGTCAAACTGTCTTGCAAGCGCAGCACTGGTAACATTGGAAACAACTATGTGCACTGGTACCAGCAGTACATGGGAAGATCTCCCACCAATATGATCTATGATGATAATAAGCGACCATCTGGAGTTTCTGATAGGTTCTCTGGCTCCATTGACAGCTCTTCCAACTCAGCCTTCCTGACAATCAATAATGTGCAGGCTGAGGATTTACTCAGCCAAGCTCTGTGTCTACGT...CTCTAGGAAGCACAGTCAAACTGTCTTGCAAGCGCAGCACTGGTAACATTGGAAACAACT............ATGTGCACTGGTACCAGCAGTACATGGGAAGATCTCCCACCAATATGATCTATGATGATAATAAGCGAC.....................CATCTGGAGTTTCTGATAGGTTCT...CTGGCTCCATTGACAGCTCTTCCAACTCAGCCTTCCTGACAATCAATAATGTGCAGGCTGAGGAT

Acknowledgements

Individuals acknowledged as contributing to this sequence:

No Items

History

History logs the times and reasons for the publication of each version of this germline set. Key changes are noted. For detailed changes, click on the link to the sequence.

William Lees
2022-04-25 10:46:07
Mouse germline set G00013 (CAST/EiJ IGLV) created

Mouse germline set G00013 (CAST/EiJ IGLV) created

William Lees
2022-05-03 11:19:53
Version 1 published

This version as published in preprint at https://www.biorxiv.org/content/10.1101/2022.05.01.489089v1

Versions

All published versions of this germline set.

Set NameSpeciesSpecies subgroupLocusRelease VersionRelease Datedoi
CAST/EiJ IGLVMus musculusCAST/EiJIGL12022-05-0310.5281/zenodo.7116843