Germline Set CAST/EiJ IGLV
Notes
The germline set is based on sequences published in Kos et al. (2022) (in preparation)
Details
| Author | Justin Kos |
| Lab Name | University of Louisville School of Medicine |
| Lab Address | University of Louisville, Louisville, KY 40202, USA |
| Name | CAST/EiJ IGLV |
| Species | Mus musculus |
| Species subgroup | CAST/EiJ |
| Subgroup type | strain |
| Locus | IGL |
| Release Version | 1 |
| Release Description | IGLV sequences as described in Kos et al. (2022) |
| Release Date | 2022-05-03 |
| doi | 10.5281/zenodo.7116843 |
Included Sequences
The download in Excel or CSV format includes sequences, flanking regions and additional detail.
| Label | Vn | Date | IMGT Name | Alt Names | Functionality | Subgrp | Genomic Accessions | Inference | l_part1 | l_part2 | v_heptamer | v_nonamer | j_heptamer | j_nonamer | d_3_heptamer | d_3_nonamer | d_5_heptamer | d_5_nonamer | 3' Ext | 5' Ext | Sequence | Gapped Sequence |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| IGLV-C4ZJ | 1 | 2022-05-03 | Kos et al: IGLV1*01_CAST_2 | F | CAST/EiJ | Rearranged Only | CAGGCTGTTGTGACTCAGGAGTCTGTTCTCACCACATCACCTGGTGGTACAGTCATAATCACTTGTCGCTCAAGTACTGGGGCTGTTACAACTAGTAACTATGCCATTTGGGTCCAAGAAAAAGCAGATCATTTATTCGCTGGTGTAATAGGTGATACAAGCAACCGAGCTCCAGGTGTTCCTGCCAGATTCTCAGGCTCCTTGATTGGAGACAAGGCTGCCCTCACCATCACAGGGGCACAGACTGAGGATGAGGCAATATATTTCTGTGCTCTATGGTACAGCAACCATTTC | CAGGCTGTTGTGACTCAGGAGTCTGTT...CTCACCACATCACCTGGTGGTACAGTCATAATCACTTGTCGCTCAAGTACTGGGGCTGTTACA.........ACTAGTAACTATGCCATTTGGGTCCAAGAAAAAGCAGATCATTTATTCGCTGGTGTAATAGGTGATACA.....................AGCAACCGAGCTCCAGGTGTTCCT...GCCAGATTCTCAGGCTCCTTG......ATTGGAGACAAGGCTGCCCTCACCATCACAGGGGCACAGACTGAGGATGAGGCAATATATTTCTGTGCTCTATGGTACAGCAACCATTTC | ||||||||||||||
| IGLV-CMGQ | 1 | 2022-05-03 | Kos et al: IGLV3*01_CAST | F | CAST/EiJ | Rearranged Only | CAACCTGTGCTCACTCAGTCATCTTCAGCCTCTTTCTCCCTGGGAGCCTCAGCAAAACTCACATGCACCTTGAGTAGTGAGCACAGTACGTACATCATTGAATGGTACCAGCAACAGCCACTCAAGCCTCCTAAGTATGTGATGCAGCTTAAGAAAGATGGAAGCCACAGCAAGGGTGATGGAATCCCTGATCGCTTCTCTGGATCCAGCTCTGGTGCTGACCGCTACCTTAGCATCTCCAACATCCAGCCTGAAGATGAAGCAATATACATCTGTGGTGTGAGTGGAACAATTAAGGAACAATTCGTGTAAC | CAACCTGTGCTCACTCAGTCATCTTCA...GCCTCTTTCTCCCTGGGAGCCTCAGCAAAACTCACATGCACCTTGAGTAGTGAGCACAGT...............ACGTACATCATTGAATGGTACCAGCAACAGCCACTCAAGCCTCCTAAGTATGTGATGCAGCTTAAGAAAGAT.........GGAAGCCACAGCAAGGGTGATGGAATCCCT...GATCGCTTCTCTGGATCCAGC......TCTGGTGCTGACCGCTACCTTAGCATCTCCAACATCCAGCCTGAAGATGAAGCAATATACATCTGTGGTGTGAGTGGAACAATTAAGGAACAATTCGTGTAAC | ||||||||||||||
| IGLV-DUHW | 1 | 2022-05-03 | Musmus IGLV7*01 [F] | Kos et al: IGLV7*01_CAST | F | CAST/EiJ | Rearranged Only | TTACTCAGCCAAGCTCTGTGTCTACGTCTCTAGGAAGCACAGTCAAACTGTCTTGCAAGCCCAGCACTGGTAAAATTGGAAATTACTTTATGAGCTGGTACCAGCAACACATGGGAAGATCTCCCACAAATATGATCTATAGAGATGATCTCCGACCATCTGGAGTTTCTGATAGGTTCTCTGGCTCCATTGACAGCTCTTCCAACTCAGCCTTCCTGACAATCAATAATGTGCAGGCTGAGGAT | TTACTCAGCCAAGCTCTGTGTCTACGT...CTCTAGGAAGCACAGTCAAACTGTCTTGCAAGCCCAGCACTGGTAAAATTGGAAATTACT............TTATGAGCTGGTACCAGCAACACATGGGAAGATCTCCCACAAATATGATCTATAGAGATGATCTCCGAC.....................CATCTGGAGTTTCTGATAGGTTCT...CTGGCTCCATTGACAGCTCTTCCAACTCAGCCTTCCTGACAATCAATAATGTGCAGGCTGAGGAT | |||||||||||||
| IGLV-EYCQ | 1 | 2022-05-03 | Kos et al: IGLV6*01_CAST | F | CAST/EiJ | Rearranged Only | TTACTCAGCCAAGCTCTGTGTCTACATCTCTAGGAAGCACAGTCAAACTGCCTTGCAAGCGCAGCACTGATAATATTGGAAGCTACTATGTGCATTGGTACCAGCAACATATGGGAAGATCTCCTACCAATATGATCCATAGTGATGATCAGCGACCATCTGGAGTTTCTGATAGGTTCTCTGGCTCCATTGACAGCTCTTCCAACTCAGCCTTCCTGACAATCAATAATGTTCAGGCTGAGGAT | TTACTCAGCCAAGCTCTGTGTCTACAT...CTCTAGGAAGCACAGTCAAACTGCCTTGCAAGCGCAGCACTGATAATATTGGAAGCTACT............ATGTGCATTGGTACCAGCAACATATGGGAAGATCTCCTACCAATATGATCCATAGTGATGATCAGCGAC.....................CATCTGGAGTTTCTGATAGGTTCT...CTGGCTCCATTGACAGCTCTTCCAACTCAGCCTTCCTGACAATCAATAATGTTCAGGCTGAGGAT | ||||||||||||||
| IGLV-JEYS | 1 | 2022-05-03 | Musmus IGLV8*01 [F] | Kos et al: IGLV8*01_CAST | F | CAST/EiJ | Rearranged Only | TTACTCAGCCAAGCTCTGTGTCTACGTCTCTAGGAAGCACAGTCAAACTGCCTTGCAAGCGCAGCACTGGTAACATTGGAAACGACTATGTGCACTGGTACCAGCAACACATGGGAAGATCTCCCACCAATATGATCTATAGAGATGATCAGCGACCATCTGGAGTTTCTGATAGGTTCTCTGGCTCCATTGACAGCTCTTCCAACTCAGCCTTCCTGACAATCAATAATGTGCAGGCTGAGGAT | TTACTCAGCCAAGCTCTGTGTCTACGT...CTCTAGGAAGCACAGTCAAACTGCCTTGCAAGCGCAGCACTGGTAACATTGGAAACGACT............ATGTGCACTGGTACCAGCAACACATGGGAAGATCTCCCACCAATATGATCTATAGAGATGATCAGCGAC.....................CATCTGGAGTTTCTGATAGGTTCT...CTGGCTCCATTGACAGCTCTTCCAACTCAGCCTTCCTGACAATCAATAATGTGCAGGCTGAGGAT | |||||||||||||
| IGLV-JK7T | 1 | 2022-05-03 | Kos et al: IGLV2*02_CAST | F | CAST/EiJ | Rearranged Only | CAGGCTGTTGTGACTCAGGAATCTGCACTCACCACATCACCTGGTGGAACAGTCATACTCACTTGTCGCTCAAGTACTGGGGCTGTTACAACTAGTAACTATGCCAACTGGGTCCAAGAAAAACCAGATCATTTATTCACTGGTCTAATAGGTGGTACCAGCAACCGAGCTCCAGGTGTTCCAGTCAGATTCTCAGGCTCCCTGATTGGAGACAAGGCTGCCCTCACCATCACAGGGGCACAGACTGAGGATGATGCAATGTATTTCTGTGCTCTATGGTACAGCACCCATTTC | CAGGCTGTTGTGACTCAGGAATCTGCA...CTCACCACATCACCTGGTGGAACAGTCATACTCACTTGTCGCTCAAGTACTGGGGCTGTTACA.........ACTAGTAACTATGCCAACTGGGTCCAAGAAAAACCAGATCATTTATTCACTGGTCTAATAGGTGGTACC.....................AGCAACCGAGCTCCAGGTGTTCCA...GTCAGATTCTCAGGCTCCCTG......ATTGGAGACAAGGCTGCCCTCACCATCACAGGGGCACAGACTGAGGATGATGCAATGTATTTCTGTGCTCTATGGTACAGCACCCATTTC | ||||||||||||||
| IGLV-RQWY | 1 | 2022-05-03 | Kos et al: IGLV5*01_CAST | F | CAST/EiJ | Rearranged Only | TTACTCAGCCAAGCTCTGTGTCTACGTCTCTAGGAAGCACAGCCAAACTGCCTTGCAAGGCCAGCACTGGTAACATTGGAGACAGCTATGTGAACTGGTACCAGCAGTACATGGGAAGATCTCCCACTAATATAATCTATGGAGATGATCTCCGACCATCTGGAGTTTCTGATAGGTTCTCTGGCTCCATTGACAGCTCTTCCAACTCAGCCTTCCTGACAATCCAAAATGTGCAGGCTGATGAT | TTACTCAGCCAAGCTCTGTGTCTACGT...CTCTAGGAAGCACAGCCAAACTGCCTTGCAAGGCCAGCACTGGTAACATTGGAGACAGCT............ATGTGAACTGGTACCAGCAGTACATGGGAAGATCTCCCACTAATATAATCTATGGAGATGATCTCCGAC.....................CATCTGGAGTTTCTGATAGGTTCT...CTGGCTCCATTGACAGCTCTTCCAACTCAGCCTTCCTGACAATCCAAAATGTGCAGGCTGATGAT | ||||||||||||||
| IGLV-RRBE | 1 | 2022-05-03 | Kos et al: IGLV1*01_CAST | F | CAST/EiJ | Rearranged Only | CAGGCTGTCGTGACTCAGGAATCTGCACTCACCACATCACCTGGTGAAACAGTCACACTCACTTGTCGCTCAAGTACTGGGGCTGTTACAACTAGTAACTATGCCAACTGGGTCCAAGAAAAAACAGACCATTTATTCACTGGTCTAATAGGTGGTACCAACAACCGAGCTCCAGGTGTTCCTGTCAGATTCTCAGGCTCCCTGATTGGAGACAAGGCTGCCCTCACCATCACAGGGGCACAGACTGAGGATGATGCAATGTATTTCTGTGCTCTATGGTACAGCAACCATTTC | CAGGCTGTCGTGACTCAGGAATCTGCA...CTCACCACATCACCTGGTGAAACAGTCACACTCACTTGTCGCTCAAGTACTGGGGCTGTTACA.........ACTAGTAACTATGCCAACTGGGTCCAAGAAAAAACAGACCATTTATTCACTGGTCTAATAGGTGGTACC.....................AACAACCGAGCTCCAGGTGTTCCT...GTCAGATTCTCAGGCTCCCTG......ATTGGAGACAAGGCTGCCCTCACCATCACAGGGGCACAGACTGAGGATGATGCAATGTATTTCTGTGCTCTATGGTACAGCAACCATTTC | ||||||||||||||
| IGLV-ZQBR | 1 | 2022-05-03 | Musmus IGLV4*01 [F] | Kos et al: IGLV4*01_CAST | F | CAST/EiJ | Rearranged Only | TTACTCAGCCAAGCTCTGTGTCTACGTCTCTAGGAAGCACAGTCAAACTGTCTTGCAAGCGCAGCACTGGTAACATTGGAAACAACTATGTGCACTGGTACCAGCAGTACATGGGAAGATCTCCCACCAATATGATCTATGATGATAATAAGCGACCATCTGGAGTTTCTGATAGGTTCTCTGGCTCCATTGACAGCTCTTCCAACTCAGCCTTCCTGACAATCAATAATGTGCAGGCTGAGGAT | TTACTCAGCCAAGCTCTGTGTCTACGT...CTCTAGGAAGCACAGTCAAACTGTCTTGCAAGCGCAGCACTGGTAACATTGGAAACAACT............ATGTGCACTGGTACCAGCAGTACATGGGAAGATCTCCCACCAATATGATCTATGATGATAATAAGCGAC.....................CATCTGGAGTTTCTGATAGGTTCT...CTGGCTCCATTGACAGCTCTTCCAACTCAGCCTTCCTGACAATCAATAATGTGCAGGCTGAGGAT |
Acknowledgements
Individuals acknowledged as contributing to this sequence:
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History
History logs the times and reasons for the publication of each version of this germline set. Key changes are noted. For detailed changes, click on the link to the sequence.
| William Lees 2022-04-25 10:46:07 | Mouse germline set G00013 (CAST/EiJ IGLV) created Mouse germline set G00013 (CAST/EiJ IGLV) created |
| William Lees 2022-05-03 11:19:53 | Version 1 published This version as published in preprint at https://www.biorxiv.org/content/10.1101/2022.05.01.489089v1 |
Versions
All published versions of this germline set.
| Set Name | Species | Species subgroup | Locus | Release Version | Release Date | doi |
|---|---|---|---|---|---|---|
| CAST/EiJ IGLV | Mus musculus | CAST/EiJ | IGL | 1 | 2022-05-03 | 10.5281/zenodo.7116843 |