Details

SpeciesMouse
Species subgroupNZB/BlNJ
Subgroup typestrain
Sequence NameIGKV-QJ5L
IUIS NameMusmus IGKV4-52*01 ORF, or Musmus IGKV4-54*01 ORF
Alternative namesKos et al: IGKV4-52*01_NZB
Affirmation Level1
Full Sequence
Coding Sequence
FunctionalityORF
Inference TypeRearranged
Mapped
Paralogs
Paralog Rep

Un-rearranged Observations

Un-rearranged sequence observations that support this sequence:

No Items

Observations in AIRR-seq Repertoires

Click here to review supporting data in VDJbase.

Clicking the link will take you to VDJbase. Open in a new tab if you want to keep this page open. In VDJbase, click on the count in the Apperances column to see a list of samples in which the sequence was found.

CDR delineation

CDR1 Start79
CDR1 End93
CDR2 Start145
CDR2 End153
CDR3 Start262

Non-Core Regions

UTR 5' Start
UTR 5' End
L-PART1 Start
L-PART1 End
L_PART1
L-PART2 Start
L-PART2 End
L_PART2
v_rs_start
v_rs_end
V_HEPTAMER
V_NONAMER

Extension

3' Extension
3' start
3' end
5' start
5' end

Additional Information

Sequence IDA00740
CuratorWilliam Lees
Curator addressBirkbeck College, University of London, Malet Street, London
Version1
Release Date2022-05-03
Release Notes

https://www.amazon.co.uk/Metre-Metal-Blocked-Unblocker-Cleaner/dp/B00UNGS08K/ref=sr_1_18?keywords=drain+unblocker&qid=1651577716&sprefix=drain%2Caps%2C68&sr=8-18

LocusIGK
Sequence TypeV
Gene Subgroup
Gene Designation
Allele Designation

Acknowledgements

Individuals acknowledged as contributing to this sequence:

No Items

Notes

Notes are added by IARC reviewers.

Imported to OGRDB with the following notes:
Conserved Trp not found

Attachments

No Items

History

History logs the times and reasons for the publication of each version of this sequence.

William Lees
2022-05-03 11:42:00
Version 1 published

This version as published in preprint at https://www.biorxiv.org/content/10.1101/2022.05.01.489089v1

Versions

All published versions of this sequence.

Sequence NameIMGT NameAlternative namesInference TypeAffirmation LevelSpecies subgroupSubgroup typeGene startGene endUTR 5' StartUTR 5' EndL-PART1 StartL-PART1 EndL-PART2 StartL-PART2 EndCDR1 StartCDR1 EndCDR2 StartCDR2 EndCDR3 Startv_rs_startv_rs_endd_rs_3_prime_startd_rs_3_prime_endd_rs_5_prime_startd_rs_5_prime_endj_rs_startj_rs_endCodon FrameVersionDate
IGKV-QJ5LMusmus IGKV4-52*01 ORF, or Musmus IGKV4-54*01 ORFKos et al: IGKV4-52*01_NZBRearranged1NZB/BlNJstrain1286799314515326212022-05-03