Genotype 'B12' (Submission S00010)
| Sample | Title |
|---|---|
| SAMN06675654 | B12 |
| Record Set | Title |
|---|---|
| SRR5408027 | Other Sequencing of human |
Allele names in italic are not listed in the reference set. Allele names in bold are put forward in the submission for consideration as inferred sequences.
A cross in the Sequence column indicates that the sequence listed in the genotype does not match the sequence of the corresponding allele in the reference set.
An information icon in the Sequence column alerts you to other information on this sequence - hover over for details.
Novel Alleles
Allele name | Sequences | Closest Reference | Closest in Host | NT Diffs (reference) | NT Diffs (host) | NT Substs (reference) | AA Diffs (reference) | AA Substs (reference) | Sequence |
|---|---|---|---|---|---|---|---|---|---|
| IGHV1-69*14_S5279 | 11849 | IGHV1-69*07 | IGHV1-69*06 | 1 | 2 | G244A,-292G,-293A,-294C,-295A,-296C,-297G,-298G,-299C,-300C,-301G,-302T,-303G,-304T,-305A,-306T,-307T,-308A,-309C,-310T,-311G,-312T,-313G,-314C,-315G,-316A,-317G,-318A,-319G,-320A | 22 | X1Q,X2V,X3Q,X4L,X5V,X6Q,X7S,X8G,X9A,X11E,X12V,X13K,E82K,-98D,-99T,-100A,-101V,-102Y,-103Y,-104C,-105A,-106R | |
| IGHV2-70*01_S6619 | 296 | IGHV2-70*01 | IGHV2-70*01 | 1 | 1 | A124G | 1 | I42V | |
| IGHV3-9*01_S3669 | 9815 | IGHV3-9*01 | IGHV3-20*01 | 1 | 22 | C246T | 0 | ||
| IGHV3-53*02_S3204 | 709 | IGHV3-53*02 | IGHV3-53*01 | 1 | 2 | A172G | 1 | S58G | |
| IGHV3-64*01_S8750 | 731 | IGHV3-64*07 | IGHV3-64*01 | 0 | 1 | 0 | |||
| IGHV3-64*04_E4873 | 839 | IGHV3-64*04 | IGHV3-64D*06 | 6 | 7 | C1G,A210C,T288C,T300C,G303A,G317A | 2 | Q1E,R106K | |
| IGHV3-43D*04_S6360 | 128 | IGHV3-43D*04 | IGHV3-43*01 | 1 | 4 | C53T | 1 | S18F | |
| IGHV4-61*01_S7407 | 5928 | IGHV4-59*02 | IGHV4-61*01 | 3 | 3 | A103G,C136G,A138C | 4 | X31S,X34S,S35G,P46A |
Genotype
Allele name | Sequences | Unmutated Seqs | Unmutated % within allele | Unmutated UMIs | Allelic % | Total unmutated population (%) | Unique CDR3s | Unique CDR3s with unmutated | Haplotyping Gene | Haplotyping Ratio | Sequence |
|---|---|---|---|---|---|---|---|---|---|---|---|
| IGHV1-2*04 | 3517 | 1206 | 34.29 | 30.00 | 0.71 | 1548 | 347 | IGHJ6 | 92:8 | ||
| IGHV1-2*06 | 8297 | 2852 | 34.37 | 70.00 | 1.68 | 3360 | 796 | IGHJ6 | 14:86 | ||
| IGHV1-3*01 | 10999 | 3337 | 30.34 | 100.00 | 1.97 | 4167 | 953 | IGHJ6 | 43:57 | ||
| IGHV1-8*01 | 4251 | 1653 | 38.88 | 100.00 | 0.98 | 2041 | 530 | IGHJ6 | 7:93 | ||
| IGHV1-18*01 | 6749 | 1848 | 27.38 | 27.00 | 1.09 | 2991 | 551 | IGHJ6 | 23:77 | ||
| IGHV1-18*04 | 18206 | 5998 | 32.95 | 73.00 | 3.54 | 6985 | 1505 | IGHJ6 | 91:9 | ||
| IGHV1-24*01 | 3547 | 1527 | 43.05 | 100.00 | 0.90 | 1424 | 337 | IGHJ6 | 69:31 | ||
| IGHV1-45*02 | 116 | 41 | 35.34 | 100.00 | 0.02 | 60 | 13 | IGHJ6 | 29:71 | ||
| IGHV1-46*01 | 10646 | 2896 | 27.20 | 100.00 | 1.71 | 4254 | 838 | IGHJ6 | 50:50 | ||
| IGHV1-58*01 | 1605 | 459 | 28.60 | 52.00 | 0.27 | 708 | 106 | IGHJ6 | 93:7 | ||
| IGHV1-58*02 | 1463 | 467 | 31.92 | 48.00 | 0.28 | 625 | 124 | IGHJ6 | 28:72 | ||
| IGHV1-69-2*01 | 1219 | 477 | 39.13 | 100.00 | 0.28 | 563 | 146 | IGHJ6 | 44:56 | ||
| IGHV1-69*01 | 22415 | 9884 | 44.10 | 37.00 | 5.83 | 8395 | 2308 | IGHJ6 | 89:11 | ||
| IGHV1-69*06 | 16611 | 6487 | 39.05 | 27.00 | 3.83 | 6716 | 1669 | IGHJ6 | 86:14 | ||
| IGHV1-69*13 | 10026 | 4335 | 43.24 | 16.00 | 2.56 | 4323 | 1135 | IGHJ6 | 21:79 | ||
| IGHV1-69*14_S5279 | 11849 | 3889 | 32.82 | 19.00 | 2.29 | 5195 | 1050 | IGHJ6 | 16:84 | ||
| IGHV2-5*02 | 2850 | 954 | 33.47 | 100.00 | 0.56 | 1192 | 328 | IGHJ6 | 31:69 | ||
| IGHV2-26*01 | 1769 | 743 | 42.00 | 100.00 | 0.44 | 702 | 225 | IGHJ6 | 70:30 | ||
| IGHV2-70*01 | 1112 | 433 | 38.94 | 38.00 | 0.26 | 500 | 139 | IGHJ6 | 99:1 | ||
| IGHV2-70*04 | 1502 | 407 | 27.10 | 52.00 | 0.24 | 590 | 129 | IGHJ6 | 63:37 | ||
| IGHV2-70*01_S6619 | 296 | 93 | 31.42 | 10.00 | 0.05 | 158 | 33 | IGHJ6 | 24:76 | ||
| IGHV3-7*03 | 15320 | 3583 | 23.39 | 100.00 | 2.11 | 5979 | 1004 | IGHJ6 | 50:50 | ||
| IGHV3-9*01_S3669 | 9815 | 2310 | 23.54 | 100.00 | 1.36 | 3864 | 545 | IGHJ6 | 21:79 | ||
| IGHV3-11*01 | 6894 | 1735 | 25.17 | 47.00 | 1.02 | 2991 | 420 | IGHJ6 | 12:88 | ||
| IGHV3-11*06 | 7906 | 2203 | 27.86 | 53.00 | 1.30 | 3121 | 607 | IGHJ6 | 93:7 | ||
| IGHV3-13*01 | 765 | 125 | 16.34 | 42.00 | 0.07 | 321 | 42 | IGHJ6 | 42:58 | ||
| IGHV3-13*05 | 1062 | 276 | 25.99 | 58.00 | 0.16 | 469 | 71 | IGHJ6 | 94:6 | ||
| IGHV3-15*01 | 9856 | 2795 | 28.36 | 100.00 | 1.65 | 3299 | 781 | IGHJ6 | 76:24 | ||
| IGHV3-20*01 | 474 | 55 | 11.60 | 100.00 | 0.03 | 192 | 19 | IGHJ6 | 10:90 | ||
| IGHV3-21*01 | 29095 | 8850 | 30.42 | 100.00 | 5.22 | 10048 | 2115 | IGHJ6 | 86:14 | ||
| IGHV3-23*01 | 81549 | 23299 | 28.57 | 100.00 | 13.74 | 23684 | 4588 | IGHJ6 | 81:19 | ||
| IGHV3-30*04 | 11466 | 2593 | 22.61 | 63.00 | 1.53 | 4543 | 754 | IGHJ6 | 16:84 | ||
| IGHV3-30*18 | 6629 | 1469 | 22.16 | 37.00 | 0.87 | 2767 | 414 | IGHJ6 | 95:5 | ||
| IGHV3-33*01 | 19151 | 4888 | 25.52 | 100.00 | 2.88 | 7122 | 1185 | IGHJ6 | 64:36 | ||
| IGHV3-43*01 | 2115 | 624 | 29.50 | 100.00 | 0.37 | 851 | 148 | IGHJ6 | 57:43 | ||
| IGHV3-48*01 | 5244 | 889 | 16.95 | 27.00 | 0.52 | 2641 | 287 | IGHJ6 | 20:80 | ||
| IGHV3-48*02 | 4276 | 1302 | 30.45 | 22.00 | 0.77 | 1411 | 359 | IGHJ6 | 95:5 | ||
| IGHV3-48*03 | 9581 | 2272 | 23.71 | 50.00 | 1.34 | 3933 | 619 | IGHJ6 | 16:84 | ||
| IGHV3-49*03 | 541 | 136 | 25.14 | 24.00 | 0.08 | 253 | 38 | IGHJ6 | 13:87 | ||
| IGHV3-49*04 | 1335 | 226 | 16.93 | 58.00 | 0.13 | 572 | 82 | IGHJ6 | 4:96 | ||
| IGHV3-49*05 | 419 | 112 | 26.73 | 18.00 | 0.07 | 200 | 36 | IGHJ6 | 87:13 | ||
| IGHV3-53*01 | 6449 | 1551 | 24.05 | 57.00 | 0.91 | 2741 | 347 | IGHJ6 | 92:8 | ||
| IGHV3-53*04 | 4098 | 1485 | 36.24 | 36.00 | 0.88 | 1542 | 319 | IGHJ6 | 17:83 | ||
| IGHV3-53*02_S3204 | 709 | 228 | 32.16 | 6.00 | 0.13 | 369 | 50 | IGHJ6 | 36:64 | ||
| IGHV3-64*01 | 684 | 103 | 15.06 | 30.00 | 0.06 | 259 | 28 | IGHJ6 | 8:92 | ||
| IGHV3-64*01_S8750 | 731 | 194 | 26.54 | 32.00 | 0.11 | 301 | 64 | IGHJ6 | 13:87 | ||
| IGHV3-64*04_E4873 | 839 | 55 | 6.56 | 37.00 | 0.03 | 775 | 55 | IGHJ6 | 66:34 | ||
| IGHV3-66*02 | 2559 | 636 | 24.85 | 100.00 | 0.38 | 1098 | 153 | IGHJ6 | 19:81 | ||
| IGHV3-72*01 | 662 | 62 | 9.37 | 100.00 | 0.04 | 245 | 19 | IGHJ6 | 58:42 | ||
| IGHV3-73*02 | 1746 | 478 | 27.38 | 100.00 | 0.28 | 607 | 95 | IGHJ6 | 83:17 | ||
| IGHV3-74*01 | 4930 | 900 | 18.26 | 100.00 | 0.53 | 1980 | 214 | IGHJ6 | 73:27 | ||
| IGHV3-43D*04_S6360 | 128 | 41 | 32.03 | 100.00 | 0.02 | 59 | 11 | IGHJ6 | 16:84 | ||
| IGHV3-64D*06 | 5854 | 1629 | 27.83 | 100.00 | 0.96 | 1990 | 416 | IGHJ6 | 92:8 | ||
| IGHV4-4*02 | 9140 | 2945 | 32.22 | 100.00 | 1.74 | 3998 | 830 | IGHJ6 | 48:52 | ||
| IGHV4-30-2*01 | 1593 | 496 | 31.14 | 100.00 | 0.29 | 724 | 90 | IGHJ6 | 70:30 | ||
| IGHV4-31*03 | 7495 | 2328 | 31.06 | 100.00 | 1.37 | 3193 | 550 | IGHJ6 | 5:95 | ||
| IGHV4-34*01 | 11534 | 4106 | 35.60 | 100.00 | 2.42 | 4867 | 980 | IGHJ6 | 35:65 | ||
| IGHV4-38-2*01 | 2968 | 841 | 28.34 | 100.00 | 0.50 | 1439 | 233 | IGHJ6 | 14:86 | ||
| IGHV4-39*01 | 20353 | 6329 | 31.10 | 71.00 | 3.73 | 6988 | 1559 | IGHJ6 | 45:55 | ||
| IGHV4-39*07 | 8242 | 1669 | 20.25 | 29.00 | 0.98 | 3953 | 453 | IGHJ6 | 14:86 | ||
| IGHV4-59*01 | 31670 | 11172 | 35.28 | 100.00 | 6.59 | 11009 | 2247 | IGHJ6 | 24:76 | ||
| IGHV4-61*01 | 3225 | 825 | 25.58 | 21.00 | 0.49 | 1639 | 243 | IGHJ6 | 59:41 | ||
| IGHV4-61*02 | 6500 | 1723 | 26.51 | 42.00 | 1.02 | 3109 | 508 | IGHJ6 | 7:93 | ||
| IGHV4-61*01_S7407 | 5928 | 1572 | 26.52 | 38.00 | 0.93 | 2831 | 527 | IGHJ6 | 11:89 | ||
| IGHV5-10-1*03 | 18340 | 6606 | 36.02 | 100.00 | 3.90 | 5758 | 1592 | IGHJ6 | 95:5 | ||
| IGHV5-51*01 | 22522 | 6123 | 27.19 | 73.00 | 3.61 | 6889 | 1438 | IGHJ6 | 51:49 | ||
| IGHV5-51*03 | 8298 | 2927 | 35.27 | 27.00 | 1.73 | 3094 | 825 | IGHJ6 | 19:81 | ||
| IGHV6-1*01 | 4022 | 1164 | 28.94 | 100.00 | 0.69 | 1551 | 286 | IGHJ6 | 62:38 | ||
| IGHV7-4-1*02 | 5062 | 1595 | 31.51 | 100.00 | 0.94 | 1777 | 462 | IGHJ6 | 18:82 | ||
| Totals | 558819 | 169511 | 30.33 | 1537:-1437 |