Species | Homo sapiens |
Species subgroup | |
Subgroup type | none |
Sequence Name | TRBV19*i01 |
IUIS Name | |
Alternative names | TRBV19*01 A24G |
Affirmation Level | 1 |
Full Sequence | |
Coding Sequence | |
Functionality | F |
Inference Type | Rearranged |
Mapped | |
Paralogs | |
Paralog Rep |
The table below lists submissions to IARC , and the inferences within them, on which this IARC-affirmed sequence is based.
'Sequence Match' indicates whether the inference exactly matches the sequence, and clicking on the tick or cross will provide an alignment. Mismatches may be caused, for example, by the inclusion of leader sequences, or nucleotides in the inference which do not in IARC's opinion have sufficient evidence for inclusion in the sequence.
Submission ID | Accession No | Subject ID | Genotype Name | Sequence Name | Sequence Match |
---|---|---|---|---|---|
S00036 | OW166726 | S24 | P4_I24_S1_ogrdb_report | TRBV19*01_A24G |
Inferred sequences in VDJbase that match this sequence:
VDJbase Allele Name | Subjects | Sequence Match |
---|---|---|
TRBV19*01_a24g | 14 |
Un-rearranged sequence observations that support this sequence:
CDR1 Start | 79 |
CDR1 End | 93 |
CDR2 Start | 145 |
CDR2 End | 162 |
CDR3 Start | 274 |
UTR 5' Start | |
UTR 5' End | |
L-PART1 Start | |
L-PART1 End | |
L_PART1 | |
L-PART2 Start | |
L-PART2 End | |
L_PART2 | |
v_rs_start | |
v_rs_end | |
V_HEPTAMER | |
V_NONAMER |
3' Extension | |
3' start | |
3' end | |
5' start | |
5' end |
Sequence ID | A02563 |
Curator | Mats Ohlin |
Curator address | Dept. of Immunotechnology, Lund University, Medicon Village building 406, S-22381 Lund, Sweden |
Version | 1 |
Release Date | 2022-07-26 |
Release Notes | The allele was published by IARC on July 26th, 2022. |
Locus | TRB |
Sequence Type | V |
Gene Subgroup | 19 |
Gene Designation | 19 |
Allele Designation | i01 |
Gene start | 1 |
Gene end | 283 |
Notes are added by IARC reviewers.
This allele was affirmed at IARC meeting 99 on May 9th, 2022. TRBV19*01_A24G has been inferred in six genotypes in the VDJbase P4 data set, including in VDJbase P4_I24_S1, a haplotypable data set (based on heterozygocity in TRBJ1-6). The genotype is also implied to carry TRBV19*01. No other gene in the IMGT database is closely related to these alleles of TRBV19. The novel allele is the most expressed allele in the repertoire (53% allelic frequency; 0.71% of the total error-free population). It is represented by 240 error-free sequences and 202 unique CDR3s in the error-free set. Haplotyping based on allelic diversity in TRBJ1-6 demonstrates perfect separation from TRBV19*01. IARC affirms the sequence at Level 1 up to and including base 322. It is acknowledged that the allele most likely carries 4 additional bases, typically TAGA, at base positions 323-326. Trailing “.” indicates IARC’s opinion that the sequence is likely to contain additional 3’-nucleotides for which there is insufficient evidence to make an affirmation. |
History logs the times and reasons for the publication of each version of this sequence.
Mats Ohlin 2022-07-26 09:52:44 | Version 1 published The allele was published by IARC on July 26th, 2022. |
All published versions of this sequence.
Sequence Name | IMGT Name | Version | Date |
---|---|---|---|
TRBV19*i01 | 1 | 2022-07-26 |