Species | Homo sapiens |
Species subgroup | |
Subgroup type | none |
Sequence Name | IGHV2-70*i02 |
IUIS Name | |
Alternative names | |
Affirmation Level | 0 |
Full Sequence | |
Coding Sequence | |
Functionality | F |
Inference Type | Rearranged |
Mapped | False |
Paralogs | |
Paralog Rep | False |
The table below lists submissions to IARC , and the inferences within them, on which this IARC-affirmed sequence is based.
'Sequence Match' indicates whether the inference exactly matches the sequence, and clicking on the tick or cross will provide an alignment. Mismatches may be caused, for example, by the inclusion of leader sequences, or nucleotides in the inference which do not in IARC's opinion have sufficient evidence for inclusion in the sequence.
Submission ID | Accession No | Subject ID | Genotype Name | Sequence Name | Sequence Match |
---|---|---|---|---|---|
S00010 | MK471383 | B16 | B16 | IGHV2-70*04_S4496 |
Inferred sequences in VDJbase that match this sequence:
VDJbase Allele Name | Subjects | Sequence Match |
---|---|---|
IGHV2-70*04_c6t | 1 |
Un-rearranged sequence observations that support this sequence:
CDR1 Start | 76 |
CDR1 End | 105 |
CDR2 Start | 157 |
CDR2 End | 177 |
CDR3 Start | 292 |
UTR 5' Start | |
UTR 5' End | |
L-PART1 Start | |
L-PART1 End | |
L_PART1 | |
L-PART2 Start | |
L-PART2 End | |
L_PART2 | |
v_rs_start | |
v_rs_end | |
V_HEPTAMER | |
V_NONAMER |
3' Extension | |
3' start | |
3' end | |
5' start | |
5' end |
Sequence ID | A00051 |
Curator | |
Curator address | Dept. of Immunotechnology, Lund University, Medicon Village building 406, S-22381 Lund, Sweden |
Version | 1 |
Release Date | 2023-06-29 |
Release Notes | Affirmed at IARC meeting 46. |
Locus | IGH |
Sequence Type | V |
Gene Subgroup | 2 |
Gene Designation | 70 |
Allele Designation | i02 |
Gene start | 1 |
Gene end | 298 |
Notes are added by IARC reviewers.
Assessed by IARC on November 18, 2019 during meeting 45 and on December 2, 2019 during meeting 46. The committee considered IGHV2-70*04_S4496 (C6T) of submission S00010 of Genotype B16, which was previously evaluated as IGHV2-70D*04_S2803 of submission S00006 at Meeting 11. It was affirmed as a Level 0 sequence at that time. The sequence was seen in just 0.09% of all unmutated rearrangements, with 687 sequences including 252 perfect matches to the inferred allele. There was abundant variation in the CDR3 regions of the aligned sequences. One other IGHV2-70 sequence was present in the genotype, and haplotype data suggests that both these sequences are carried on a single chromosome, one of them possibly located to IGHV2-70D. The rearrangement frequency was above the agreed threshold (0.05%), but In light of the very low frequency of rearrangements seen and the complicated haplotype profile, it was affirmed as a Level 0 sequence. The sequence was affirmed up to and including nucleotide 319 even though alleles of IGHV2-70/IGHV2-70D in general extend up to and including base 322. However, the nucleotide composition of the subsequent three bases of genes associated with this inferred allele did not support their inference. It is however likely that three additional 3’ nucleotides are present in the sequence, and this is indicated in IARC and OGRDB publications by three dots at the end of the sequence. |
History logs the times and reasons for the publication of each version of this sequence.
Mats Ohlin 2023-06-29 06:36:29 | Version 1 published Affirmed at IARC meeting 46. |
All published versions of this sequence.
Sequence Name | IMGT Name | Version | Date |
---|---|---|---|
IGHV2-70*i02 | 1 | 2023-06-29 |