Germline Sets
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For information on the names and approach used in these sets, please see
our poster.
For tools to help with the adoption of the new name format, please see
receptor-germline-tools.
The
OGRDB REST API
allows you to list and download germline sets programatically.
Mouse
IGKJ (all strains)
Revision: 1
Date: 2022-05-31
IGKJ genes for use with all strains As published in Kos et al. (2022) (in preparation)
AIRR (JSON)
FASTA Gapped
FASTA Ungapped
IGLJ (all strains)
Revision: 1
Date: 2022-05-31
IGLJ genes for use with all strains As published in Kos et al. (2022) (in preparation)
AIRR (JSON)
FASTA Gapped
FASTA Ungapped
Mouse strain 129S1/SvImJ
129S1/SvImJ IGKV
Revision: 2
Date: 2022-05-03
The germline set is based on sequences published in Kos et al. (2022) (in preparation)
AIRR (JSON)
FASTA Gapped
FASTA Ungapped
129S1/SvlmJ IGLV
Revision: 2
Date: 2022-05-03
The germline set is based on sequences published in Kos et al. (2022) (in preparation)
AIRR (JSON)
FASTA Gapped
FASTA Ungapped
Mouse strain A/J
A/J IGKV
Revision: 2
Date: 2022-05-03
The germline set is based on sequences published in Kos et al. (2022) (in preparation)
AIRR (JSON)
FASTA Gapped
FASTA Ungapped
A/J IGLV
Revision: 2
Date: 2022-05-03
The germline set is based on sequences published in Kos et al. (2022) (in preparation)
AIRR (JSON)
FASTA Gapped
FASTA Ungapped
Mouse strain AKR/J
AKR/J IGKV
Revision: 1
Date: 2022-05-03
The germline set is based on sequences published in Kos et al. (2022) (in preparation)
AIRR (JSON)
FASTA Gapped
FASTA Ungapped
AKR/J IGLV
Revision: 1
Date: 2022-05-03
The germline set is based on sequences published in Kos et al. (2022) (in preparation)
AIRR (JSON)
FASTA Gapped
FASTA Ungapped
Mouse strain BALB/c
BALB/c IGH
Revision: 3
Date: 2022-06-02
The germline set is based on sequences published in Jackson et al. (2022) (DOI: 10.3389/fimmu.2022.888555)
AIRR (JSON)
FASTA Gapped
FASTA Ungapped
Mouse strain BALB/c/ByJ
BALB/c/ByJ IGLV
Revision: 1
Date: 2022-05-03
The germline set is based on sequences published in Kos et al. (2022) (in preparation)
AIRR (JSON)
FASTA Gapped
FASTA Ungapped
BALB/cByJ IGKV
Revision: 1
Date: 2022-05-03
The germline set is based on sequences published in Kos et al. (2022) (in preparation)
AIRR (JSON)
FASTA Gapped
FASTA Ungapped
Mouse strain C3H/HeJ
C3H/HeJ IGKV
Revision: 1
Date: 2022-05-03
The germline set is based on sequences published in Kos et al. (2022) (in preparation)
AIRR (JSON)
FASTA Gapped
FASTA Ungapped
C3H/HeJ IGLV
Revision: 1
Date: 2022-05-03
The germline set is based on sequences published in Kos et al. (2022) (in preparation)
AIRR (JSON)
FASTA Gapped
FASTA Ungapped
Mouse strain C57BL/6
C57BL/6 IGH
Revision: 3
Date: 2022-06-02
The germline set is based on sequences published in Jackson et al. (2022) (DOI: 10.3389/fimmu.2022.888555)
AIRR (JSON)
FASTA Gapped
FASTA Ungapped
Mouse strain C57BL/6J
C57BL/6J IGKV
Revision: 1
Date: 2022-05-03
The germline set is based on sequences published in Kos et al. (2022) (in preparation)
AIRR (JSON)
FASTA Gapped
FASTA Ungapped
C57BL/6J IGLV
Revision: 1
Date: 2022-05-03
The germline set is based on sequences published in Kos et al. (2022) (in preparation)
AIRR (JSON)
FASTA Gapped
FASTA Ungapped
Mouse strain CAST/EiJ
CAST/EiJ IGH
Revision: 1
Date: 2022-05-14
The germline set is based on sequences published in Watson et al. (2019) (DOI: 10.1111/imcb.12288)
AIRR (JSON)
FASTA Gapped
FASTA Ungapped
CAST/EiJ IGKV
Revision: 1
Date: 2022-05-03
The germline set is based on sequences published in Kos et al. (2022) (in preparation)
AIRR (JSON)
FASTA Gapped
FASTA Ungapped
CAST/EiJ IGLV
Revision: 1
Date: 2022-05-03
The germline set is based on sequences published in Kos et al. (2022) (in preparation)
AIRR (JSON)
FASTA Gapped
FASTA Ungapped
Mouse strain CBA/J
CBA/J IGKV
Revision: 1
Date: 2022-05-03
The germline set is based on sequences published in Kos et al. (2022) (in preparation)
AIRR (JSON)
FASTA Gapped
FASTA Ungapped
CBA/J IGLV
Revision: 1
Date: 2022-05-03
The germline set is based on sequences published in Kos et al. (2022) (in preparation)
AIRR (JSON)
FASTA Gapped
FASTA Ungapped
Mouse strain DBA/1J
DBA/1J IGKV
Revision: 1
Date: 2022-05-03
The germline set is based on sequences published in Kos et al. (2022) (in preparation)
AIRR (JSON)
FASTA Gapped
FASTA Ungapped
DBA/1J IGLV
Revision: 1
Date: 2022-05-03
The germline set is based on sequences published in Kos et al. (2022) (in preparation)
AIRR (JSON)
FASTA Gapped
FASTA Ungapped
Mouse strain DBA/2J
DBA/2J IGKV
Revision: 1
Date: 2022-05-03
AIRR (JSON)
FASTA Gapped
FASTA Ungapped
DBA/2J IGLV
Revision: 1
Date: 2022-05-03
The germline set is based on sequences published in Kos et al. (2022) (in preparation)
AIRR (JSON)
FASTA Gapped
FASTA Ungapped
Mouse strain LEWES/EiJ
LEWES/EiJ IGH
Revision: 1
Date: 2022-05-14
The germline set is based on sequences published in Watson et al. (2019) (DOI: 10.1111/imcb.12288)
AIRR (JSON)
FASTA Gapped
FASTA Ungapped
LEWES/EiJ IGKV
Revision: 1
Date: 2022-05-03
The germline set is based on sequences published in Kos et al. (2022) (in preparation)
AIRR (JSON)
FASTA Gapped
FASTA Ungapped
LEWES/EiJ IGLV
Revision: 1
Date: 2022-05-03
The germline set is based on sequences published in Kos et al. (2022) (in preparation)
AIRR (JSON)
FASTA Gapped
FASTA Ungapped
Mouse strain MRL/MpJ
MRL/MpJ IGKV
Revision: 1
Date: 2022-05-03
The germline set is based on sequences published in Kos et al. (2022) (in preparation)
AIRR (JSON)
FASTA Gapped
FASTA Ungapped
MRL/MpJ IGLV
Revision: 1
Date: 2022-05-03
The germline set is based on sequences published in Kos et al. (2022) (in preparation)
AIRR (JSON)
FASTA Gapped
FASTA Ungapped
Mouse strain MSM/MsJ
MSM/MsJ IGH
Revision: 1
Date: 2022-05-15
The germline set is based on sequences published in Watson et al. (2019) (DOI: 10.1111/imcb.12288)
AIRR (JSON)
FASTA Gapped
FASTA Ungapped
MSM/MsJ IGKV
Revision: 1
Date: 2022-05-03
The germline set is based on sequences published in Kos et al. (2022) (in preparation)
AIRR (JSON)
FASTA Gapped
FASTA Ungapped
MSM/MsJ IGLV
Revision: 1
Date: 2022-05-03
The germline set is based on sequences published in Kos et al. (2022) (in preparation)
AIRR (JSON)
FASTA Gapped
FASTA Ungapped
Mouse strain NOD/ShiLtJ
NOD/ShiLtJ IGH
Revision: 1
Date: 2022-05-15
The germline set is based on sequences published in Watson et al. (2019) (DOI: 10.1111/imcb.12288)
AIRR (JSON)
FASTA Gapped
FASTA Ungapped
NOD/ShiLtJ IGKV
Revision: 1
Date: 2022-05-03
The germline set is based on sequences published in Kos et al. (2022) (in preparation)
AIRR (JSON)
FASTA Gapped
FASTA Ungapped
NOD/ShiLtJ IGLV
Revision: 1
Date: 2022-05-03
The germline set is based on sequences published in Kos et al. (2022) (in preparation)
AIRR (JSON)
FASTA Gapped
FASTA Ungapped
Mouse strain NOR/LtJ
NOR/LtJ IGKV
Revision: 1
Date: 2022-05-03
The germline set is based on sequences published in Kos et al. (2022) (in preparation)
AIRR (JSON)
FASTA Gapped
FASTA Ungapped
NOR/LtJ IGLV
Revision: 1
Date: 2022-05-03
The germline set is based on sequences published in Kos et al. (2022) (in preparation)
AIRR (JSON)
FASTA Gapped
FASTA Ungapped
Mouse strain NZB/BlNJ
NZB/BlNJ IGKV
Revision: 1
Date: 2022-05-03
The germline set is based on sequences published in Kos et al. (2022) (in preparation)
AIRR (JSON)
FASTA Gapped
FASTA Ungapped
NZB/BlNJ IGLV
Revision: 1
Date: 2022-05-03
The germline set is based on sequences published in Kos et al. (2022) (in preparation)
AIRR (JSON)
FASTA Gapped
FASTA Ungapped
Mouse strain PWD/PhJ
PWD/PhJ IGH
Revision: 1
Date: 2022-05-15
The germline set is based on sequences published in Watson et al. (2019) (DOI: 10.1111/imcb.12288)
AIRR (JSON)
FASTA Gapped
FASTA Ungapped
PWD/PhJ IGKV
Revision: 1
Date: 2022-05-03
The germline set is based on sequences published in Kos et al. (2022) (in preparation)
AIRR (JSON)
FASTA Gapped
FASTA Ungapped
PWD/PhJ IGLV
Revision: 1
Date: 2022-05-03
The germline set is based on sequences published in Kos et al. (2022) (in preparation)
AIRR (JSON)
FASTA Gapped
FASTA Ungapped
Mouse strain SJL/J
SJL/J IGKV
Revision: 1
Date: 2022-05-03
The germline set is based on sequences published in Kos et al. (2022) (in preparation)
AIRR (JSON)
FASTA Gapped
FASTA Ungapped
SJL/J IGLV
Revision: 1
Date: 2022-05-03
The germline set is based on sequences published in Kos et al. (2022) (in preparation)
AIRR (JSON)
FASTA Gapped
FASTA Ungapped
For information on the names and approach used in these sets, please see
our poster.
For tools to help with the adoption of the new name format, please see
receptor-germline-tools.
The
OGRDB REST API
allows you to list and download germline sets programatically.