Genotype 'P1_I48_S1_ogrdb_report' (Submission S00037)


Genotype Name	P1_I48_S1_ogrdb_report
Subject ID	S45
Locus	IGH
Sequence Type	V
Genotype Filename	P1_I48_S1_ogrdb_report.csv
Tool/Settings	P1_Sequence_protocol

Sequences Threshold

Frequency Threshold

Submitted Inferences Only

Sample	Title
SAMEA4625137	Naive B-Cell repertoire

Record Set	Title
ERR2567222	Illumina MiSeq paired end sequencing

Allele names in italic are not listed in the reference set. Allele names in bold are put forward in the submission for consideration as inferred sequences.

A cross in the Sequence column indicates that the sequence listed in the genotype does not match the sequence of the corresponding allele in the reference set.

An information icon in the Sequence column alerts you to other information on this sequence - hover over for details.

Novel Alleles

Allele name	Sequences	Closest Reference	Closest in Host	NT Diffs (reference)	NT Diffs (host)	NT Substs (reference)	AA Diffs (reference)	AA Substs (reference)	Sequence
**IGHV1-6906_G240A***	680	IGHV1-69*06	IGHV1-69*06	1	1	G240A	0

Genotype

Allele name	Sequences	Unmutated Seqs	Unmutated % within allele	Allelic %	Total unmutated population (%)	Unique CDR3s	Unique CDR3s with unmutated
IGHV1-2*02	502	462	92.03	58.00	1.80	487	452
IGHV1-2*06	366	324	88.52	42.00	1.26	346	310
IGHV1-3*01	300	272	90.67	100.00	1.06	293	266
IGHV1-8*01	669	604	90.28	100.00	2.35	644	586
IGHV1-18*01	746	680	91.15	100.00	2.64	725	663
IGHV1-24*01	221	204	92.31	100.00	0.79	211	198
IGHV1-45*02	4	4	100.00	100.00	0.02	4	4
IGHV1-46*01	437	392	89.70	100.00	1.52	424	384
IGHV1-58*01	112	98	87.50	100.00	0.38	110	97
IGHV1-69*01	1856	1716	92.46	59.00	6.67	1770	1659
IGHV1-69-2*01	73	69	94.52	100.00	0.27	72	68
IGHV1-69*06	597	529	88.61	19.00	2.06	575	518
**IGHV1-6906_G240A***	680	627	92.21	22.00	2.44	656	607
IGHV2-5*02	546	491	89.93	100.00	1.91	523	481
IGHV2-26*01	226	202	89.38	100.00	0.78	220	201
IGHV2-70*01	102	95	93.14	67.00	0.37	101	94
IGHV2-70*04	51	43	84.31	33.00	0.17	50	43
IGHV3-7*01	748	615	82.22	100.00	2.39	709	596
IGHV3-9*01	1712	1448	84.58	100.00	5.63	1573	1369
IGHV3-11*01	817	644	78.82	100.00	2.50	768	623
IGHV3-13*01	180	161	89.44	100.00	0.63	171	156
IGHV3-15*01	827	705	85.25	100.00	2.74	776	676
IGHV3-20*01	50	33	66.00	100.00	0.13	46	32
IGHV3-21*01	1559	1348	86.47	100.00	5.24	1441	1279
IGHV3-23*01	4679	3974	84.93	100.00	15.44	4281	3755
IGHV3-30-3*01	854	721	84.43	100.00	2.80	813	695
IGHV3-30*18	1070	873	81.59	100.00	3.39	1002	840
IGHV3-33*01	1372	1150	83.82	100.00	4.47	1257	1085
IGHV3-43*01	59	49	83.05	100.00	0.19	55	46
IGHV3-48*02	352	308	87.50	33.00	1.20	327	291
IGHV3-48*03	727	625	85.97	67.00	2.43	691	605
IGHV3-49*04	265	221	83.40	64.00	0.86	250	213
IGHV3-49*05	150	125	83.33	36.00	0.49	139	121
IGHV3-53*01	295	262	88.81	68.00	1.02	283	252
IGHV3-53*02	136	122	89.71	32.00	0.47	134	121
IGHV3-64*02	17	15	88.24	100.00	0.06	17	15
IGHV3-66*03	1	1	100.00	33.00	0.00	1	1
IGHV3-66*04	2	1	50.00	67.00	0.00	2	1
IGHV3-72*01	47	40	85.11	100.00	0.16	44	38
IGHV3-73*02	160	137	85.62	100.00	0.53	150	132
IGHV3-74*01	254	222	87.40	100.00	0.86	250	219
IGHV3-43D*04	45	40	88.89	100.00	0.16	44	40
IGHV4-4*02	271	241	88.93	55.00	0.94	261	237
IGHV4-4*07	222	196	88.29	45.00	0.76	216	194
IGHV4-28*01	3	3	100.00	100.00	0.01	3	3
IGHV4-30-2*01	104	91	87.50	100.00	0.35	102	90
IGHV4-31*03	596	535	89.77	100.00	2.08	570	518
IGHV4-34*01	1245	1110	89.16	100.00	4.31	1174	1071
IGHV4-38-2*01	271	234	86.35	66.00	0.91	251	224
IGHV4-38-2*02	142	8	5.63	34.00	0.03	136	8
IGHV4-39*01	858	777	90.56	100.00	3.02	815	753
IGHV4-55*01	1	1	100.00	100.00	0.00	1	1
IGHV4-59*01	699	629	89.99	100.00	2.44	683	621
IGHV4-61*01	267	245	91.76	100.00	0.95	256	240
IGHV4/OR15-8*02	1	0	0.00	100.00	0.00	1	0
IGHV5-51*01	746	682	91.42	100.00	2.65	718	662
IGHV6-1*01	141	130	92.20	100.00	0.51	137	127
IGHV7-4-1*02	229	201	87.77	100.00	0.78	224	199
Totals	29662	25735	86.76