Sequence IGKJ2*04
Details
| Species | Human |
| Species subgroup | |
| Subgroup type | none |
| Sequence Name | IGKJ2*04 |
| IUIS Name | IGKJ2*04 |
| Alternative names | |
| Affirmation Level | 1 |
| Full Sequence | |
| Coding Sequence | |
| Functionality | ORF |
| Inference Type | Unrearranged and Rearranged |
| Mapped | True |
| Paralogs | |
| Paralog Rep | False |
Un-rearranged Observations
Un-rearranged sequence observations that support this sequence:
| Accession | Type | Repository | Start | End |
|---|---|---|---|---|
| GRCh38:NC_000002.12 | Locational | GenBank | 1377947 | 1377870 |
Observations in AIRR-seq Repertoires
Click here to review supporting data in VDJbase.
Clicking the link will take you to VDJbase. Open in a new tab if you want to keep this page open. In VDJbase, click on the count in the Apperances column to see a list of samples in which the sequence was found.
Non-Core Regions
| j_rs_start | 1 |
| j_rs_end | 39 |
| J_HEPTAMER | CATTGTG |
| J_NONAMER | AGTTTTTGT |
Additional Information
| Sequence ID | A02791 |
| Curator | William Lees |
| Curator address | Birkbeck College, University of London, Malet Street, London |
| Version | 2 |
| Release Date | 2023-07-18 |
| Release Notes | co-ordinates wrongly defined by annotation software |
| Locus | IGK |
| Sequence Type | J |
| Gene Subgroup | 2 |
| Gene Designation | |
| Allele Designation | 04 |
| Codon Frame | 2 |
| J CDR3 End | 2 |
Notes
Notes are added by IARC reviewers.
| Information for this sequence was imported into OGRDB via bulk update with the following notes: |
Attachments
History
History logs the times and reasons for the publication of each version of this sequence.
| William Lees 2023-07-10 11:24:42 | Version 1 published Bulk upload of sequences for the AIRR-C Human IG germline sets |
| William Lees 2023-07-18 11:16:23 | Version 2 published co-ordinates wrongly defined by annotation software |
Changes from previous version
| v1 | v2 | |
|---|---|---|
| Inference Type | Genomic and rearranged | Unrearranged and Rearranged |
| Subgroup type | none | |
| Gene Designation | ||
| j_rs_start | 79 | 1 |
| j_rs_end | 41 | 39 |
| 3' Extension | ||
| 5' Extension |
Versions
All published versions of this sequence.
| Sequence Name | IMGT Name | Alternative names | Inference Type | Affirmation Level | Species subgroup | Subgroup type | Gene start | Gene end | UTR 5' Start | UTR 5' End | L-PART1 Start | L-PART1 End | L-PART2 Start | L-PART2 End | CDR1 Start | CDR1 End | CDR2 Start | CDR2 End | CDR3 Start | v_rs_start | v_rs_end | d_rs_3_prime_start | d_rs_3_prime_end | d_rs_5_prime_start | d_rs_5_prime_end | j_rs_start | j_rs_end | Codon Frame | Version | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| IGKJ2*04 | IGKJ2*04 | Genomic and rearranged | 1 | 40 | 78 | 79 | 41 | 2 | 1 | 2023-07-10 | ||||||||||||||||||||
| IGKJ2*04 | IGKJ2*04 | Unrearranged and Rearranged | 1 | none | 40 | 78 | 1 | 39 | 2 | 2 | 2023-07-18 |