Sequence IGHV1-2*05
Details
| Species | Homo sapiens |
| Species subgroup | |
| Subgroup type | none |
| Sequence Name | IGHV1-2*05 |
| IUIS Name | IGHV1-2*05 |
| Alternative names | |
| Affirmation Level | 1 |
| Full Sequence | |
| Coding Sequence | |
| Functionality | ORF |
| Inference Type | Genomic Only |
| Mapped | False |
| Paralogs | |
| Paralog Rep | False |
Un-rearranged Observations
Un-rearranged sequence observations that support this sequence:
| Accession | Type | Repository | Start | End |
|---|---|---|---|---|
| HM855681 | Nonlocational | GenBank | 320 | 24 |
Observations in AIRR-seq Repertoires
Click here to review supporting data in VDJbase.
Clicking the link will take you to VDJbase. Open in a new tab if you want to keep this page open. In VDJbase, click on the count in the Apperances column to see a list of samples in which the sequence was found.
CDR delineation
| CDR1 Start | 105 |
| CDR1 End | 128 |
| CDR2 Start | 180 |
| CDR2 End | 203 |
| CDR3 Start | 318 |
Non-Core Regions
| UTR 5' Start | |
| UTR 5' End | |
| L-PART1 Start | |
| L-PART1 End | |
| L_PART1 | |
| L-PART2 Start | |
| L-PART2 End | |
| L_PART2 | |
| v_rs_start | 326 |
| v_rs_end | 354 |
| V_HEPTAMER | |
| V_NONAMER |
Extension
| 3' Extension | |
| 3' start | |
| 3' end | |
| 5' start | |
| 5' end |
Additional Information
| Sequence ID | A02959 |
| Curator | William Lees |
| Curator address | Birkbeck College, University of London, Malet Street, London |
| Version | 2 |
| Release Date | 2024-02-23 |
| Release Notes | Remove the questionable annotation of L-PART1 |
| Locus | IGH |
| Sequence Type | V |
| Gene Subgroup | 1 |
| Gene Designation | 2 |
| Allele Designation | 05 |
| Gene start | 30 |
| Gene end | 325 |
Notes
Notes are added by IARC reviewers.
| Information for this sequence was imported into OGRDB via bulk update with the following notes: Annotation of L-PART2 removed as this is in conflict with that observed by Huang, Thörnqvist and Ohlin, 2021 |
Attachments
History
History logs the times and reasons for the publication of each version of this sequence.
| William Lees 2023-08-15 12:54:48 | Version 1 published Sequences added following discussion at IARC meeting on 9th August 2023 |
| William Lees 2024-02-23 15:40:50 | Version 2 published Remove the questionable annotation of L-PART1 |
Changes from previous version
| v1 | v2 | |
|---|---|---|
| Subgroup type | none | |
| L-PART2 Start | 20 | |
| L-PART2 End | 29 | |
| Codon Frame | 1 | |
| 3' Extension | ||
| 5' Extension | ||
| Notes | changed |
Versions
All published versions of this sequence.
| Sequence Name | IMGT Name | Version | Date |
|---|---|---|---|
| IGHV1-2*05 | IGHV1-2*05 | 1 | 2023-08-15 |
| IGHV1-2*05 | IGHV1-2*05 | 2 | 2024-02-23 |