Details


Organism	Human
Sequence Name	IGLV6-57*i01
IMGT Name	IGLV6-57*04
Affirmation Level	1
Full Sequence
Coding Sequence
Functional	True
Inference Type	Rearranged Only
Alternative names
Paralogs

Evidence

The table below lists the submissions, and the inferences within them, on which this published sequence is based. The list may be short when the sequence is first published, containing, for example, reference to just a single submission, but is expected to grow over time as additional inferences are submitted.

'Sequence Match' indicates whether the inference exactly matches the sequence, and clicking on the tick or cross will provide an alignment. Mismatches may be caused, for example, by the inclusion of leader sequences, or nucleotides in the inference which do not in IARC's opinion have sufficient evidence for inclusion in the sequence.

Submission ID	Accession No	Subject ID	Genotype Name	Sequence Name	Sequence Match
S00028	MK308866	A007	A007 VL	IGLV6-57*01_S1429

Supporting Observations

Sequences in other published genotypes which have been identified by IARC and support the inference:

No Items

Observations in VDJbase

Inferred sequences in VDJbase that match this sequence:

No Items

Additional Information


Sequence ID	A00059
Curator	Andrew Collins
Curator address	School of Biotechnology and Biomolecular Sciences, University of New South Wales, Sydney Australia
Version	2
Release Date	2020-08-10 00:00:00
Release Notes	Correct sequence name from IGLV-6-57*i01
Locus	IGL
Sequence Type	V
Gene Subgroup	-6
Gene Designation	57
Allele Designation	i01

Acknowledgements

Individuals acknowledged as contributing to this sequence:

No Items

Notes

Notes are added by IARC reviewers.


At the IARC meeting on July 20th 2020, the following features of the inference in the S000028 submission were noted: The sequence was seen in 1.49% of all unmutated rearrangements, with 14,472 sequences including 1776 perfect alignments to the inferred allele. There was abundant variation in the CDR3 regions of the aligned sequences. The IGLV6-5701 allele was also present in the genotype, at a somewhat lower frequency. Haplotype data is unavailable. Plots of the final 3’ nucleotides were considered, but the variability seen made it impossible to be certain of the final two nucleotides of the germline sequence. The sequence, up to and including nucleotide 333, was affirmed as the Level 1 sequence, IGLV6-57i01. Uncertainty regarding nucleotides 334-335 will be indicated in IARC and OGRDB publications by two dots at the end of the affirmed sequence.

At the IARC meeting on July 20th 2020, the following features of the inference in the S000028 submission were noted:

The sequence was seen in 1.49% of all unmutated rearrangements, with 14,472 sequences including 1776 perfect alignments to the inferred allele. There was abundant variation in the CDR3 regions of the aligned sequences. The IGLV6-57*01 allele was also present in the genotype, at a somewhat lower frequency. Haplotype data is unavailable. Plots of the final 3’ nucleotides were considered, but the variability seen made it impossible to be certain of the final two nucleotides of the germline sequence. The sequence, up to and including nucleotide 333, was affirmed as the Level 1 sequence, IGLV6-57*i01. Uncertainty regarding nucleotides 334-335 will be indicated in IARC and OGRDB publications by two dots at the end of the affirmed sequence.

Attachments

	Attachment File Name

History

History records log the times and reasons for the publication of each version of this sequence record.


Andrew Collins 2020-08-01 13:19:38	Version 1 published Published by the IARC on 1/8/2020.


William Lees 2020-08-10 15:55:56	Version 2 published Correct sequence name from IGLV-6-57*i01


Mats Ohlin 2021-04-29 22:32:20	*IMGT Name updated to IGLV6-5704** IMGT Name updated.