Details


Species	Human
Species subgroup
Subgroup type
Sequence Name	IGHV3-43D*i01
IUIS Name	IGHV3-43D*04
Alternative names
Affirmation Level	1
Full Sequence
Coding Sequence
Functionality	F
Inference Type	Rearranged Only
Mapped
Paralogs
Paralog Rep

Un-rearranged Observations

Un-rearranged sequence observations that support this sequence:

No Items

Observations in AIRR-seq Repertoires

Click here to review supporting data in VDJbase.

Clicking the link will take you to VDJbase. Open in a new tab if you want to keep this page open. In VDJbase, click on the count in the Apperances column to see a list of samples in which the sequence was found.

CDR delineation


CDR1 Start
CDR1 End
CDR2 Start
CDR2 End
CDR3 Start

Additional Information


Sequence ID	A00005
Curator
Curator address	School of Biotechnology and Biomolecular Sciences, University of New South Wales, Sydney Australia
Version	1
Release Date	2018-12-21
Release Notes	Submission published by IARC on Dec 21, 2018.
Locus	IGH
Sequence Type	V
Gene Subgroup	3
Gene Designation	43D
Allele Designation	i01

Acknowledgements

Individuals acknowledged as contributing to this sequence:

Name	Institution	ORCID ID
Linnea Thörnqvist	Dept. of Immunotechnology, Lund University, Lund, Sweden

Notes

Notes are added by IARC reviewers.


Originally approved by IARC on May 11, 2018. “The sequence is present at low frequency (0.07%), in the IgDiscover analysis. It was inferred by IgDiscover. No information was provided by the submitter regarding analysis with partis or TIgGER. Haplotype analysis could not be performed. Analysis for chimerism did not provide evidence against the existence of the sequence. It was agreed that the sequence should be moved to Level 1, subject to the provision of additional information.” Further deliberation on May 25, 2018 “MO provided information regarding primers used to generate the data upon which the submission of Linnea Thornquist was based. It was agreed that the information was sufficient for the previous decisions of IARC to be ratified (see minutes Meeting 14).” The allele was incorporated into IMGT on October 4, 2018 as IGHV3-43D04. The other most similar allele IGHV3-43D01 has since this inference was performed been renamed by IMGT as IGHV3-43D*03.

Originally approved by IARC on May 11, 2018.

“The sequence is present at low frequency (0.07%), in the IgDiscover analysis. It was inferred by IgDiscover. No information was provided by the submitter regarding analysis with partis or TIgGER. Haplotype analysis could not be performed. Analysis for chimerism did not provide evidence against the existence of the sequence. It was agreed that the sequence should be moved to Level 1, subject to the provision of additional information.”

Further deliberation on May 25, 2018
“MO provided information regarding primers used to generate the data upon which the submission of Linnea Thornquist was based. It was agreed that the information was sufficient for the previous decisions of IARC to be ratified (see minutes Meeting 14).”

The allele was incorporated into IMGT on October 4, 2018 as IGHV3-43D*04.
The other most similar allele IGHV3-43D*01 has since this inference was performed been renamed by IMGT as IGHV3-43D*03.

Attachments

No Items

History

History logs the times and reasons for the publication of each version of this sequence.


Mats Ohlin 2018-12-21 12:10:41	Version 1 published Submission published by IARC on Dec 21, 2018.

Versions

All published versions of this sequence.

Sequence Name	IMGT Name	Alternative names	Inference Type	Affirmation Level	Gene start	Gene end	CDR1 Start	CDR1 End	CDR2 Start	CDR2 End	CDR3 Start	Version	Date
IGHV3-43D*i01	IGHV3-43D*04		Rearranged Only	1								1	2018-12-21
IGHV3-43D*i01	IGHV3-43D*04		Rearranged Only	1								2	2019-04-12
IGHV3-43D*04	IGHV3-43D*04	IGHV3-43D*i01	Rearranged Only	1	1	297	76	99	151	174	289	3	2023-07-10