Genotype 'P4_I24_S1_ogrdb_report' (Submission S00036)


Genotype Name	P4_I24_S1_ogrdb_report
Subject ID	S24
Locus	TRA
Sequence Type	V
Genotype Filename	P4_I24_S1_ogrdb_report.csv
Tool/Settings	P4_Sequence_protocol

Sequences Threshold

Frequency Threshold

Submitted Inferences Only

Sample	Title
SAMEA4973457	HCV B-Cell

Record Set	Title
ERR2843420	Illumina MiSeq sequencing

Allele names in italic are not listed in the reference set. Allele names in bold are put forward in the submission for consideration as inferred sequences.

A cross in the Sequence column indicates that the sequence listed in the genotype does not match the sequence of the corresponding allele in the reference set.

An information icon in the Sequence column alerts you to other information on this sequence - hover over for details.

Novel Alleles

Allele name	Sequences	Closest Reference	Closest in Host	NT Diffs (reference)	NT Diffs (host)	NT Substs (reference)	AA Diffs (reference)	AA Substs (reference)
TRBV10-303_313GCCATCAGTGAGTC326*	515	TRBV10-3*03	TRBV10-3*02	0	3	-313G,-314C,-315C,-316A,-317T,-318C,-319A,-320G,-321T,-322G,-323A,-324G,-325T,-326C	4	-105A,-106I,-107S,-108E
TRBV1402_322CAAGA326*	334	TRBV14*02	TRBV14*01	0	1	-322C,-323A,-324A,-325G,-326A	1	-108Q
**TRBV1901_A24G***	365	TRBV19*01	TRBV19*01	1	1	A24G	0
**TRBV12-401_C87T***	656	TRBV12-4*01	TRBV12-4*01	1	1	C87T	0
TRBV12-501_C28G*	59	TRBV12-5*01	TRBV12-5*01	1	1	C28G	1	H10D
TRBV5-502_322TTGG325*	406	TRBV5-5*02	TRBV5-7*01	0	9	-322T,-323T,-324G,-325G	1	-108L
TRBV6-2301*	1329
TRBV7-701_C315T*	108	TRBV7-7*01	TRBV7-6*01	1	12	C315T	0

Genotype

Allele name	Sequences	Unmutated Seqs	Unmutated % within allele	Allelic %	Total unmutated population (%)	Unique CDR3s	Unique CDR3s with unmutated	Haplotyping Gene	Haplotyping Ratio
TRBV10-1*01	165	103	62.42	100.00	0.30	113	82	TRBJ1-6	36:64
TRBV20-1*01	2928	1943	66.36	46.00	5.73	2371	1730	TRBJ1-6	3:97
TRBV20-1*05	3473	2236	64.38	54.00	6.60	2562	1905	TRBJ1-6	100:0
TRBV10-2*01	174	127	72.99	100.00	0.37	122	98	TRBJ1-6	0:100
TRBV10-3*02	454	329	72.47	47.00	0.97	389	302	TRBJ1-6	5:95
TRBV10-303_313GCCATCAGTGAGTC326*	515	402	78.06	53.00	1.19	455	371	TRBJ1-6	100:0
TRBV1*01	5	3	60.00	100.00	0.01	5	3	TRBJ1-6
TRBV13*01	472	265	56.14	100.00	0.78	257	184	TRBJ1-6	69:31
TRBV14*01	224	152	67.86	40.00	0.45	196	146	TRBJ1-6	0:100
TRBV1402_322CAAGA326*	334	225	67.37	60.00	0.66	291	208	TRBJ1-6	100:0
TRBV15*02	568	361	63.56	100.00	1.06	473	334	TRBJ1-6	67:33
TRBV16*01	26	19	73.08	100.00	0.06	26	19	TRBJ1-6	50:50
TRBV17*01	3	3	100.00	100.00	0.01	2	2	TRBJ1-6
TRBV18*01	1005	747	74.33	100.00	2.20	878	677	TRBJ1-6	31:69
TRBV19*01	319	215	67.40	47.00	0.63	220	162	TRBJ1-6	0:100
**TRBV1901_A24G***	365	240	65.75	53.00	0.71	286	202	TRBJ1-6	100:0
TRBV2*01	1220	836	68.52	100.00	2.47	1037	765	TRBJ1-6	26:74
TRBV27*01	1791	1217	67.95	100.00	3.59	1277	1012	TRBJ1-6	31:69
TRBV28*01	1593	997	62.59	100.00	2.94	941	734	TRBJ1-6	20:80
TRBV30*01	656	407	62.04	100.00	1.20	528	337	TRBJ1-6	47:53
TRBV9*01	1296	917	70.76	100.00	2.71	1106	847	TRBJ1-6	37:63
TRBV11-1*01	184	122	66.30	100.00	0.36	168	116	TRBJ1-6	33:67
TRBV21-1*01	678	530	78.17	100.00	1.56	548	456	TRBJ1-6	35:65
TRBV11-2*01	904	614	67.92	100.00	1.81	709	530	TRBJ1-6	44:56
TRBV11-3*01	50	44	88.00	19.00	0.13	49	44	TRBJ1-6	0:100
TRBV11-3*04	215	145	67.44	81.00	0.43	202	144	TRBJ1-6	100:0
TRBV12-1*01	3	2	66.67	100.00	0.01	3	2	TRBJ1-6
TRBV12-2*01	30	22	73.33	100.00	0.06	30	22	TRBJ1-6
TRBV12-3*01	2224	1231	55.35	100.00	3.63	1388	1024	TRBJ1-6	48:52
TRBV12-4*01	255	177	69.41	28.00	0.52	221	165	TRBJ1-6	0:100
**TRBV12-401_C87T***	656	499	76.07	72.00	1.47	588	467	TRBJ1-6	100:0
TRBV12-5*01	94	66	70.21	61.00	0.19	91	65	TRBJ1-6	100:0
TRBV12-501_C28G*	59	41	69.49	39.00	0.12	52	40	TRBJ1-6
TRBV23-1*01	119	65	54.62	100.00	0.19	99	57	TRBJ1-6	33:67
TRBV3-1*01	1633	1159	70.97	100.00	3.42	1371	1044	TRBJ1-6	29:71
TRBV3-2*02	18	9	50.00	100.00	0.03	17	9	TRBJ1-6
TRBV24-1*01	1512	848	56.08	100.00	2.50	876	633	TRBJ1-6	31:69
TRBV4-1*01	992	776	78.23	100.00	2.29	795	667	TRBJ1-6	25:75
TRBV4-2*01	614	442	71.99	100.00	1.30	478	389	TRBJ1-6	25:75
TRBV4-3*01	890	533	59.89	100.00	1.57	554	430	TRBJ1-6	100:0
TRBV25-1*01	338	253	74.85	100.00	0.75	310	241	TRBJ1-6	48:52
TRBV5-1*01	3411	2439	71.50	100.00	7.20	2905	2246	TRBJ1-6	24:76
TRBV5-3*01	11	6	54.55	100.00	0.02	11	6	TRBJ1-6
TRBV5-4*01	224	159	70.98	100.00	0.47	193	144	TRBJ1-6	15:85
TRBV5-502_322TTGG325*	406	293	72.17	100.00	0.86	341	256	TRBJ1-6	23:77
TRBV5-6*01	934	538	57.60	100.00	1.59	516	372	TRBJ1-6	31:69
TRBV5-7*01	8	4	50.00	100.00	0.01	7	4	TRBJ1-6
TRBV5-8*01	87	68	78.16	100.00	0.20	75	59	TRBJ1-6	0:100
TRBV6-1*01	998	703	70.44	100.00	2.07	854	646	TRBJ1-6	24:76
TRBV6-4*01	189	139	73.54	100.00	0.41	158	122	TRBJ1-6	38:62
TRBV6-5*01	1718	1180	68.68	100.00	3.48	1384	1048	TRBJ1-6	37:63
TRBV6-6*01	1052	709	67.40	100.00	2.09	771	587	TRBJ1-6	40:60
TRBV6-7*01	17	10	58.82	100.00	0.03	17	10	TRBJ1-6
TRBV6-8*01	5	4	80.00	100.00	0.01	4	4	TRBJ1-6
TRBV6-9*01	7	4	57.14	100.00	0.01	6	4	TRBJ1-6
TRBV6-2301*	1329	877	65.99	100.00	2.59	982	731	TRBJ1-6	50:50
TRBV7-1*01	2	2	100.00	100.00	0.01	2	2	TRBJ1-6
TRBV7-2*01	1795	1208	67.30	76.00	3.56	1450	1080	TRBJ1-6	100:0
TRBV7-2*02	557	371	66.61	24.00	1.09	454	329	TRBJ1-6	0:100
TRBV7-3*01	1427	937	65.66	100.00	2.76	1050	797	TRBJ1-6	42:58
TRBV7-4*01	36	24	66.67	100.00	0.07	31	23	TRBJ1-6	100:0
TRBV7-6*01	448	326	72.77	100.00	0.96	381	291	TRBJ1-6	50:50
TRBV7-701_C315T*	108	81	75.00	100.00	0.24	100	79	TRBJ1-6
TRBV7-8*01	706	500	70.82	100.00	1.48	572	432	TRBJ1-6	19:81
TRBV7-9*03	2596	1698	65.41	100.00	5.01	1941	1454	TRBJ1-6	27:73
TRBV29-1*01	3309	2296	69.39	100.00	6.77	2419	1911	TRBJ1-6	58:42
Totals	50434	33898	67.21						1425:-1325