Species | Homo sapiens |
Species subgroup | |
Subgroup type | |
Sequence Name | IGHV1-2*06 |
IUIS Name | IGHV1-2*06 |
Alternative names | IGHV1-2*i01 |
Affirmation Level | 1 |
Full Sequence | |
Coding Sequence | |
Functionality | ORF |
Inference Type | Rearranged Only |
Mapped | True |
Paralogs | |
Paralog Rep | False |
Un-rearranged sequence observations that support this sequence:
Accession | Type | Repository | Start | End |
---|---|---|---|---|
MH779621 | Inferred | GenBank | 1 | 295 |
Click here to review supporting data in VDJbase.
Clicking the link will take you to VDJbase. Open in a new tab if you want to keep this page open. In VDJbase, click on the count in the Apperances column to see a list of samples in which the sequence was found.
CDR1 Start | 76 |
CDR1 End | 99 |
CDR2 Start | 151 |
CDR2 End | 174 |
CDR3 Start | 289 |
3' Extension | A |
3' start | |
3' end |
Sequence ID | A00003 |
Curator | William Lees |
Curator address | Birkbeck College, University of London, Malet Street, London |
Version | 4 |
Release Date | 2023-07-10 |
Release Notes | Bulk upload of sequences for the AIRR-C Human IG germline sets |
Locus | IGH |
Sequence Type | V |
Gene Subgroup | 1 |
Gene Designation | 2 |
Allele Designation | 06 |
Gene start | 1 |
Gene end | 295 |
Notes are added by IARC reviewers.
Originally approved by IARC on March 9, 2018. “The sequence was inferred by Martin Corcoran using IgDiscover, and by Duncan Ralph using both Partis and TIgGER. The number of unique CDR3 used by sequences with exact matches to the inferred germline allele represents 1.9% [NOTE: 1.77% using the herein used approach to define number of exact matches] of all unique CDR3 associated to exact IGHV matches in the genotype,according to IgDiscover. There were at least 739 unique rearrangements, utilizing 19 D genes and 7 J genes, and hundreds of exact matches. The allele was the more frequently utilized allele, with an expression ratio of 70:30 with the *01 allele. The inference was supported by haplotype analysis using IGHJ6*02/*03. The sequence is present in the IgPdb as IGHV1-2*p06. The full length sequence was first reported to IgPdb in 2015 by Scheepers and colleagues (see J Immunol 194:4371-8) from genomic sequencing, and it was separately reported to IgPdb in 2016 by Kirik and colleagues (see Mol Immunol 87:12-22), as an inference from VDJ rearrangements.” In line with IARC policy, the submitted sequence was recognized up to and including nucleotide 319. (April 12, 2019) A trailing “.” in the sequence indicates IARC’s opinion that the sequence is likely to contain additional 3’ nucleotides for which there is insufficient evidence to make an affirmation. The allele was incorporated into IMGT on July 24, 2018 as IGHV1-2*06. Additional information for this sequence was imported into OGRDB via bulk update with the following notes: |
History logs the times and reasons for the publication of each version of this sequence.
Mats Ohlin 2018-12-21 11:57:50 | Version 1 published Submission published by IARC on Dec 21, 2018. |
Andrew Collins 2019-04-03 04:11:05 | Version 2 published This version was created to include details highlighting the fact that the published sequence was affirmed up to and including nucleotide 319, but the submitted sequence was one nucleotide longer. |
Mats Ohlin 2019-04-12 14:53:18 | Version 3 published A trailing “.” in the sequence indicates IARC’s opinion that the sequence is likely to contain additional 3’ nucleotides for which there is insufficient evidence to make an affirmation. |
William Lees 2023-07-10 11:24:35 | Version 4 published Bulk upload of sequences for the AIRR-C Human IG germline sets |
v3 | v4 | |
---|---|---|
Curator | William Lees | |
Curator address | Dept. of Immunotechnology, Lund University, Lund, Sweden | Birkbeck College, University of London, Malet Street, London |
Sequence Name | IGHV1-2*i01 | IGHV1-2*06 |
Alternative names | IGHV1-2*p06, IGHV1-2*06 | IGHV1-2*i01 |
Mapped | True | |
Functionality | F | ORF |
Species subgroup | ||
Subgroup type | ||
Allele Designation | i01 | 06 |
Full Sequence | ||
Gene start | 1 | |
Gene end | 295 | |
CDR1 Start | 76 | |
CDR1 End | 99 | |
CDR2 Start | 151 | |
CDR2 End | 174 | |
CDR3 Start | 289 | |
Paralog Rep | False | |
Extension? | False | True |
3' Extension | A | |
5' Extension | ||
curational_tags | likely_truncated | |
Notes | changed |
All published versions of this sequence.
Sequence Name | IMGT Name | Version | Date |
---|---|---|---|
IGHV1-2*i01 | IGHV1-2*06 | 1 | 2018-12-21 |
IGHV1-2*i01 | IGHV1-2*06 | 2 | 2019-04-03 |
IGHV1-2*i01 | IGHV1-2*06 | 3 | 2019-04-12 |
IGHV1-2*06 | IGHV1-2*06 | 4 | 2023-07-10 |