Genotype 'B16' (Submission S00010)
| Sample | Title |
|---|---|
| SAMN06675657 | B16 |
| Record Set | Title |
|---|---|
| SRR5408024 | Other Sequencing of human |
Allele names in italic are not listed in the reference set. Allele names in bold are put forward in the submission for consideration as inferred sequences.
A cross in the Sequence column indicates that the sequence listed in the genotype does not match the sequence of the corresponding allele in the reference set.
An information icon in the Sequence column alerts you to other information on this sequence - hover over for details.
Novel Alleles
Allele name | Sequences | Closest Reference | Closest in Host | NT Diffs (reference) | NT Diffs (host) | NT Substs (reference) | AA Diffs (reference) | AA Substs (reference) | Sequence |
|---|---|---|---|---|---|---|---|---|---|
| IGHV1-3*01_S7363 | 8630 | IGHV1-3*04 | IGHV1-3*01 | 0 | 1 | -301G,-302T,-303G,-304T,-305A,-306T,-307T,-308A,-309C,-310T,-311G,-312T,-313G,-314C,-315G,-316A,-317G,-318A,-319G,-320A | 6 | -101V,-102Y,-103Y,-104C,-105A,-106R | |
| IGHV1-45*02_E0526 | 66 | IGHV1-45*02 | IGHV1-45*02 | 3 | 3 | A297G,A301G,A315G,A320- | 1 | M101V | |
| IGHV1-69-2*01_S0318 | 1260 | IGHV1-69-2*02 | IGHV1-69-2*01 | 0 | 1 | -292G,-293A,-294C,-295A,-296C,-297G,-298G,-299C,-300C,-301G,-302T,-303G,-304T,-305A,-306T,-307T,-308A,-309C,-310T,-311G,-312T,-313G,-314C,-315A,-316A,-317C,-318A,-319G,-320A | 21 | X1E,X2V,X3Q,X4L,X5V,X6Q,X7S,X8G,X9A,X11E,X12V,X13K,-98D,-99T,-100A,-101V,-102Y,-103Y,-104C,-105A,-106T | |
| IGHV1-69*01_S7220 | 53668 | IGHV1-69*07 | IGHV1-69*11 | 0 | 2 | -292G,-293A,-294C,-295A,-296C,-297G,-298G,-299C,-300C,-301G,-302T,-303G,-304T,-305A,-306T,-307T,-308A,-309C,-310T,-311G,-312T,-313G,-314C,-315G,-316A,-317G,-318A,-319G,-320A | 21 | X1Q,X2V,X3Q,X4L,X5V,X6Q,X7S,X8G,X9A,X11E,X12V,X13K,-98D,-99T,-100A,-101V,-102Y,-103Y,-104C,-105A,-106R | |
| IGHV2-70*04_S4496 | 687 | IGHV2-70*04 | IGHV2-70*15 | 1 | 4 | C6T | 0 | ||
| IGHV3-9*01_S6471 | 10337 | IGHV3-9*01 | IGHV3-9*01 | 2 | 2 | T194C,C198T | 1 | I65T | |
| IGHV3-20*01_S2478 | 4259 | IGHV3-20*04 | IGHV3-9*01 | 0 | 20 | 0 | |||
| IGHV4-4*01_S9465 | 5055 | IGHV4-4*03 | IGHV4-39*07 | 0 | 16 | -320A | 0 | ||
| IGHV4-4*08_S8301 | 12648 | IGHV4-4*08 | IGHV4-59*01 | 2 | 5 | T165C,C237A | 0 | ||
| IGHV4-28*01_E9834 | 115 | IGHV4-28*01 | IGHV4-38-2*01 | 1 | 14 | C210T,A320- | 0 | ||
| IGHV4-30-4*01_S4754 | 10107 | IGHV4-30-4*08 | IGHV4-31*01 | 0 | 6 | -320A | 0 | ||
| IGHV4-59*01_S8652 | 18133 | IGHV4-59*11 | IGHV4-59*01 | 0 | 1 | 0 | |||
| IGHV4-61*01_S5549 | 11785 | IGHV4-61*01 | IGHV4-59*01 | 2 | 4 | C136G,A138C | 1 | P46A |
Genotype
Allele name | Sequences | Unmutated Seqs | Unmutated % within allele | Unmutated UMIs | Allelic % | Total unmutated population (%) | Unique CDR3s | Unique CDR3s with unmutated | Haplotyping Gene | Haplotyping Ratio | Sequence |
|---|---|---|---|---|---|---|---|---|---|---|---|
| IGHV1-2*02 | 19879 | 7692 | 38.69 | 86.00 | 2.73 | 6535 | 2020 | IGHJ6 | 86:14 | ||
| IGHV1-2*04 | 3202 | 1369 | 42.75 | 14.00 | 0.49 | 1240 | 429 | IGHJ6 | 26:74 | ||
| IGHV1-3*01 | 6347 | 2456 | 38.70 | 42.00 | 0.87 | 2486 | 662 | IGHJ6 | 25:75 | ||
| IGHV1-3*01_S7363 | 8630 | 3256 | 37.73 | 58.00 | 1.16 | 3113 | 865 | IGHJ6 | 81:19 | ||
| IGHV1-8*01 | 4417 | 1863 | 42.18 | 39.00 | 0.66 | 1886 | 623 | IGHJ6 | 88:12 | ||
| IGHV1-8*02 | 6807 | 2452 | 36.02 | 61.00 | 0.87 | 2859 | 819 | IGHJ6 | 24:76 | ||
| IGHV1-18*01 | 29702 | 12680 | 42.69 | 100.00 | 4.50 | 8873 | 2809 | IGHJ6 | 60:40 | ||
| IGHV1-24*01 | 7745 | 2973 | 38.39 | 100.00 | 1.06 | 2809 | 603 | IGHJ6 | 64:36 | ||
| IGHV1-45*02 | 90 | 37 | 41.11 | 58.00 | 0.01 | 34 | 8 | IGHJ6 | 44:56 | ||
| IGHV1-45*02_E0526 | 66 | 8 | 12.12 | 42.00 | 0.00 | 65 | 8 | IGHJ6 | 67:33 | ||
| IGHV1-46*01 | 16025 | 6903 | 43.08 | 100.00 | 2.45 | 5379 | 1867 | IGHJ6 | 60:40 | ||
| IGHV1-58*02 | 1230 | 366 | 29.76 | 100.00 | 0.13 | 521 | 83 | IGHJ6 | 27:73 | ||
| IGHV1-69-2*01 | 7658 | 3015 | 39.37 | 86.00 | 1.07 | 2779 | 694 | IGHJ6 | 84:16 | ||
| IGHV1-69*02 | 11112 | 5409 | 48.68 | 10.00 | 1.92 | 3986 | 1436 | IGHJ6 | 86:14 | ||
| IGHV1-69-2*01_S0318 | 1260 | 487 | 38.65 | 14.00 | 0.17 | 496 | 129 | IGHJ6 | 24:76 | ||
| IGHV1-69*01_S7220 | 53668 | 22586 | 42.08 | 47.00 | 8.02 | 13884 | 4504 | IGHJ6 | 75:25 | ||
| IGHV1-69*11 | 22754 | 12050 | 52.96 | 20.00 | 4.28 | 7574 | 2952 | IGHJ6 | 22:78 | ||
| IGHV1-69*12 | 27263 | 15256 | 55.96 | 24.00 | 5.42 | 8604 | 3528 | IGHJ6 | 16:84 | ||
| IGHV2-5*01 | 3106 | 1667 | 53.67 | 39.00 | 0.59 | 905 | 448 | IGHJ6 | 6:94 | ||
| IGHV2-5*02 | 4835 | 2508 | 51.87 | 61.00 | 0.89 | 1225 | 605 | IGHJ6 | 71:29 | ||
| IGHV2-26*01 | 2598 | 1307 | 50.31 | 100.00 | 0.46 | 743 | 354 | IGHJ6 | 44:56 | ||
| IGHV2-70*15 | 1384 | 601 | 43.42 | 67.00 | 0.21 | 497 | 184 | IGHJ6 | 4:96 | ||
| IGHV2-70*04_S4496 | 687 | 252 | 36.68 | 33.00 | 0.09 | 239 | 86 | IGHJ6 | 7:93 | ||
| IGHV3-7*01 | 5326 | 2359 | 44.29 | 48.00 | 0.84 | 2164 | 796 | IGHJ6 | 18:82 | ||
| IGHV3-7*03 | 5684 | 2356 | 41.45 | 52.00 | 0.84 | 2131 | 705 | IGHJ6 | 88:12 | ||
| IGHV3-9*01 | 9488 | 3553 | 37.45 | 48.00 | 1.26 | 3606 | 723 | IGHJ6 | 27:73 | ||
| IGHV3-9*01_S6471 | 10337 | 4086 | 39.53 | 52.00 | 1.45 | 3890 | 873 | IGHJ6 | 86:14 | ||
| IGHV3-11*01 | 5485 | 2491 | 45.41 | 46.00 | 0.88 | 2154 | 638 | IGHJ6 | 15:85 | ||
| IGHV3-11*04 | 6361 | 2437 | 38.31 | 54.00 | 0.87 | 2643 | 718 | IGHJ6 | 81:19 | ||
| IGHV3-13*01 | 1894 | 646 | 34.11 | 100.00 | 0.23 | 751 | 158 | IGHJ6 | 67:33 | ||
| IGHV3-15*01 | 9741 | 4291 | 44.05 | 100.00 | 1.52 | 2692 | 982 | IGHJ6 | 51:49 | ||
| IGHV3-20*01_S2478 | 4259 | 1321 | 31.02 | 100.00 | 0.47 | 1800 | 346 | IGHJ6 | 30:70 | ||
| IGHV3-21*01 | 24406 | 10809 | 44.29 | 100.00 | 3.84 | 7499 | 2455 | IGHJ6 | 57:43 | ||
| IGHV3-23*01 | 36996 | 14791 | 39.98 | 100.00 | 5.25 | 10513 | 2475 | IGHJ6 | 54:46 | ||
| IGHV3-30-3*01 | 13538 | 6048 | 44.67 | 100.00 | 2.15 | 5099 | 1640 | IGHJ6 | 23:77 | ||
| IGHV3-30*01 | 15152 | 6327 | 41.76 | 53.00 | 2.25 | 5900 | 1882 | IGHJ6 | 84:16 | ||
| IGHV3-30*02 | 13556 | 5593 | 41.26 | 47.00 | 1.99 | 4872 | 1240 | IGHJ6 | 19:81 | ||
| IGHV3-33*01 | 2500 | 541 | 21.64 | 26.00 | 0.19 | 1929 | 376 | IGHJ6 | 64:36 | ||
| IGHV3-33*06 | 6947 | 3410 | 49.09 | 74.00 | 1.21 | 1884 | 732 | IGHJ6 | 95:5 | ||
| IGHV3-43*01 | 1273 | 525 | 41.24 | 100.00 | 0.19 | 495 | 115 | IGHJ6 | 87:13 | ||
| IGHV3-48*01 | 5952 | 2330 | 39.15 | 37.00 | 0.83 | 2439 | 630 | IGHJ6 | 17:83 | ||
| IGHV3-48*04 | 10276 | 3845 | 37.42 | 63.00 | 1.37 | 3812 | 1093 | IGHJ6 | 84:16 | ||
| IGHV3-49*03 | 1324 | 607 | 45.85 | 50.00 | 0.22 | 522 | 172 | IGHJ6 | 80:20 | ||
| IGHV3-49*04 | 1330 | 537 | 40.38 | 50.00 | 0.19 | 522 | 166 | IGHJ6 | 15:85 | ||
| IGHV3-53*01 | 4064 | 1481 | 36.44 | 58.00 | 0.53 | 1834 | 352 | IGHJ6 | 21:79 | ||
| IGHV3-53*04 | 2950 | 1254 | 42.51 | 42.00 | 0.45 | 1106 | 263 | IGHJ6 | 91:9 | ||
| IGHV3-64*01 | 1702 | 725 | 42.60 | 100.00 | 0.26 | 698 | 218 | IGHJ6 | 52:48 | ||
| IGHV3-66*02 | 5440 | 2024 | 37.21 | 100.00 | 0.72 | 2194 | 526 | IGHJ6 | 86:14 | ||
| IGHV3-72*01 | 572 | 170 | 29.72 | 100.00 | 0.06 | 226 | 54 | IGHJ6 | 66:34 | ||
| IGHV3-73*01 | 2589 | 1024 | 39.55 | 100.00 | 0.36 | 855 | 235 | IGHJ6 | 65:35 | ||
| IGHV3-74*01 | 4281 | 1432 | 33.45 | 100.00 | 0.51 | 1888 | 394 | IGHJ6 | 65:35 | ||
| IGHV3-43D*04 | 768 | 279 | 36.33 | 100.00 | 0.10 | 306 | 66 | IGHJ6 | 7:93 | ||
| IGHV4-4*01_S9465 | 5055 | 1724 | 34.10 | 29.00 | 0.61 | 2534 | 536 | IGHJ6 | 75:25 | ||
| IGHV4-4*08_S8301 | 12648 | 5107 | 40.38 | 71.00 | 1.81 | 4628 | 1251 | IGHJ6 | 81:19 | ||
| IGHV4-28*01_E9834 | 115 | 43 | 37.39 | 100.00 | 0.02 | 72 | 15 | IGHJ6 | 22:78 | ||
| IGHV4-30-4*01_S4754 | 10107 | 3366 | 33.30 | 100.00 | 1.20 | 3864 | 527 | IGHJ6 | 22:78 | ||
| IGHV4-31*01 | 3196 | 1255 | 39.27 | 100.00 | 0.45 | 1345 | 281 | IGHJ6 | 71:29 | ||
| IGHV4-34*01 | 45330 | 20364 | 44.92 | 100.00 | 7.23 | 12156 | 3868 | IGHJ6 | 51:49 | ||
| IGHV4-38-2*01 | 16143 | 6261 | 38.78 | 100.00 | 2.22 | 6063 | 1639 | IGHJ6 | 29:71 | ||
| IGHV4-39*07 | 19695 | 6938 | 35.23 | 100.00 | 2.46 | 7196 | 1830 | IGHJ6 | 74:26 | ||
| IGHV4-59*01 | 18869 | 8236 | 43.65 | 51.00 | 2.92 | 6662 | 2149 | IGHJ6 | 19:81 | ||
| IGHV4-59*01_S8652 | 18133 | 8545 | 47.12 | 49.00 | 3.03 | 6237 | 2073 | IGHJ6 | 77:23 | ||
| IGHV4-61*01_S5549 | 11785 | 4732 | 40.15 | 100.00 | 1.68 | 4841 | 1534 | IGHJ6 | 21:79 | ||
| IGHV5-51*01 | 26630 | 13659 | 51.29 | 100.00 | 4.85 | 5012 | 1853 | IGHJ6 | 59:41 | ||
| IGHV6-1*01 | 918 | 382 | 41.61 | 100.00 | 0.14 | 315 | 75 | IGHJ6 | 7:93 | ||
| IGHV7-4-1*02 | 15263 | 6500 | 42.59 | 100.00 | 2.31 | 3581 | 1431 | IGHJ6 | 51:49 | ||
| Totals | 658543 | 281597 | 42.76 | 1634:-1534 |