Sequence IGHV1-2*04
Details
| Species | Human |
| Species subgroup | |
| Subgroup type | none |
| Sequence Name | IGHV1-2*04 |
| IUIS Name | IGHV1-2*04 |
| Alternative names | |
| Affirmation Level | 1 |
| Full Sequence | |
| Coding Sequence | |
| Functionality | ORF |
| Inference Type | Genomic and rearranged |
| Mapped | True |
| Paralogs | |
| Paralog Rep | False |
Un-rearranged Observations
Un-rearranged sequence observations that support this sequence:
| Accession | Type | Repository | Start | End |
|---|---|---|---|---|
| HM855893 | Nonlocational | GenBank | 1 | 330 |
| GRCh38:CM000676.2 | Locational | GenBank | 892826 | 893302 |
Observations in AIRR-seq Repertoires
Click here to review supporting data in VDJbase.
Clicking the link will take you to VDJbase. Open in a new tab if you want to keep this page open. In VDJbase, click on the count in the Apperances column to see a list of samples in which the sequence was found.
CDR delineation
| CDR1 Start | 218 |
| CDR1 End | 241 |
| CDR2 Start | 293 |
| CDR2 End | 316 |
| CDR3 Start | 431 |
Non-Core Regions
| UTR 5' Start | |
| UTR 5' End | |
| L-PART1 Start | 1 |
| L-PART1 End | 46 |
| L_PART1 | ATGGACTGGACCTGGAGGATCCTCTTCTTGGTGGCAGCAGCCACAG |
| L-PART2 Start | 132 |
| L-PART2 End | 142 |
| L_PART2 | GAGCCCACTCC |
| v_rs_start | 439 |
| v_rs_end | 477 |
| V_HEPTAMER | CACAGTG |
| V_NONAMER | TCAGAAACC |
Extension
| 3' Extension | |
| 3' start | |
| 3' end | |
| 5' start | |
| 5' end |
Additional Information
| Sequence ID | A02650 |
| Curator | William Lees |
| Curator address | Birkbeck College, University of London, Malet Street, London |
| Version | 2 |
| Release Date | 2024-02-23 |
| Release Notes | Base annotation against GRCh38 to obtain leader sequence |
| Locus | IGH |
| Sequence Type | V |
| Gene Subgroup | 1 |
| Gene Designation | 2 |
| Allele Designation | 04 |
Notes
Notes are added by IARC reviewers.
| Sequence annotation is based on GRCh38:CM000676.2 |
Attachments
History
History logs the times and reasons for the publication of each version of this sequence.
| William Lees 2023-07-10 11:24:35 | Version 1 published Bulk upload of sequences for the AIRR-C Human IG germline sets |
| William Lees 2024-02-23 15:09:39 | Version 2 published Base annotation against GRCh38 to obtain leader sequence |
Changes from previous version
| v1 | v2 | |
|---|---|---|
| Subgroup type | none | |
| Full Sequence | ||
| Gene start | 28 | 143 |
| Gene end | 323 | 438 |
| L-PART1 Start | 1 | |
| L-PART1 End | 46 | |
| L-PART2 Start | 17 | 132 |
| L-PART2 End | 27 | 142 |
| CDR1 Start | 103 | 218 |
| CDR1 End | 126 | 241 |
| CDR2 Start | 178 | 293 |
| CDR2 End | 201 | 316 |
| CDR3 Start | 316 | 431 |
| v_rs_start | 324 | 439 |
| v_rs_end | 352 | 477 |
| Codon Frame | 1 | |
| 3' Extension | ||
| 5' Extension | ||
| Notes | changed |
Versions
All published versions of this sequence.
| Sequence Name | IMGT Name | Alternative names | Inference Type | Affirmation Level | Species subgroup | Subgroup type | Gene start | Gene end | UTR 5' Start | UTR 5' End | L-PART1 Start | L-PART1 End | L-PART2 Start | L-PART2 End | CDR1 Start | CDR1 End | CDR2 Start | CDR2 End | CDR3 Start | v_rs_start | v_rs_end | d_rs_3_prime_start | d_rs_3_prime_end | d_rs_5_prime_start | d_rs_5_prime_end | j_rs_start | j_rs_end | Codon Frame | Version | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| IGHV1-2*04 | IGHV1-2*04 | Genomic and rearranged | 1 | 28 | 323 | 17 | 27 | 103 | 126 | 178 | 201 | 316 | 324 | 352 | 1 | 2023-07-10 | ||||||||||||||
| IGHV1-2*04 | IGHV1-2*04 | Genomic and rearranged | 1 | none | 143 | 438 | 1 | 46 | 132 | 142 | 218 | 241 | 293 | 316 | 431 | 439 | 477 | 1 | 2 | 2024-02-23 |