Sequence IGLV3-16*01_t145g_t146c
Details
| Species | Human |
| Species subgroup | |
| Subgroup type | none |
| Sequence Name | IGLV3-16*01_t145g_t146c |
| IUIS Name | |
| Alternative names | |
| Affirmation Level | 1 |
| Full Sequence | |
| Coding Sequence | |
| Functionality | ORF |
| Inference Type | Genomic Only |
| Mapped | False |
| Paralogs | |
| Paralog Rep | False |
Un-rearranged Observations
Un-rearranged sequence observations that support this sequence:
Observations in AIRR-seq Repertoires
Click here to review supporting data in VDJbase.
Clicking the link will take you to VDJbase. Open in a new tab if you want to keep this page open. In VDJbase, click on the count in the Apperances column to see a list of samples in which the sequence was found.
CDR delineation
| CDR1 Start | 287 |
| CDR1 End | 304 |
| CDR2 Start | 356 |
| CDR2 End | 364 |
| CDR3 Start | 473 |
Non-Core Regions
| UTR 5' Start | |
| UTR 5' End | |
| L-PART1 Start | 1 |
| L-PART1 End | 46 |
| L_PART1 | ATGGCCTGGATCCCTCTCCTGCTCCCCCTCCTCACTCTCTGCACAG |
| L-PART2 Start | 201 |
| L-PART2 End | 211 |
| L_PART2 | GCTCTGAGGCC |
| v_rs_start | 502 |
| v_rs_end | 540 |
| V_HEPTAMER | CACAGTG |
| V_NONAMER | ACATAAACC |
Extension
| 3' Extension | |
| 3' start | |
| 3' end | |
| 5' start | |
| 5' end |
Additional Information
| Sequence ID | A02916 |
| Curator | William Lees |
| Curator address | Birkbeck College, University of London, Malet Street, London |
| Version | 2 |
| Release Date | 2024-02-22 |
| Release Notes | Supporting sequence and annotation updated |
| Locus | IGL |
| Sequence Type | V |
| Gene Subgroup | 3 |
| Gene Designation | 16 |
| Allele Designation | 01_t145g_t146c |
Notes
Notes are added by IARC reviewers.
| Information for this sequence was imported into OGRDB via bulk update with the following notes: |
Attachments
History
History logs the times and reasons for the publication of each version of this sequence.
| William Lees 2023-07-10 11:24:47 | Version 1 published Bulk upload of sequences for the AIRR-C Human IG germline sets |
| William Lees 2024-02-22 15:37:24 | Version 2 published Supporting sequence and annotation updated |
Changes from previous version
| v1 | v2 | |
|---|---|---|
| Full Sequence | ||
| Gene start | 250 | 212 |
| Gene end | 539 | 501 |
| L-PART1 Start | 1 | |
| L-PART1 End | 46 | |
| L-PART2 Start | 239 | 201 |
| L-PART2 End | 249 | 211 |
| CDR1 Start | 325 | 287 |
| CDR1 End | 342 | 304 |
| CDR2 Start | 394 | 356 |
| CDR2 End | 402 | 364 |
| CDR3 Start | 511 | 473 |
| v_rs_start | 540 | 502 |
| v_rs_end | 578 | 540 |
Versions
All published versions of this sequence.
| Sequence Name | IMGT Name | Alternative names | Inference Type | Affirmation Level | Species subgroup | Subgroup type | Gene start | Gene end | UTR 5' Start | UTR 5' End | L-PART1 Start | L-PART1 End | L-PART2 Start | L-PART2 End | CDR1 Start | CDR1 End | CDR2 Start | CDR2 End | CDR3 Start | v_rs_start | v_rs_end | d_rs_3_prime_start | d_rs_3_prime_end | d_rs_5_prime_start | d_rs_5_prime_end | j_rs_start | j_rs_end | Codon Frame | Version | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| IGLV3-16*01_t145g_t146c | Genomic Only | 1 | none | 250 | 539 | 239 | 249 | 325 | 342 | 394 | 402 | 511 | 540 | 578 | 1 | 1 | 2023-07-10 | |||||||||||||
| IGLV3-16*01_t145g_t146c | Genomic Only | 1 | none | 212 | 501 | 1 | 46 | 201 | 211 | 287 | 304 | 356 | 364 | 473 | 502 | 540 | 1 | 2 | 2024-02-22 |