Species | Homo sapiens |
Species subgroup | |
Subgroup type | |
Sequence Name | IGHV4-31*11 |
IUIS Name | IGHV4-31*11 |
Alternative names | IGHV4-31*i01 |
Affirmation Level | 1 |
Full Sequence | |
Coding Sequence | |
Functionality | ORF |
Inference Type | Rearranged Only |
Mapped | False |
Paralogs | |
Paralog Rep | False |
Un-rearranged sequence observations that support this sequence:
Accession | Type | Repository | Start | End |
---|---|---|---|---|
MK321691 | Inferred | GenBank | 1 | 298 |
Click here to review supporting data in VDJbase.
Clicking the link will take you to VDJbase. Open in a new tab if you want to keep this page open. In VDJbase, click on the count in the Apperances column to see a list of samples in which the sequence was found.
CDR1 Start | 76 |
CDR1 End | 105 |
CDR2 Start | 157 |
CDR2 End | 177 |
CDR3 Start | 292 |
3' Extension | A |
3' start | |
3' end |
Sequence ID | A00012 |
Curator | William Lees |
Curator address | Birkbeck College, University of London, Malet Street, London |
Version | 4 |
Release Date | 2023-07-10 |
Release Notes | Bulk upload of sequences for the AIRR-C Human IG germline sets |
Locus | IGH |
Sequence Type | V |
Gene Subgroup | 4 |
Gene Designation | 31 |
Allele Designation | 11 |
Gene start | 1 |
Gene end | 298 |
Notes are added by IARC reviewers.
This sequence represents IGHV4-31*03 A70G in the IMGT numbering system. The committee noted a rearrangement frequency of 0.9%, with 812 alignments including 293 perfect matches to the inferred allele. There was abundant variation in the CDR3 regions of the aligned sequences. There was no alternative allele present in the genotype, but there are published reports (eg Gidoni et al 2019) of a deletion polymorphism involving the IGHV4-31 locus. All members of the committee agreed that the sequence should be accepted as a Level 1 sequence. Sequences have been submitted to SRA/ENA with acession numbers SRR8298743 and SRR8298742. The sequence was affirmed at level 1 at IARC Meeting 32 on March 1, 2019. In line with previous policy, the submitted sequence will be recognized up to and including nucleotide 319. (April 12, 2019) A trailing “.” in the sequence indicates IARC’s opinion that the sequence is likely to contain additional 3’ nucleotides for which there is insufficient evidence to make an affirmation. Additional information for this sequence was imported into OGRDB via bulk update with the following notes: |
History logs the times and reasons for the publication of each version of this sequence.
Andrew Collins 2019-04-02 22:38:37 | Version 1 published Submission published by IARC on April 3, 2019. |
Mats Ohlin 2019-04-12 14:50:24 | Version 2 published A trailing “.” in the sequence indicates IARC’s opinion that the sequence is likely to contain additional 3’ nucleotides for which there is insufficient evidence to make an affirmation. |
Mats Ohlin 2019-05-16 21:53:47 | Version 3 published IMGT allele name added |
William Lees 2023-07-10 11:24:41 | Version 4 published Bulk upload of sequences for the AIRR-C Human IG germline sets |
v3 | v4 | |
---|---|---|
Curator | William Lees | |
Curator address | School of Biotechnology and Biomolecular Sciences, University of New South Wales, Sydney Australia | Birkbeck College, University of London, Malet Street, London |
Sequence Name | IGHV4-31*i01 | IGHV4-31*11 |
Alternative names | IGHV4-31*p13 | IGHV4-31*i01 |
Mapped | False | |
Functionality | F | ORF |
Species subgroup | ||
Subgroup type | ||
Allele Designation | i01 | 11 |
Full Sequence | ||
Gene start | 1 | |
Gene end | 298 | |
CDR1 Start | 76 | |
CDR1 End | 105 | |
CDR2 Start | 157 | |
CDR2 End | 177 | |
CDR3 Start | 292 | |
Paralog Rep | False | |
Extension? | False | True |
3' Extension | A | |
5' Extension | ||
curational_tags | likely_full-length | |
Notes | changed |
All published versions of this sequence.
Sequence Name | IMGT Name | Version | Date |
---|---|---|---|
IGHV4-31*i01 | 1 | 2019-04-02 | |
IGHV4-31*i01 | 2 | 2019-04-12 | |
IGHV4-31*i01 | IGHV4-31*11 | 3 | 2019-05-16 |
IGHV4-31*11 | IGHV4-31*11 | 4 | 2023-07-10 |