Species | Homo sapiens |
Species subgroup | |
Subgroup type | |
Sequence Name | IGHV5-51*i01 |
IUIS Name | |
Alternative names | IGHV5-51*p13 |
Affirmation Level | 1 |
Full Sequence | |
Coding Sequence | |
Functionality | F |
Inference Type | Rearranged Only |
Mapped | |
Paralogs | |
Paralog Rep |
Un-rearranged sequence observations that support this sequence:
Click here to review supporting data in VDJbase.
Clicking the link will take you to VDJbase. Open in a new tab if you want to keep this page open. In VDJbase, click on the count in the Apperances column to see a list of samples in which the sequence was found.
CDR1 Start | |
CDR1 End | |
CDR2 Start | |
CDR2 End | |
CDR3 Start |
Sequence ID | A00013 |
Curator | |
Curator address | Dept. of Immunotechnology, Lund University, Medicon Village building 406, S-22381 Lund, Sweden |
Version | 2 |
Release Date | 2019-04-12 |
Release Notes | A trailing “.” indicates IARC’s opinion that the sequence is likely to contain additional 3’ nucleotides for which there is insufficient evidence to make an affirmation. |
Locus | IGH |
Sequence Type | V |
Gene Subgroup | 5 |
Gene Designation | 51 |
Allele Designation | i01 |
Gene start | |
Gene end |
Notes are added by IARC reviewers.
This sequence represents IGHV5-51*03 C228T in the IMGT numbering system. The committee noted a rearrangement frequency of 1.25%, with 1128 alignments including 304 perfect matches to the inferred allele. There was abundant variation in the CDR3 regions of the aligned sequences. The genotype showed the individual to be heterozygous at the IGHV5-51 locus, with the alternative IGHV5-51*03 allele being associated with 1539 sequences for an allele ratio of 42:58. The sequence was affirmed at level 1 at IARC Meeting 33 on March 15, 2019. The sequence is affirmed only up to and including base 318, the final base of the inference and its GenBank record, and of the corresponding closest allele (IGHV5-51*03) in the IMGT database. (April 12, 2019) A trailing “.” indicates IARC’s opinion that the sequence is likely to contain additional 3’ nucleotides for which there is insufficient evidence to make an affirmation. |
History logs the times and reasons for the publication of each version of this sequence.
Andrew Collins 2019-04-02 22:39:35 | Version 1 published Submission published by IARC on April 3, 2019 |
Mats Ohlin 2019-04-12 14:47:01 | Version 2 published A trailing “.” indicates IARC’s opinion that the sequence is likely to contain additional 3’ nucleotides for which there is insufficient evidence to make an affirmation. |
v1 | v2 | |
---|---|---|
Notes | changed |
All published versions of this sequence.
Sequence Name | IMGT Name | Version | Date |
---|---|---|---|
IGHV5-51*i01 | 1 | 2019-04-02 | |
IGHV5-51*i01 | 2 | 2019-04-12 | |
IGHV5-51*i01 | IGHV5-51*06 | 3 | 2019-05-16 |
IGHV5-51*06 | IGHV5-51*06 | 5 | 2023-07-24 |
IGHV5-51*06 | IGHV5-51*06 | 6 | 2023-08-16 |