Details

SpeciesHuman
Species subgroup
Subgroup type
Sequence NameIGHD5-5*01
IUIS NameIGHD5-5*01
Alternative names
Affirmation Level1
Full Sequence
Coding Sequence
FunctionalityORF
Inference TypeGenomic Only
MappedTrue
ParalogsIGHD5-18*01
Paralog RepTrue

Un-rearranged Observations

Un-rearranged sequence observations that support this sequence:

AccessionTypeRepositoryStartEnd
X97051NonlocationalGenBank4091940994
AB019441NonlocationalGenBank111378111453
ON052113NonlocationalGenBank135210
GRCh38:CM000676.2LocationalGenBank967541967616

Observations in AIRR-seq Repertoires

Click here to review supporting data in VDJbase.

Clicking the link will take you to VDJbase. Open in a new tab if you want to keep this page open. In VDJbase, click on the count in the Apperances column to see a list of samples in which the sequence was found.

Non-Core Regions

d_rs_3_prime_start49
d_rs_3_prime_end76
d_rs_5_prime_start1
d_rs_5_prime_end28
D_3_HEPTAMERCACAGTG
D_3_NONAMERGCAGCAACC
D_5_HEPTAMERGACTGTG
D_5_NONAMERGGTTATTGT

Additional Information

Sequence IDA02633
CuratorWilliam Lees
Curator addressBirkbeck College, University of London, Malet Street, London
Version1
Release Date2023-07-10
Release Notes

Bulk upload of sequences for the AIRR-C Human IG germline sets

LocusIGH
Sequence TypeD
Gene Subgroup5
Gene Designation5
Allele Designation01

Acknowledgements

Individuals acknowledged as contributing to this sequence:

No Items

Notes

Notes are added by IARC reviewers.

Information for this sequence was imported into OGRDB via bulk update with the following notes:
Sequence annotation is based on Genbank sample X97051

Attachments

No Items

History

History logs the times and reasons for the publication of each version of this sequence.

William Lees
2023-07-10 11:24:34
Version 1 published

Bulk upload of sequences for the AIRR-C Human IG germline sets

Versions

All published versions of this sequence.

Sequence NameIMGT NameAlternative namesInference TypeAffirmation LevelSpecies subgroupSubgroup typeVersionDate
IGHD5-5*01IGHD5-5*01Genomic Only112023-07-10