Details

SpeciesHomo sapiens
Species subgroup
Subgroup type
Sequence NameIGHV3-7*i01
IUIS Name
Alternative names
Affirmation Level0
Full Sequence
Coding Sequence
FunctionalityF
Inference TypeRearranged Only
Mapped
Paralogs
Paralog Rep

Un-rearranged Observations

Un-rearranged sequence observations that support this sequence:

No Items

Observations in AIRR-seq Repertoires

Click here to review supporting data in VDJbase.

Clicking the link will take you to VDJbase. Open in a new tab if you want to keep this page open. In VDJbase, click on the count in the Apperances column to see a list of samples in which the sequence was found.

CDR delineation

CDR1 Start
CDR1 End
CDR2 Start
CDR2 End
CDR3 Start

Additional Information

Sequence IDA00006
Curator
Curator addressSchool of Biotechnology and Biomolecular Sciences, University of New South Wales, Sydney Australia
Version1
Release Date2019-01-01
Release Notes

As noted at the IARC meeting on May 11, 2018, the IGHV3-7*01 sequence is established at level 0.

LocusIGH
Sequence TypeV
Gene Subgroup3
Gene Designation7
Allele Designationi01
Gene start
Gene end

Acknowledgements

Individuals acknowledged as contributing to this sequence:

NameInstitutionORCID ID
Linnea ThörnqvistDept. of Immunotechnology, Lund University, Lund, Sweden

Notes

Notes are added by IARC reviewers.

Originally assessed by IARC on May 11, 2018.

“The sequence is present at a moderate frequency (0.5%), in the IgDiscover analysis. No information was provided by the submitter regarding analysis with partis or TIgGER. Haplotype analysis could not be performed. Analysis for chimerism did not provide evidence against the existence of the sequence.
Extensive analysis was submitted, including four additional IgDiscover analyses using modified germline gene reference datasets. Although IARC were strongly persuaded by the submitted data, it was agreed that the sequence should be moved to Level 0. Issues relating to the end nucleotides deserve wider discussion by the Working Group before IMGT is notified of such a potentially controversial decision. This will be raised by AC at the forthcoming WG meeting.”

It has been noted that neither partis not TIgGER had been able to infer IGHV3-7*02 or any variant thereof while these tools inferred IGHV3-7*01 (see supplementary information privided with the submission ).

Attachments

No Items

History

History logs the times and reasons for the publication of each version of this sequence.

Mats Ohlin
2019-01-01 22:47:01
Version 1 published

As noted at the IARC meeting on May 11, 2018, the IGHV3-7*01 sequence is established at level 0.

Versions

All published versions of this sequence.

Sequence NameIMGT NameVersionDate
IGHV3-7*i0112019-01-01
IGHV3-7*i0122019-04-12
IGHV3-7*i0132019-10-31
IGHV3-7*i01IGHV3-7*0442019-11-26
IGHV3-7*04IGHV3-7*0452023-07-10