Species | Homo sapiens |
Species subgroup | |
Subgroup type | none |
Sequence Name | IGHV4-59*i03 |
IUIS Name | |
Alternative names | IGHV4-59*01 G267A |
Affirmation Level | 1 |
Full Sequence | |
Coding Sequence | |
Functionality | F |
Inference Type | Rearranged |
Mapped | |
Paralogs | |
Paralog Rep |
Inferred sequences in VDJbase that match this sequence:
VDJbase Allele Name | Subjects | Sequence Match |
---|---|---|
IGHV4-59*01_g267a | 1 |
Un-rearranged sequence observations that support this sequence:
CDR1 Start | 76 |
CDR1 End | 99 |
CDR2 Start | 151 |
CDR2 End | 171 |
CDR3 Start | 286 |
UTR 5' Start | |
UTR 5' End | |
L-PART1 Start | |
L-PART1 End | |
L_PART1 | |
L-PART2 Start | |
L-PART2 End | |
L_PART2 | |
v_rs_start | |
v_rs_end | |
V_HEPTAMER | |
V_NONAMER |
3' Extension | |
3' start | |
3' end | |
5' start | |
5' end |
Sequence ID | A02564 |
Curator | Mats Ohlin |
Curator address | Dept. of Immunotechnology, Lund University, Medicon Village building 406, S-22381 Lund, Sweden |
Version | 1 |
Release Date | 2022-09-28 |
Release Notes | The allele was published by IARC on Sept 28, 2022. |
Locus | IGH |
Sequence Type | V |
Gene Subgroup | 4 |
Gene Designation | 59 |
Allele Designation | i03 |
Gene start | 1 |
Gene end | 292 |
Notes are added by IARC reviewers.
This inference was assessed at IARC meeting 100 (June 8th, 2022) and meeting 101 (July 21st, 2022). IGHV4-59*01_G267A was inferred in subject S36 (VDJ-base: P1_I39_S1). The genotype carried one other allele of IGHV4-59. This sample carries few IGHV reads. The inference was consequently supported by a relative small number of sequences (60) and unmutated sequences (43), a relatively low overall frequency in the unmutated population (0.58%) and a small but diverse set of unique CDR3s (43) in the unmutated sequence set. Its allelic ratio was 31%. Haplotyping based on allelic diversity in IGHJ6 was possible with excellent separation from reads associated to IGHV4-59*01 (IGHV4-59*01_G267A: 0:100; IGHV4-59*01: 100:0). IARC affirms the sequence at level 1 up to and including base 319 in agreement with past practice. It is acknowledged that the allele most likely carries one additional base, typically A at base position 320. A trailing “.” indicates IARC’s opinion that the sequence is likely to contain one additional 3’-nucleotides for which there is insufficient evidence to make an affirmation. The allele is given the name IGHV4-59*i03. |
History logs the times and reasons for the publication of each version of this sequence.
Mats Ohlin 2022-09-28 10:41:40 | Version 1 published The allele was published by IARC on Sept 28, 2022. |
All published versions of this sequence.
Sequence Name | IMGT Name | Version | Date |
---|---|---|---|
IGHV4-59*i03 | 1 | 2022-09-28 | |
IGHV4-59*i03 | 2 | 2023-07-10 |