{ "GermlineSet": [ { "germline_set_id": "OGRDB:G00055", "author": "William Lees", "lab_name": null, "lab_address": "Birkbeck College, University of London, Malet Street, London", "acknowledgements": null, "release_version": 1, "release_description": "First release", "release_date": "2022-05-31", "germline_set_name": "IGLJ (all strains)", "germline_set_ref": "OGRDB:IGLJ (all strains).1", "pub_ids": null, "species": { "id": "NCBITAXON:10090", "label": "Mus musculus" }, "species_subgroup": null, "species_subgroup_type": null, "locus": "IGL", "allele_descriptions": [ { "allele_description_id": "OGRDB:A02517", "allele_description_ref": "OGRDB:Mus musculus:IGLJ-2ERU.1", "maintainer": "William Lees", "acknowledgements": null, "lab_address": "Birkbeck College, University of London, Malet Street, London", "release_version": 1, "release_date": "31-May-2022", "release_description": "First release", "label": "IGLJ0-2ERU*00", "sequence": "TTATGTTTTCGGCAGTGGAACCAAGGTCACTGTCCTAG", "coding_sequence": "TTATGTTTTCGGCAGTGGAACCAAGGTCACTGTCCTAG", "ext_3prime": null, "aliases": [ "Kos et al: IGLJ2*01_2" ], "locus": "IGL", "chromosome": null, "sequence_type": "J", "functional": true, "inference_type": "Rearranged only", "species": { "id": "NCBITAXON:10090", "label": "Mus musculus" }, "species_subgroup": null, "species_subgroup_type": null, "status": null, "gene_designation": null, "subgroup_designation": null, "allele_designation": null, "allele_similarity_cluster_designation": null, "allele_similarity_cluster_member_id": null, "gene_start": 1, "gene_end": 38, "j_codon_frame": 2, "j_cdr3_end": 8, "j_rs_start": null, "j_rs_end": null, "unrearranged_support": [], "rearranged_support": [], "paralogs": null, "curation": null, "curational_tags": null }, { "allele_description_id": "OGRDB:A02512", "allele_description_ref": "OGRDB:Mus musculus:IGLJ-ACBW.1", "maintainer": "William Lees", "acknowledgements": null, "lab_address": "Birkbeck College, University of London, Malet Street, London", "release_version": 1, "release_date": "31-May-2022", "release_description": "First release", "label": "IGLJ0-ACBW*00", "sequence": "TTATGTTTTCGGCGGTGGAACCAAGGTCACTGTCCTAG", "coding_sequence": "TTATGTTTTCGGCGGTGGAACCAAGGTCACTGTCCTAG", "ext_3prime": null, "aliases": [ "Kos et al: IGLJ2*01" ], "locus": "IGL", "chromosome": null, "sequence_type": "J", "functional": true, "inference_type": "Rearranged only", "species": { "id": "NCBITAXON:10090", "label": "Mus musculus" }, "species_subgroup": null, "species_subgroup_type": null, "status": null, "gene_designation": null, "subgroup_designation": null, "allele_designation": null, "allele_similarity_cluster_designation": null, "allele_similarity_cluster_member_id": null, "gene_start": 1, "gene_end": 38, "j_codon_frame": 2, "j_cdr3_end": 8, "j_rs_start": null, "j_rs_end": null, "unrearranged_support": [], "rearranged_support": [], "paralogs": null, "curation": null, "curational_tags": null }, { "allele_description_id": "OGRDB:A02511", "allele_description_ref": "OGRDB:Mus musculus:IGLJ-FMEA.1", "maintainer": "William Lees", "acknowledgements": null, "lab_address": "Birkbeck College, University of London, Malet Street, London", "release_version": 1, "release_date": "31-May-2022", "release_description": "First release", "label": "IGLJ0-FMEA*00", "sequence": "CTGGGTGTTCGGTGGAGGAACCAAACTGACTGTCCTAG", "coding_sequence": "CTGGGTGTTCGGTGGAGGAACCAAACTGACTGTCCTAG", "ext_3prime": null, "aliases": [ "Kos et al: IGLJ1*01" ], "locus": "IGL", "chromosome": null, "sequence_type": "J", "functional": true, "inference_type": "Rearranged only", "species": { "id": "NCBITAXON:10090", "label": "Mus musculus" }, "species_subgroup": null, "species_subgroup_type": null, "status": null, "gene_designation": null, "subgroup_designation": null, "allele_designation": null, "allele_similarity_cluster_designation": null, "allele_similarity_cluster_member_id": null, "gene_start": 1, "gene_end": 38, "j_codon_frame": 2, "j_cdr3_end": 8, "j_rs_start": null, "j_rs_end": null, "unrearranged_support": [], "rearranged_support": [], "paralogs": null, "curation": null, "curational_tags": null }, { "allele_description_id": "OGRDB:A02513", "allele_description_ref": "OGRDB:Mus musculus:IGLJ-KL6B.1", "maintainer": "William Lees", "acknowledgements": null, "lab_address": "Birkbeck College, University of London, Malet Street, London", "release_version": 1, "release_date": "31-May-2022", "release_description": "First release", "label": "IGLJ0-KL6B*00", "sequence": "GTTTATTTTCGGCAGTGGAACCAAGGTCACTGTCCTAG", "coding_sequence": "GTTTATTTTCGGCAGTGGAACCAAGGTCACTGTCCTAG", "ext_3prime": null, "aliases": [ "Kos et al: IGLJ3*01" ], "locus": "IGL", "chromosome": null, "sequence_type": "J", "functional": true, "inference_type": "Rearranged only", "species": { "id": "NCBITAXON:10090", "label": "Mus musculus" }, "species_subgroup": null, "species_subgroup_type": null, "status": null, "gene_designation": null, "subgroup_designation": null, "allele_designation": null, "allele_similarity_cluster_designation": null, "allele_similarity_cluster_member_id": null, "gene_start": 1, "gene_end": 38, "j_codon_frame": 2, "j_cdr3_end": 8, "j_rs_start": null, "j_rs_end": null, "unrearranged_support": [], "rearranged_support": [], "paralogs": null, "curation": null, "curational_tags": null }, { "allele_description_id": "OGRDB:A02515", "allele_description_ref": "OGRDB:Mus musculus:IGLJ-PG3G.1", "maintainer": "William Lees", "acknowledgements": null, "lab_address": "Birkbeck College, University of London, Malet Street, London", "release_version": 1, "release_date": "31-May-2022", "release_description": "First release", "label": "IGLJ0-PG3G*00", "sequence": "TTGGGTGTTCGGAGGTGGAACCAGATTGACTGTCCTAGATGA", "coding_sequence": "TTGGGTGTTCGGAGGTGGAACCAGATTGACTGTCCTAGATGA", "ext_3prime": null, "aliases": [ "Kos et al: IGLJ4*01" ], "locus": "IGL", "chromosome": null, "sequence_type": "J", "functional": true, "inference_type": "Rearranged only", "species": { "id": "NCBITAXON:10090", "label": "Mus musculus" }, "species_subgroup": null, "species_subgroup_type": null, "status": null, "gene_designation": null, "subgroup_designation": null, "allele_designation": null, "allele_similarity_cluster_designation": null, "allele_similarity_cluster_member_id": null, "gene_start": 1, "gene_end": 42, "j_codon_frame": 2, "j_cdr3_end": 8, "j_rs_start": null, "j_rs_end": null, "unrearranged_support": [], "rearranged_support": [], "paralogs": null, "curation": null, "curational_tags": null }, { "allele_description_id": "OGRDB:A02514", "allele_description_ref": "OGRDB:Mus musculus:IGLJ-UWMQ.1", "maintainer": "William Lees", "acknowledgements": null, "lab_address": "Birkbeck College, University of London, Malet Street, London", "release_version": 1, "release_date": "31-May-2022", "release_description": "First release", "label": "IGLJ0-UWMQ*00", "sequence": "AGGTTCTTTTTCCTCAAATGGCCTATTGTATGCAGGAG", "coding_sequence": "AGGTTCTTTTTCCTCAAATGGCCTATTGTATGCAGGAG", "ext_3prime": null, "aliases": [ "Kos et al: IGLJ3P*01" ], "locus": "IGL", "chromosome": null, "sequence_type": "J", "functional": true, "inference_type": "Rearranged only", "species": { "id": "NCBITAXON:10090", "label": "Mus musculus" }, "species_subgroup": null, "species_subgroup_type": null, "status": null, "gene_designation": null, "subgroup_designation": null, "allele_designation": null, "allele_similarity_cluster_designation": null, "allele_similarity_cluster_member_id": null, "gene_start": 1, "gene_end": 38, "j_codon_frame": 2, "j_cdr3_end": 8, "j_rs_start": null, "j_rs_end": null, "unrearranged_support": [], "rearranged_support": [], "paralogs": null, "curation": null, "curational_tags": null }, { "allele_description_id": "OGRDB:A02516", "allele_description_ref": "OGRDB:Mus musculus:IGLJ-XVAO.1", "maintainer": "William Lees", "acknowledgements": null, "lab_address": "Birkbeck College, University of London, Malet Street, London", "release_version": 1, "release_date": "31-May-2022", "release_description": "First release", "label": "IGLJ0-XVAO*00", "sequence": "CTGGGTGTTCGGTGGAGGAACCAAATTGACTGTCCTAG", "coding_sequence": "CTGGGTGTTCGGTGGAGGAACCAAATTGACTGTCCTAG", "ext_3prime": null, "aliases": [ "Kos et al: IGLJ1*01_1" ], "locus": "IGL", "chromosome": null, "sequence_type": "J", "functional": true, "inference_type": "Rearranged only", "species": { "id": "NCBITAXON:10090", "label": "Mus musculus" }, "species_subgroup": null, "species_subgroup_type": null, "status": null, "gene_designation": null, "subgroup_designation": null, "allele_designation": null, "allele_similarity_cluster_designation": null, "allele_similarity_cluster_member_id": null, "gene_start": 1, "gene_end": 38, "j_codon_frame": 2, "j_cdr3_end": 8, "j_rs_start": null, "j_rs_end": null, "unrearranged_support": [], "rearranged_support": [], "paralogs": null, "curation": null, "curational_tags": null } ], "curation": "IGLJ genes for use with all strains\r\n\r\nAs published in Kos et al. (2022) (in preparation)" } ] }