Species | Homo sapiens |
Species subgroup | |
Subgroup type | none |
Sequence Name | IGHV1-69*i04 |
IUIS Name | |
Alternative names | IGHV1-69*06 G240A,IGHV1-69(D)*i04 |
Affirmation Level | 1 |
Full Sequence | |
Coding Sequence | |
Functionality | F |
Inference Type | Rearranged |
Mapped | False |
Paralogs | |
Paralog Rep | False |
The table below lists submissions to IARC , and the inferences within them, on which this IARC-affirmed sequence is based.
'Sequence Match' indicates whether the inference exactly matches the sequence, and clicking on the tick or cross will provide an alignment. Mismatches may be caused, for example, by the inclusion of leader sequences, or nucleotides in the inference which do not in IARC's opinion have sufficient evidence for inclusion in the sequence.
Submission ID | Accession No | Subject ID | Genotype Name | Sequence Name | Sequence Match |
---|---|---|---|---|---|
S00037 | OW151137 | S45 | P1_I48_S1_ogrdb_report | IGHV1-69*06_G240A |
Inferred sequences in VDJbase that match this sequence:
VDJbase Allele Name | Subjects | Sequence Match |
---|---|---|
IGHV1-69*06_g240a | 1 |
Un-rearranged sequence observations that support this sequence:
CDR1 Start | 76 |
CDR1 End | 99 |
CDR2 Start | 151 |
CDR2 End | 174 |
CDR3 Start | 289 |
UTR 5' Start | |
UTR 5' End | |
L-PART1 Start | |
L-PART1 End | |
L_PART1 | |
L-PART2 Start | |
L-PART2 End | |
L_PART2 | |
v_rs_start | |
v_rs_end | |
V_HEPTAMER | |
V_NONAMER |
3' Extension | |
3' start | |
3' end | |
5' start | |
5' end |
Sequence ID | A02559 |
Curator | Mats Ohlin |
Curator address | Dept. of Immunotechnology, Lund University, Medicon Village building 406, S-22381 Lund, Sweden |
Version | 2 |
Release Date | 2023-07-10 |
Release Notes | (D) removed from name as this designation is not used in the AIRR-C human germline sets |
Locus | IGH |
Sequence Type | V |
Gene Subgroup | 1 |
Gene Designation | 1-69(D) |
Allele Designation | i04 |
Gene start | 1 |
Gene end | 295 |
Notes are added by IARC reviewers.
This inferred allele was assessed at IARC meeting 100 on June 8th, 2022. IGHV1-69*06_G240A was inferred in subject S45 (VDJ-base: P1_I48_S1). The genotype also carried IGHV1-69*01 and IGHV1-69*06. Given the common duplication of IGHV1-69 in the human IGHV locus, this is not an unexpected finding. The inference was supported by a relative large number of sequences (680) and unmutated sequences (627), a high overall frequency in the unmutated population (2.4%) and a large and diverse set of unique CDR3s (607) in the unmutated sequence set. Its allelic ratio was 22%. Haplotyping based on allelic diversity in IGHJ6 was not possible. IARC affirms the sequence at level 1 up to and including base 319 in agreement with past practice. It is acknowledged that the allele most likely carries one additional base, typically A at base position 320. A trailing “.” indicates IARC’s opinion that the sequence is likely to contain one additional 3’-nucleotides for which there is insufficient evidence to make an affirmation. The allele is given the name IGHV1-69(D)*i04. This name highlights the uncertainty of which of the two duplicated genes the allele is most likely associated with. |
History logs the times and reasons for the publication of each version of this sequence.
Mats Ohlin 2022-07-25 10:52:55 | Version 1 published The allele was published by IARC on July 25th, 2022. |
William Lees 2023-07-10 11:20:54 | Version 2 published (D) removed from name as this designation is not used in the AIRR-C human germline sets |
All published versions of this sequence.
Sequence Name | IMGT Name | Version | Date |
---|---|---|---|
IGHV1-69*i04 | 2 | 2023-07-10 | |
IGHV1-69*i04 | 3 | 2023-07-10 |