Species | Human |
Species subgroup | |
Subgroup type | |
Sequence Name | IGLV3-21*i01 |
IUIS Name | IGLV3-21*04 |
Alternative names | |
Affirmation Level | 1 |
Full Sequence | |
Coding Sequence | |
Functionality | F |
Inference Type | Rearranged Only |
Alternative names | |
Paralogs |
The table below lists the submissions, and the inferences within them, on which this published sequence is based. The list may be short when the sequence is first published, containing, for example, reference to just a single submission, but is expected to grow over time as additional inferences are submitted.
'Sequence Match' indicates whether the inference exactly matches the sequence, and clicking on the tick or cross will provide an alignment. Mismatches may be caused, for example, by the inclusion of leader sequences, or nucleotides in the inference which do not in IARC's opinion have sufficient evidence for inclusion in the sequence.
Submission ID | Accession No | Subject ID | Genotype Name | Sequence Name | Sequence Match |
---|---|---|---|---|---|
S00028 | MK308864 | A007 | A007 VL | IGLV3-21*01_S5562 |
Sequences in other published genotypes which have been identified by IARC and support the inference:
Inferred sequences in VDJbase that match this sequence:
Un-rearranged sequence observations that support this sequence:
Sequence ID | A00056 |
Curator address | School of Biotechnology and Biomolecular Sciences, University of New South Wales, Sydney Australia |
Version | 1 |
Release Date | 2020-08-01 |
Release Notes | Published by the IARC on 1/8/2020. |
Locus | IGL |
Sequence Type | V |
Gene Subgroup | 3 |
Gene Designation | 21 |
Allele Designation | i01 |
Notes are added by IARC reviewers.
Originally approved by IARC at Meeting 57 on July 7, 2020, where it was noted: “The sequence was seen in 1.61% of all unmutated rearrangements, with 9,680 sequences including 1925 perfect alignments to the inferred allele. There was abundant variation in the CDR3 regions of the aligned sequences. A second IGLV3-21 allele, IGLV3-21*03, was also present in the genotype, at a higher frequency, but the inferred allele still accounted for 35% of all IGLV3-21 alignments. Haplotype data is unavailable. Plots of the final 3’ nucleotides were considered, but the variability seen made it impossible to consider the final two nucleotides of the sequence. These were not part of the Genbank submission. The sequence, up to and including nucleotide 339, was affirmed as the Level 1 sequence, IGLV3-21*i01. Uncertainty regarding nucleotides 340-341 will be indicated in IARC and OGRDB publications by two dots at the end of the affirmed sequence.” |
History logs the times and reasons for the publication of each version of this sequence.
Andrew Collins 2020-08-01 13:21:02 | Version 1 published Published by the IARC on 1/8/2020. |
All published versions of this sequence.
Sequence Name | IMGT Name | Alternative names | Inference Type | Affirmation Level | Species subgroup | Subgroup type | Version | Date |
---|---|---|---|---|---|---|---|---|
IGLV3-21*i01 | IGLV3-21*04 | Rearranged Only | 1 | 1 | 2020-08-01 |