Species | Homo sapiens |
Species subgroup | |
Subgroup type | |
Sequence Name | IGHV4-61*i01 |
IUIS Name | |
Alternative names | |
Affirmation Level | 0 |
Full Sequence | |
Coding Sequence | |
Functionality | F |
Inference Type | Rearranged Only |
Mapped | |
Paralogs | |
Paralog Rep |
The table below lists submissions to IARC , and the inferences within them, on which this IARC-affirmed sequence is based.
'Sequence Match' indicates whether the inference exactly matches the sequence, and clicking on the tick or cross will provide an alignment. Mismatches may be caused, for example, by the inclusion of leader sequences, or nucleotides in the inference which do not in IARC's opinion have sufficient evidence for inclusion in the sequence.
Submission ID | Accession No | Subject ID | Genotype Name | Sequence Name | Sequence Match |
---|---|---|---|---|---|
S00010 | MK471380 | B12 | B12 | IGHV4-61*01_S7407 |
Inferred sequences in VDJbase that match this sequence:
VDJbase Allele Name | Subjects | Sequence Match |
---|---|---|
IGHV4-61*10_c93t | 1 |
Un-rearranged sequence observations that support this sequence:
CDR1 Start | 76 |
CDR1 End | 105 |
CDR2 Start | 157 |
CDR2 End | 177 |
CDR3 Start | 292 |
Sequence ID | A00046 |
Curator | |
Curator address | Dept. of Immunotechnology, Lund University, Medicon Village building 406, S-22381 Lund, Sweden |
Version | 1 |
Release Date | 2019-12-12 |
Release Notes | Submission published by IARC on Dec 13, 2019. |
Locus | IGH |
Sequence Type | V |
Gene Subgroup | 4 |
Gene Designation | 61 |
Allele Designation | i01 |
Gene start | 1 |
Gene end | 298 |
Notes are added by IARC reviewers.
Assessed by IARC on November 18, 2019 during meeting 45. The committee considered IGHV4-61*01_S7407 (C93T, C136G, A138C) of Genotype B12 of submission S00010, which was previously evaluated as IGHV4-61*01_S9594 of submission S00004 at Meeting 10. It was affirmed as a Level 0 sequence at that time. The sequence was seen in 0.93% of all unmutated rearrangements, with 5928 sequences including 1572 perfect matches to the inferred allele. There was abundant variation in the CDR3 regions of the aligned sequences. Two other alleles were present in the genotype, with IGHV4-61*01 and IGHV4-61*02 also being present in the haplotype with this allele. Haplotype data is generally supportive of the inference, but in light of the complex structural variation seen in this particular individual, such a duplication is not an unlikely event. However based on this complexity and the similarities of IGHV4-4, IGHV4-59 and IGHV4-61 sequences, the sequence was affirmed as a Level 0 sequence. In line with IARC policy, the submitted sequence was recognized up to and including nucleotide 319. It is likely that one additional 3’ nucleotide is present in the sequence, and this is indicated in IARC and OGRDB publications by one dot at the end of the sequence. |
History logs the times and reasons for the publication of each version of this sequence.
Andrew Collins 2019-12-12 22:51:58 | Version 1 published Submission published by IARC on Dec 13, 2019. |
All published versions of this sequence.
Sequence Name | IMGT Name | Version | Date |
---|---|---|---|
IGHV4-61*i01 | 1 | 2019-12-12 |