Sequence IGKV1-39*01
Details
| Species | Homo sapiens |
| Species subgroup | |
| Subgroup type | |
| Sequence Name | IGKV1-39*01 |
| IUIS Name | IGKV1-39*01 |
| Alternative names | |
| Affirmation Level | 1 |
| Full Sequence | |
| Coding Sequence | |
| Functionality | ORF |
| Inference Type | Genomic and rearranged |
| Mapped | True |
| Paralogs | IGKV1D-39*01 |
| Paralog Rep | False |
Un-rearranged Observations
Un-rearranged sequence observations that support this sequence:
| Accession | Type | Repository | Start | End |
|---|---|---|---|---|
| X93627 | Nonlocational | GenBank | 1 | 287 |
| AC244255 | Nonlocational | GenBank | 187915 | 188413 |
| NG_000834 | Nonlocational | GenBank | 21534 | 22032 |
| GRCh38:NC_000002.12 | Locational | GenBank | 1377692 | 1377194 |
Observations in AIRR-seq Repertoires
Click here to review supporting data in VDJbase.
Clicking the link will take you to VDJbase. Open in a new tab if you want to keep this page open. In VDJbase, click on the count in the Apperances column to see a list of samples in which the sequence was found.
CDR delineation
| CDR1 Start | 263 |
| CDR1 End | 280 |
| CDR2 Start | 332 |
| CDR2 End | 340 |
| CDR3 Start | 449 |
Non-Core Regions
| UTR 5' Start | |
| UTR 5' End | |
| L-PART1 Start | 1 |
| L-PART1 End | 49 |
| L_PART1 | ATGAGGGTCCCCGCTCAGCTCCTGGGGCTCCTGCTACTCTGGCTCCGAG |
| L-PART2 Start | 174 |
| L-PART2 End | 184 |
| L_PART2 | GTGCCAGATGT |
| v_rs_start | 472 |
| v_rs_end | 499 |
| V_HEPTAMER | CACAGTG |
| V_NONAMER | ACATAAACC |
Extension
| 3' Extension | |
| 3' start | |
| 3' end | |
| 5' start | |
| 5' end |
Additional Information
| Sequence ID | A02803 |
| Curator | William Lees |
| Curator address | Birkbeck College, University of London, Malet Street, London |
| Version | 1 |
| Release Date | 2023-07-10 |
| Release Notes | Bulk upload of sequences for the AIRR-C Human IG germline sets |
| Locus | IGK |
| Sequence Type | V |
| Gene Subgroup | 1 |
| Gene Designation | 39 |
| Allele Designation | 01 |
| Gene start | 185 |
| Gene end | 471 |
Notes
Notes are added by IARC reviewers.
| Information for this sequence was imported into OGRDB via bulk update with the following notes: |
Attachments
History
History logs the times and reasons for the publication of each version of this sequence.
| William Lees 2023-07-10 11:24:43 | Version 1 published Bulk upload of sequences for the AIRR-C Human IG germline sets |
Versions
All published versions of this sequence.
| Sequence Name | IMGT Name | Version | Date |
|---|---|---|---|
| IGKV1-39*01 | IGKV1-39*01 | 1 | 2023-07-10 |