Species | Homo sapiens |
Species subgroup | |
Subgroup type | none |
Sequence Name | IGHV3-43D*i02 |
IUIS Name | |
Alternative names | IGHV3-43D*04 G4A |
Affirmation Level | 1 |
Full Sequence | |
Coding Sequence | |
Functionality | F |
Inference Type | Rearranged |
Mapped | |
Paralogs | |
Paralog Rep |
Inferred sequences in VDJbase that match this sequence:
VDJbase Allele Name | Subjects | Sequence Match |
---|---|---|
IGHV3-43D*04_g4a | 1 |
Un-rearranged sequence observations that support this sequence:
CDR1 Start | 76 |
CDR1 End | 99 |
CDR2 Start | 151 |
CDR2 End | 174 |
CDR3 Start | 289 |
UTR 5' Start | |
UTR 5' End | |
L-PART1 Start | |
L-PART1 End | |
L_PART1 | |
L-PART2 Start | |
L-PART2 End | |
L_PART2 | |
v_rs_start | |
v_rs_end | |
V_HEPTAMER | |
V_NONAMER |
3' Extension | |
3' start | |
3' end | |
5' start | |
5' end |
Sequence ID | A02558 |
Curator | Mats Ohlin |
Curator address | Dept. of Immunotechnology, Lund University, Medicon Village building 406, S-22381 Lund, Sweden |
Version | 1 |
Release Date | 2022-07-25 |
Release Notes | The allele was published by IARC on July 25th, 2022. |
Locus | IGH |
Sequence Type | V |
Gene Subgroup | 3 |
Gene Designation | 3-43D |
Allele Designation | i02 |
Gene start | 1 |
Gene end | 297 |
Notes are added by IARC reviewers.
This inferred allele was assessed at IARC meeting 100 on June 8th, 2022. IGHV3-43D*04_G4A was inferred in subject S10 (VDJ-base: P1_I10_S1). The genotype also carried IGHV3-43*01 but no other allele of IGHV3-43D. The inference was supported by a relatively small number of sequences (104) and unmutated sequences (93), a low overall frequency in the unmutated population (0.3%) and a small but diverse set of unique CDR3s (89) in the unmutated sequence set. Its allelic ratio was 100%. Haplotyping based on allelic diversity in IGHJ6 was possible and the alleles distributed to one haplotype, a haplotype different from that associated with the allele IGHV3-43 (IGHV3-43D*04_G4A: 100:0; IGHV3-43*01: 0:100). Reads of IGHV3-43D*04_G4A were associated to the same haplotype as those of IGHV4-38-2, a common duplication combination. Reads of IGHV3-43D*04_G4A were associated to an upstream region similar to that of other alleles of IGHV3-43D (but not similar to alleles of IGHV3-43) (doi: 10.3389/fimmu.2021.730105). Altogether, the association of this allele to IGHV3-43D is reasonable. IARC affirms the sequence at level 1 up to and including base 321 in agreement with past practice. It is acknowledged that the allele most likely carries one additional base, typically A at base position 322. A trailing “.” indicates IARC’s opinion that the sequence is likely to contain one additional 3’-nucleotides for which there is insufficient evidence to make an affirmation. The allele is given the name IGHV3-43D*i02. |
History logs the times and reasons for the publication of each version of this sequence.
Mats Ohlin 2022-07-25 10:53:31 | Version 1 published The allele was published by IARC on July 25th, 2022. |
All published versions of this sequence.
Sequence Name | IMGT Name | Version | Date |
---|---|---|---|
IGHV3-43D*i02 | 1 | 2022-07-25 | |
IGHV3-43D*i02 | 2 | 2023-07-10 | |
IGHV3-43D*05 | IGHV3-43D*05 | 3 | 2024-01-11 |