Details

SpeciesHomo sapiens
Species subgroup
Subgroup typenone
Sequence NameIGKJ2*04
IUIS NameIGKJ2*04
Alternative names
Affirmation Level1
Full Sequence
Coding Sequence
FunctionalityORF
Inference TypeUnrearranged and Rearranged
MappedTrue
Paralogs
Paralog RepFalse

Un-rearranged Observations

Un-rearranged sequence observations that support this sequence:

AccessionTypeRepositoryStartEnd
GRCh38:NC_000002.12LocationalGenBank13779471377870

Observations in AIRR-seq Repertoires

Click here to review supporting data in VDJbase.

Clicking the link will take you to VDJbase. Open in a new tab if you want to keep this page open. In VDJbase, click on the count in the Apperances column to see a list of samples in which the sequence was found.

Non-Core Regions

j_rs_start1
j_rs_end39
J_HEPTAMERCATTGTG
J_NONAMERAGTTTTTGT

Additional Information

Sequence IDA02791
CuratorWilliam Lees
Curator addressBirkbeck College, University of London, Malet Street, London
Version3
Release Date2024-10-12
Release Notes

J gene metadata updated to conform to MiAIRR standards

LocusIGK
Sequence TypeJ
Gene Subgroup2
Gene Designation
Allele Designation04
Gene start40
Gene end78
Codon Frame3
J CDR3 End9

Acknowledgements

Individuals acknowledged as contributing to this sequence:

No Items

Notes

Notes are added by IARC reviewers.

Information for this sequence was imported into OGRDB via bulk update with the following notes:
Sequence annotation is based on Genbank sample GRCh38:NC_000002.12
VDJbase example haplotype: P1_I11

Attachments

No Items

History

History logs the times and reasons for the publication of each version of this sequence.

William Lees
2023-07-10 11:24:42
Version 1 published

Bulk upload of sequences for the AIRR-C Human IG germline sets

William Lees
2023-07-18 11:16:23
Version 2 published

co-ordinates wrongly defined by annotation software

William Lees
2024-10-12 11:14:12
Version 3 published

J gene metadata updated to conform to MiAIRR standards

Changes from previous version

v2v3
Codon Frame23
J CDR3 End29

Versions

All published versions of this sequence.

Sequence NameIMGT NameVersionDate
IGKJ2*04IGKJ2*0412023-07-10
IGKJ2*04IGKJ2*0422023-07-18
IGKJ2*04IGKJ2*0432024-10-12