Details

SpeciesHuman
Species subgroup
Subgroup typenone
Sequence NameIGHV2-70*i02
IUIS Name
Alternative names
Affirmation Level0
Full Sequence
Coding Sequence
FunctionalityF
Inference TypeRearranged
MappedFalse
Paralogs
Paralog RepFalse

Evidence

The table below lists submissions to IARC , and the inferences within them, on which this IARC-affirmed sequence is based.

'Sequence Match' indicates whether the inference exactly matches the sequence, and clicking on the tick or cross will provide an alignment. Mismatches may be caused, for example, by the inclusion of leader sequences, or nucleotides in the inference which do not in IARC's opinion have sufficient evidence for inclusion in the sequence.

Submission IDAccession NoSubject IDGenotype NameSequence NameSequence Match
S00010 MK471383B16B16IGHV2-70*04_S4496

Observations in VDJbase

Inferred sequences in VDJbase that match this sequence:

VDJbase Allele NameSubjectsSequence Match
IGHV2-70*04_c6t 1

Un-rearranged Observations

Un-rearranged sequence observations that support this sequence:

No Items

CDR delineation

CDR1 Start76
CDR1 End105
CDR2 Start157
CDR2 End177
CDR3 Start292

Non-Core Regions

UTR 5' Start
UTR 5' End
L-PART1 Start
L-PART1 End
L_PART1
L-PART2 Start
L-PART2 End
L_PART2
v_rs_start
v_rs_end
V_HEPTAMER
V_NONAMER

Extension

3' Extension
3' start
3' end
5' start
5' end

Additional Information

Sequence IDA00051
Curator
Curator addressDept. of Immunotechnology, Lund University, Medicon Village building 406, S-22381 Lund, Sweden
Version1
Release Date2023-06-29
Release Notes

Affirmed at IARC meeting 46.

LocusIGH
Sequence TypeV
Gene Subgroup2
Gene Designation70
Allele Designationi02

Acknowledgements

Individuals acknowledged as contributing to this sequence:

NameInstitutionORCID ID
Davide Bagnaradavide.bagnara@edu.unige.it
Martin CorcoranDepartment of Microbiology, Tumor and Cell Biology, Biomedicum, Karolinska Institute, Stockholm Sweden.

Notes

Notes are added by IARC reviewers.

Assessed by IARC on November 18, 2019 during meeting 45 and on December 2, 2019 during meeting 46.

The committee considered IGHV2-70*04_S4496 (C6T) of submission S00010 of Genotype B16, which was previously evaluated as IGHV2-70D*04_S2803 of submission S00006 at Meeting 11. It was affirmed as a Level 0 sequence at that time.

The sequence was seen in just 0.09% of all unmutated rearrangements, with 687 sequences including 252 perfect matches to the inferred allele. There was abundant variation in the CDR3 regions of the aligned sequences. One other IGHV2-70 sequence was present in the genotype, and haplotype data suggests that both these sequences are carried on a single chromosome, one of them possibly located to IGHV2-70D. The rearrangement frequency was above the agreed threshold (0.05%), but In light of the very low frequency of rearrangements seen and the complicated haplotype profile, it was affirmed as a Level 0 sequence. The sequence was affirmed up to and including nucleotide 319 even though alleles of IGHV2-70/IGHV2-70D in general extend up to and including base 322. However, the nucleotide composition of the subsequent three bases of genes associated with this inferred allele did not support their inference. It is however likely that three additional 3’ nucleotides are present in the sequence, and this is indicated in IARC and OGRDB publications by three dots at the end of the sequence.

Attachments

Supplementary Files
 

History

History logs the times and reasons for the publication of each version of this sequence.

Mats Ohlin
2023-06-29 06:36:29
Version 1 published

Affirmed at IARC meeting 46.

Versions

All published versions of this sequence.

Sequence NameIMGT NameAlternative namesInference TypeAffirmation LevelSpecies subgroupSubgroup typeGene startGene endUTR 5' StartUTR 5' EndL-PART1 StartL-PART1 EndL-PART2 StartL-PART2 EndCDR1 StartCDR1 EndCDR2 StartCDR2 EndCDR3 Startv_rs_startv_rs_endd_rs_3_prime_startd_rs_3_prime_endd_rs_5_prime_startd_rs_5_prime_endj_rs_startj_rs_endCodon FrameVersionDate
IGHV2-70*i02Rearranged0none129876105157177292112023-06-29