Species | Homo sapiens |
Species subgroup | |
Subgroup type | |
Sequence Name | IGLV10-54*i01 |
IUIS Name | IGLV10-54*04 |
Alternative names | |
Affirmation Level | 1 |
Full Sequence | |
Coding Sequence | |
Functionality | F |
Inference Type | Rearranged Only |
Mapped | |
Paralogs | |
Paralog Rep |
Inferred sequences in VDJbase that match this sequence:
VDJbase Allele Name | Subjects | Sequence Match |
---|---|---|
IGLV10-54*01_a228c | 24 |
Un-rearranged sequence observations that support this sequence:
CDR1 Start | 76 |
CDR1 End | 99 |
CDR2 Start | 151 |
CDR2 End | 159 |
CDR3 Start | 268 |
Sequence ID | A00055 |
Curator | |
Curator address | School of Biotechnology and Biomolecular Sciences, University of New South Wales, Sydney Australia |
Version | 1 |
Release Date | 2020-07-30 |
Release Notes | Submission published by IARC on July 30th 2020. |
Locus | IGL |
Sequence Type | V |
Gene Subgroup | 10 |
Gene Designation | 54 |
Allele Designation | i01 |
Gene start | 1 |
Gene end | 294 |
Notes are added by IARC reviewers.
The sequence was first affirmed at IARC Meeting 53 on April 14th 2020, where it was noted: “The sequence was seen in 1.79% of all unmutated rearrangements, with 11279 sequences including 2138 perfect matches to the inferred allele. There was abundant variation in the CDR3 regions of the aligned sequences. The IGLV10-54*01 allele was also present in the genotype, at a similar frequency (1.77% of all unmutated sequences; 7826 sequences; 2117 unmutated sequences). Haplotype data is unavailable. Plots of the final 3’ nucleotides showed a high level of variability, making it impossible to determine the final three nucleotides with certainty. The sequence, up to and including nucleotide 339, was affirmed as a Level 1 sequence. Uncertainty regarding nucleotides 340-341 will be indicated in IARC and OGRDB publications by two dots at the end of the affirmed sequence.” |
History logs the times and reasons for the publication of each version of this sequence.
Andrew Collins 2020-07-30 12:58:46 | Version 1 published Submission published by IARC on July 30th 2020. |
Mats Ohlin 2021-04-29 22:33:15 | IMGT Name updated to IGLV10-54*04 IMGT Name updated. |
All published versions of this sequence.
Sequence Name | IMGT Name | Version | Date |
---|---|---|---|
IGLV10-54*i01 | IGLV10-54*04 | 1 | 2020-07-30 |
IGLV10-54*04 | IGLV10-54*04 | 2 | 2023-07-10 |
IGLV10-54*04 | IGLV10-54*04 | 3 | 2024-02-22 |