Details

SpeciesHuman
Species subgroup
Subgroup typenone
Sequence NameIGHV1-2*05
IUIS NameIGHV1-2*05
Alternative names
Affirmation Level1
Full Sequence
Coding Sequence
FunctionalityORF
Inference TypeGenomic Only
MappedFalse
Paralogs
Paralog RepFalse

Un-rearranged Observations

Un-rearranged sequence observations that support this sequence:

AccessionTypeRepositoryStartEnd
HM855681NonlocationalGenBank32024

Observations in AIRR-seq Repertoires

Click here to review supporting data in VDJbase.

Clicking the link will take you to VDJbase. Open in a new tab if you want to keep this page open. In VDJbase, click on the count in the Apperances column to see a list of samples in which the sequence was found.

CDR delineation

CDR1 Start105
CDR1 End128
CDR2 Start180
CDR2 End203
CDR3 Start318

Non-Core Regions

UTR 5' Start
UTR 5' End
L-PART1 Start
L-PART1 End
L_PART1
L-PART2 Start
L-PART2 End
L_PART2
v_rs_start326
v_rs_end354
V_HEPTAMER
V_NONAMER

Extension

3' Extension
3' start
3' end
5' start
5' end

Additional Information

Sequence IDA02959
CuratorWilliam Lees
Curator addressBirkbeck College, University of London, Malet Street, London
Version2
Release Date2024-02-23
Release Notes

Remove the questionable annotation of L-PART1

LocusIGH
Sequence TypeV
Gene Subgroup1
Gene Designation2
Allele Designation05

Acknowledgements

Individuals acknowledged as contributing to this sequence:

No Items

Notes

Notes are added by IARC reviewers.

Information for this sequence was imported into OGRDB via bulk update with the following notes:
Sequence annotation is based on Genbank sample HM855681. Sequence observed in data from Rodriguez et al.
2023 as reported in VDJbase (26 samples). Example subject: P25_I25.

Annotation of L-PART2 removed as this is in conflict with that observed by Huang, Thörnqvist and Ohlin, 2021

Attachments

No Items

History

History logs the times and reasons for the publication of each version of this sequence.

William Lees
2023-08-15 12:54:48
Version 1 published

Sequences added following discussion at IARC meeting on 9th August 2023

William Lees
2024-02-23 15:40:50
Version 2 published

Remove the questionable annotation of L-PART1

Changes from previous version

v1v2
Subgroup typenone
L-PART2 Start20
L-PART2 End29
Codon Frame1
3' Extension
5' Extension
Noteschanged

Versions

All published versions of this sequence.

Sequence NameIMGT NameAlternative namesInference TypeAffirmation LevelSpecies subgroupSubgroup typeVersionDate
IGHV1-2*05IGHV1-2*05Genomic Only112023-08-15
IGHV1-2*05IGHV1-2*05Genomic Only1none22024-02-23