Species | Homo sapiens |
Species subgroup | |
Subgroup type | |
Sequence Name | IGHV2-70*i01 |
IUIS Name | |
Alternative names | |
Affirmation Level | 0 |
Full Sequence | |
Coding Sequence | |
Functionality | F |
Inference Type | Rearranged Only |
Mapped | |
Paralogs | |
Paralog Rep |
Un-rearranged sequence observations that support this sequence:
Click here to review supporting data in VDJbase.
Clicking the link will take you to VDJbase. Open in a new tab if you want to keep this page open. In VDJbase, click on the count in the Apperances column to see a list of samples in which the sequence was found.
CDR1 Start | 76 |
CDR1 End | 105 |
CDR2 Start | 157 |
CDR2 End | 177 |
CDR3 Start | 292 |
Sequence ID | A00044 |
Curator | |
Curator address | Dept. of Immunotechnology, Lund University, Medicon Village building 406, S-22381 Lund, Sweden |
Version | 1 |
Release Date | 2019-12-12 |
Release Notes | Submission published by IARC on Dec 13, 2019. |
Locus | IGH |
Sequence Type | V |
Gene Subgroup | 2 |
Gene Designation | 70 |
Allele Designation | i01 |
Gene start | 1 |
Gene end | 298 |
Notes are added by IARC reviewers.
Assessed by IARC on November 18, 2019 during meeting 45. The committee considered IGHV2-70*01_S6619 (A124G) of Genotype B12 of submission S00010, which was previously evaluated as IGHV2-70*01_S4660 of submission S00004 at Meeting 8. It was affirmed as a Level 0 sequence at that time. The sequence was seen in just 0.05% of all unmutated rearrangements, with 296 sequences including 93 perfect matches to the inferred allele. There was abundant variation in the CDR3 regions of the aligned sequences. Two other alleles were present in the genotype, and it is possible that one of these three sequences is an IGHV2-70D sequence. Haplotype data is supportive of the inference, but in light of the very low frequency of rearrangements seen and the complicated haplotype of this subject, it was affirmed as a Level 0 sequence. The sequence was affirmed up to and including nucleotide 319 even though alleles of IGHV2-70/IGHV2-70D in general extend up to and including base 322. However, the nucleotide composition of the subsequent three bases of genes associated with this inferred allele did not support their inference. It is however likely that three additional 3’ nucleotides are present in the sequence, and this is indicated in IARC and OGRDB publications by three dots at the end of the sequence. |
History logs the times and reasons for the publication of each version of this sequence.
Andrew Collins 2019-12-12 22:50:56 | Version 1 published Submission published by IARC on Dec 13, 2019. |
All published versions of this sequence.
Sequence Name | IMGT Name | Version | Date |
---|---|---|---|
IGHV2-70*i01 | 1 | 2019-12-12 | |
IGHV2-70*i01 | IGHV2-70*20 | 1 | 2021-05-18 |
IGHV2-70*20 | IGHV2-70*20 | 2 | 2023-07-10 |