Sequence IGLV-XX4M
Details
| Species | Mouse |
| Species subgroup | 129S1/SvImJ |
| Subgroup type | strain |
| Sequence Name | IGLV-XX4M |
| IUIS Name | Musmus IGLV3*01 F |
| Alternative names | Kos et al: IGLV3*01_129S6 |
| Affirmation Level | 1 |
| Full Sequence | |
| Coding Sequence | |
| Functionality | F |
| Inference Type | Genomic Only |
| Mapped | False |
| Paralogs | |
| Paralog Rep | False |
Un-rearranged Observations
Un-rearranged sequence observations that support this sequence:
Observations in AIRR-seq Repertoires
Click here to review supporting data in VDJbase.
Clicking the link will take you to VDJbase. Open in a new tab if you want to keep this page open. In VDJbase, click on the count in the Apperances column to see a list of samples in which the sequence was found.
CDR delineation
| CDR1 Start | 76 |
| CDR1 End | 96 |
| CDR2 Start | 148 |
| CDR2 End | 168 |
| CDR3 Start | 277 |
Non-Core Regions
| UTR 5' Start | |
| UTR 5' End | |
| L-PART1 Start | |
| L-PART1 End | |
| L_PART1 | |
| L-PART2 Start | |
| L-PART2 End | |
| L_PART2 | |
| v_rs_start | |
| v_rs_end | |
| V_HEPTAMER | |
| V_NONAMER |
Extension
| 3' Extension | |
| 3' start | |
| 3' end | |
| 5' start | |
| 5' end |
Additional Information
| Sequence ID | A00372 |
| Curator | William Lees |
| Curator address | Birkbeck College, University of London, Malet Street, London |
| Version | 3 |
| Release Date | 2024-04-20 |
| Release Notes | Fix strain name – use capital I instead of lower case L |
| Locus | IGL |
| Sequence Type | V |
| Gene Subgroup | |
| Gene Designation | |
| Allele Designation |
Notes
Notes are added by IARC reviewers.
| Remove space from subgroup name |
Attachments
History
History logs the times and reasons for the publication of each version of this sequence.
| William Lees 2022-05-03 10:23:08 | Version 1 published This version as published in preprint at https://www.biorxiv.org/content/10.1101/2022.05.01.489089v1 |
| William Lees 2022-05-03 10:36:06 | Version 2 published Remove space from strain name |
| William Lees 2024-04-20 15:09:07 | Version 3 published Fix strain name – use capital I instead of lower case L |
Changes from previous version
| v2 | v3 | |
|---|---|---|
| Mapped | False | |
| Inference Type | Rearranged | Genomic Only |
| Species subgroup | 129S1/SvlmJ | 129S1/SvImJ |
| Gene end | 313 | 312 |
| Paralog Rep | False |
Versions
All published versions of this sequence.
| Sequence Name | IMGT Name | Alternative names | Inference Type | Affirmation Level | Species subgroup | Subgroup type | Gene start | Gene end | UTR 5' Start | UTR 5' End | L-PART1 Start | L-PART1 End | L-PART2 Start | L-PART2 End | CDR1 Start | CDR1 End | CDR2 Start | CDR2 End | CDR3 Start | v_rs_start | v_rs_end | d_rs_3_prime_start | d_rs_3_prime_end | d_rs_5_prime_start | d_rs_5_prime_end | j_rs_start | j_rs_end | Codon Frame | Version | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| IGLV-XX4M | Musmus IGLV3*01 F | Kos et al: IGLV3*01_129S6 | Rearranged | 1 | 129S1/SvlmJ | strain | 1 | 313 | 76 | 96 | 148 | 168 | 277 | 1 | 2022-05-03 | |||||||||||||||
| IGLV-XX4M | Musmus IGLV3*01 F | Kos et al: IGLV3*01_129S6 | Rearranged | 1 | 129S1/SvlmJ | strain | 1 | 313 | 76 | 96 | 148 | 168 | 277 | 1 | 2 | 2022-05-03 | ||||||||||||||
| IGLV-XX4M | Musmus IGLV3*01 F | Kos et al: IGLV3*01_129S6 | Genomic Only | 1 | 129S1/SvImJ | strain | 1 | 312 | 76 | 96 | 148 | 168 | 277 | 1 | 3 | 2024-04-20 |