Sample | Title |
---|---|
SAMEA4625137 | Naive B-Cell repertoire |
Record Set | Title |
---|---|
ERR2567222 | Illumina MiSeq paired end sequencing |
Allele name | Sequences | Closest Reference | Closest in Host | NT Diffs (reference) | NT Diffs (host) | NT Substs (reference) | AA Diffs (reference) | AA Substs (reference) | Sequence |
---|---|---|---|---|---|---|---|---|---|
IGHV1-69*06_G240A | 680 | IGHV1-69*06 | IGHV1-69*06 | 1 | 1 | G240A | 0 |
Allele name | Sequences | Unmutated Seqs | Unmutated % within allele | Unmutated UMIs | Allelic % | Total unmutated population (%) | Unique CDR3s | Unique CDR3s with unmutated | Haplotyping Gene | Haplotyping Ratio | Sequence |
---|---|---|---|---|---|---|---|---|---|---|---|
IGHV1-2*02 | 502 | 462 | 92.03 | 58.00 | 1.80 | 487 | 452 | ||||
IGHV1-2*06 | 366 | 324 | 88.52 | 42.00 | 1.26 | 346 | 310 | ||||
IGHV1-3*01 | 300 | 272 | 90.67 | 100.00 | 1.06 | 293 | 266 | ||||
IGHV1-8*01 | 669 | 604 | 90.28 | 100.00 | 2.35 | 644 | 586 | ||||
IGHV1-18*01 | 746 | 680 | 91.15 | 100.00 | 2.64 | 725 | 663 | ||||
IGHV1-24*01 | 221 | 204 | 92.31 | 100.00 | 0.79 | 211 | 198 | ||||
IGHV1-45*02 | 4 | 4 | 100.00 | 100.00 | 0.02 | 4 | 4 | ||||
IGHV1-46*01 | 437 | 392 | 89.70 | 100.00 | 1.52 | 424 | 384 | ||||
IGHV1-58*01 | 112 | 98 | 87.50 | 100.00 | 0.38 | 110 | 97 | ||||
IGHV1-69*01 | 1856 | 1716 | 92.46 | 59.00 | 6.67 | 1770 | 1659 | ||||
IGHV1-69-2*01 | 73 | 69 | 94.52 | 100.00 | 0.27 | 72 | 68 | ||||
IGHV1-69*06 | 597 | 529 | 88.61 | 19.00 | 2.06 | 575 | 518 | ||||
IGHV1-69*06_G240A | 680 | 627 | 92.21 | 22.00 | 2.44 | 656 | 607 | ||||
IGHV2-5*02 | 546 | 491 | 89.93 | 100.00 | 1.91 | 523 | 481 | ||||
IGHV2-26*01 | 226 | 202 | 89.38 | 100.00 | 0.78 | 220 | 201 | ||||
IGHV2-70*01 | 102 | 95 | 93.14 | 67.00 | 0.37 | 101 | 94 | ||||
IGHV2-70*04 | 51 | 43 | 84.31 | 33.00 | 0.17 | 50 | 43 | ||||
IGHV3-7*01 | 748 | 615 | 82.22 | 100.00 | 2.39 | 709 | 596 | ||||
IGHV3-9*01 | 1712 | 1448 | 84.58 | 100.00 | 5.63 | 1573 | 1369 | ||||
IGHV3-11*01 | 817 | 644 | 78.82 | 100.00 | 2.50 | 768 | 623 | ||||
IGHV3-13*01 | 180 | 161 | 89.44 | 100.00 | 0.63 | 171 | 156 | ||||
IGHV3-15*01 | 827 | 705 | 85.25 | 100.00 | 2.74 | 776 | 676 | ||||
IGHV3-20*01 | 50 | 33 | 66.00 | 100.00 | 0.13 | 46 | 32 | ||||
IGHV3-21*01 | 1559 | 1348 | 86.47 | 100.00 | 5.24 | 1441 | 1279 | ||||
IGHV3-23*01 | 4679 | 3974 | 84.93 | 100.00 | 15.44 | 4281 | 3755 | ||||
IGHV3-30-3*01 | 854 | 721 | 84.43 | 100.00 | 2.80 | 813 | 695 | ||||
IGHV3-30*18 | 1070 | 873 | 81.59 | 100.00 | 3.39 | 1002 | 840 | ||||
IGHV3-33*01 | 1372 | 1150 | 83.82 | 100.00 | 4.47 | 1257 | 1085 | ||||
IGHV3-43*01 | 59 | 49 | 83.05 | 100.00 | 0.19 | 55 | 46 | ||||
IGHV3-48*02 | 352 | 308 | 87.50 | 33.00 | 1.20 | 327 | 291 | ||||
IGHV3-48*03 | 727 | 625 | 85.97 | 67.00 | 2.43 | 691 | 605 | ||||
IGHV3-49*04 | 265 | 221 | 83.40 | 64.00 | 0.86 | 250 | 213 | ||||
IGHV3-49*05 | 150 | 125 | 83.33 | 36.00 | 0.49 | 139 | 121 | ||||
IGHV3-53*01 | 295 | 262 | 88.81 | 68.00 | 1.02 | 283 | 252 | ||||
IGHV3-53*02 | 136 | 122 | 89.71 | 32.00 | 0.47 | 134 | 121 | ||||
IGHV3-64*02 | 17 | 15 | 88.24 | 100.00 | 0.06 | 17 | 15 | ||||
IGHV3-66*03 | 1 | 1 | 100.00 | 33.00 | 0.00 | 1 | 1 | ||||
IGHV3-66*04 | 2 | 1 | 50.00 | 67.00 | 0.00 | 2 | 1 | ||||
IGHV3-72*01 | 47 | 40 | 85.11 | 100.00 | 0.16 | 44 | 38 | ||||
IGHV3-73*02 | 160 | 137 | 85.62 | 100.00 | 0.53 | 150 | 132 | ||||
IGHV3-74*01 | 254 | 222 | 87.40 | 100.00 | 0.86 | 250 | 219 | ||||
IGHV3-43D*04 | 45 | 40 | 88.89 | 100.00 | 0.16 | 44 | 40 | ||||
IGHV4-4*02 | 271 | 241 | 88.93 | 55.00 | 0.94 | 261 | 237 | ||||
IGHV4-4*07 | 222 | 196 | 88.29 | 45.00 | 0.76 | 216 | 194 | ||||
IGHV4-28*01 | 3 | 3 | 100.00 | 100.00 | 0.01 | 3 | 3 | ||||
IGHV4-30-2*01 | 104 | 91 | 87.50 | 100.00 | 0.35 | 102 | 90 | ||||
IGHV4-31*03 | 596 | 535 | 89.77 | 100.00 | 2.08 | 570 | 518 | ||||
IGHV4-34*01 | 1245 | 1110 | 89.16 | 100.00 | 4.31 | 1174 | 1071 | ||||
IGHV4-38-2*01 | 271 | 234 | 86.35 | 66.00 | 0.91 | 251 | 224 | ||||
IGHV4-38-2*02 | 142 | 8 | 5.63 | 34.00 | 0.03 | 136 | 8 | ||||
IGHV4-39*01 | 858 | 777 | 90.56 | 100.00 | 3.02 | 815 | 753 | ||||
IGHV4-55*01 | 1 | 1 | 100.00 | 100.00 | 0.00 | 1 | 1 | ||||
IGHV4-59*01 | 699 | 629 | 89.99 | 100.00 | 2.44 | 683 | 621 | ||||
IGHV4-61*01 | 267 | 245 | 91.76 | 100.00 | 0.95 | 256 | 240 | ||||
IGHV4/OR15-8*02 | 1 | 0 | 0.00 | 100.00 | 0.00 | 1 | 0 | ||||
IGHV5-51*01 | 746 | 682 | 91.42 | 100.00 | 2.65 | 718 | 662 | ||||
IGHV6-1*01 | 141 | 130 | 92.20 | 100.00 | 0.51 | 137 | 127 | ||||
IGHV7-4-1*02 | 229 | 201 | 87.77 | 100.00 | 0.78 | 224 | 199 | ||||
Totals | 29662 | 25735 | 86.76 |