Details

SpeciesHomo sapiens
Species subgroup
Subgroup typenone
Sequence NameIGHV4-39*i03
IUIS Name
Alternative namesIGHV4-39*01 G315A
Affirmation Level1
Full Sequence
Coding Sequence
FunctionalityF
Inference TypeRearranged
Mapped
Paralogs
Paralog Rep

Observations in VDJbase

Inferred sequences in VDJbase that match this sequence:

VDJbase Allele NameSubjectsSequence Match
IGHV4-39*01_g315a 3

Un-rearranged Observations

Un-rearranged sequence observations that support this sequence:

No Items

CDR delineation

CDR1 Start76
CDR1 End105
CDR2 Start157
CDR2 End177
CDR3 Start292

Non-Core Regions

UTR 5' Start
UTR 5' End
L-PART1 Start
L-PART1 End
L_PART1
L-PART2 Start
L-PART2 End
L_PART2
v_rs_start
v_rs_end
V_HEPTAMER
V_NONAMER

Extension

3' Extension
3' start
3' end
5' start
5' end

Additional Information

Sequence IDA02561
CuratorMats Ohlin
Curator addressDept. of Immunotechnology, Lund University, Medicon Village building 406, S-22381 Lund, Sweden
Version2
Release Date2023-06-02
Release Notes

A typographical error in the Notes section was corrected: “The genotype carried one other allele of IGHV4-39 (IGHV4-31*01, and a variant allele with a low number of associated reads that likely represents 3’-trimmed reads of IGHV4-39*01).” was corrected to “The genotype carried one other allele of IGHV4-39 (IGHV4-39*01, and a variant allele with a low number of associated reads that likely represents 3’-trimmed reads of IGHV4-39*01).”.

LocusIGH
Sequence TypeV
Gene Subgroup4
Gene Designation39
Allele Designationi03
Gene start1
Gene end298

Acknowledgements

Individuals acknowledged as contributing to this sequence:

No Items

Notes

Notes are added by IARC reviewers.

This inferred allele was assessed at IARC meeting 100 on June 8th, 2022. IGHV4-39*01_G315A was inferred in subject S57 (VDJ-base: P1_I60_S1). The genotype carried one other allele of IGHV4-39 (IGHV4-39*01, and a variant allele with a low number of associated reads that likely represents 3’-trimmed reads of IGHV4-39*01). The inference was supported by a large number of sequences (1424) and unmutated sequences (1151), a high overall frequency in the unmutated population (2.47%) and a large set of unique diverse CDR3s (1048) in the unmutated sequence set. It represented 48% of sequences associated with the gene. Haplotyping based on allelic diversity in IGHJ6 was not possible. IARC affirms the sequence at level 1 up to and including base 319 in agreement with past practice. It is acknowledged that the allele most likely carries one additional base, typically A at base position 320. A trailing “.” indicates IARC’s opinion that the sequence is likely to contain one additional 3’-nucleotides for which there is insufficient evidence to make an affirmation. The allele is given the name IGHV4-39*i03.

Attachments

No Items

History

History logs the times and reasons for the publication of each version of this sequence.

Mats Ohlin
2022-07-25 10:54:25
Version 1 published

The allele was published by IARC on July 25th, 2022.

Mats Ohlin
2023-06-02 14:44:22
Version 2 published

A typographical error in the Notes section was corrected: “The genotype carried one other allele of IGHV4-39 (IGHV4-31*01, and a variant allele with a low number of associated reads that likely represents 3’-trimmed reads of IGHV4-39*01).” was corrected to “The genotype carried one other allele of IGHV4-39 (IGHV4-39*01, and a variant allele with a low number of associated reads that likely represents 3’-trimmed reads of IGHV4-39*01).”.

Changes from previous version

v1v2
Noteschanged

Versions

All published versions of this sequence.

Sequence NameIMGT NameVersionDate
IGHV4-39*i0312022-07-25
IGHV4-39*i0322023-06-02
IGHV4-39*i0332023-07-10