Sequence IGHV5-2GFF*04
Details
| Species | Macaca mulatta |
| Species subgroup | |
| Subgroup type | |
| Sequence Name | IGHV5-2GFF*04 |
| IUIS Name | |
| Alternative names | kimdb: IGHV5-157*01; rhgldb+: LJI.Rh_IGHV5.157; imgt: IGHV5-43*04 |
| Affirmation Level | 1 |
| Full Sequence | |
| Coding Sequence | |
| Functionality | F |
| Inference Type | Unrearranged and rearranged |
| Mapped | False |
| Paralogs | |
| Paralog Rep | False |
Un-rearranged Observations
Un-rearranged sequence observations that support this sequence:
| Accession | Type | Repository | Start | End | Coding Sequence | SC Coding Sequence |
|---|---|---|---|---|---|---|
| 10.5281/zenodo.18156194 K397_h1tg000118l | V | VDJbase | 762294 | 762766 |
Observations in AIRR-seq Repertoires
Click here to review supporting data in VDJbase.
Clicking the link will take you to VDJbase. Open in a new tab if you want to keep this page open. In VDJbase, click on the count in the Apperances column to see a list of samples in which the sequence was found.
CDR delineation
| CDR1 Start | 215 |
| CDR1 End | 238 |
| CDR2 Start | 290 |
| CDR2 End | 313 |
| CDR3 Start | 428 |
Non-Core Regions
| UTR 5' Start | |
| UTR 5' End | |
| L-PART1 Start | 1 |
| L-PART1 End | 48 |
| L_PART1 | ATGGGGTCAACTGCCATCCTCGCCCTCCTCCTGGCTGTTCTCCAAGGT |
| L-PART2 Start | 129 |
| L-PART2 End | 139 |
| L_PART2 | GAGTCTGTGCC |
| v_rs_start | 436 |
| v_rs_end | 473 |
| V_HEPTAMER | CACAGTG |
| V_NONAMER | CCAAAAACC |
| Exon 1 Start | |
| Exon 1 End | |
| Exon 2 Start | |
| Exon 2 End | |
| Exon 3 Start | |
| Exon 3 End | |
| Exon 4 Start | |
| Exon 4 End | |
| Exon 5 Start | |
| Exon 5 End | |
| Exon 6 Start | |
| Exon 6 End | |
| Exon 7 Start | |
| Exon 7 End | |
| Exon 8 Start | |
| Exon 8 End | |
| Exon 9 Start | |
| Exon 9 End | |
| UTR 3' Start | |
| UTR 3' End |
Extension
| 3' Extension | |
| 3' start | |
| 3' end | |
| 5' start | |
| 5' end |
Additional Information
| Sequence ID | A05377 |
| Curator | William Lees |
| Curator address | Clareo Biosciences, Louisville, Kentucky, USA |
| Version | 2 |
| Release Date | 2026-02-05 |
| Release Notes | Fixed a problem with some sequences having the wrong coordinates for evidence annotation. |
| Locus | IGH |
| Sequence Type | V |
| Gene Subgroup | 5 |
| Gene Designation | 2GFF |
| Allele Designation | 04 |
| Gene start | 140 |
| Gene end | 435 |
Notes
Notes are added by IARC reviewers.
| Information for this sequence was imported into OGRDB via bulk update with the following notes: Additional information for this sequence was imported into OGRDB via bulk update with the following notes: |
Attachments
History
History logs the times and reasons for the publication of each version of this sequence.
| William Lees 2026-01-06 16:42:42 | Version 1 published First version of the macaque IGH germline set. |
| William Lees 2026-02-05 11:19:42 | Version 2 published Fixed a problem with some sequences having the wrong coordinates for evidence annotation. |
Changes from previous version
| v1 | v2 | |
|---|---|---|
| Gene start | 60 | 140 |
| Gene end | 355 | 435 |
| L-PART2 Start | 49 | 129 |
| L-PART2 End | 59 | 139 |
| CDR1 Start | 135 | 215 |
| CDR1 End | 158 | 238 |
| CDR2 Start | 210 | 290 |
| CDR2 End | 233 | 313 |
| CDR3 Start | 348 | 428 |
| v_rs_start | 356 | 436 |
| v_rs_end | 393 | 473 |
| Notes | changed |
Versions
All published versions of this sequence.
| Sequence Name | IMGT Name | Version | Date |
|---|---|---|---|
| IGHV5-2GFF*04 | 1 | 2026-01-06 | |
| IGHV5-2GFF*04 | 2 | 2026-02-05 |