Sequence IGHJ4*02
Details
| Species | Oncorhynchus mykiss |
| Species subgroup | Arlee |
| Subgroup type | strain |
| Sequence Name | IGHJ4*02 |
| IUIS Name | IGHJ4 |
| Alternative names | |
| Affirmation Level | 1 |
| Full Sequence | |
| Coding Sequence | |
| Functionality | F |
| Inference Type | Unrearranged |
| Mapped | True |
| Paralogs | |
| Paralog Rep | False |
Un-rearranged Observations
Un-rearranged sequence observations that support this sequence:
| Accession | Type | Repository | Start | End | Coding Sequence | SC Coding Sequence |
|---|---|---|---|---|---|---|
| NC_048577 | J | GenBank | 52066563 | 52066652 |
Observations in AIRR-seq Repertoires
Click here to review supporting data in VDJbase.
Clicking the link will take you to VDJbase. Open in a new tab if you want to keep this page open. In VDJbase, click on the count in the Apperances column to see a list of samples in which the sequence was found.
Non-Core Regions
| j_rs_start | 1 |
| j_rs_end | 39 |
| J_HEPTAMER | CACTGTG |
| J_NONAMER | GGTTTTTGT |
| Exon 1 Start | |
| Exon 1 End | |
| Exon 2 Start | |
| Exon 2 End | |
| Exon 3 Start | |
| Exon 3 End | |
| Exon 4 Start | |
| Exon 4 End | |
| Exon 5 Start | |
| Exon 5 End | |
| Exon 6 Start | |
| Exon 6 End | |
| Exon 7 Start | |
| Exon 7 End | |
| Exon 8 Start | |
| Exon 8 End | |
| Exon 9 Start | |
| Exon 9 End | |
| UTR 3' Start | |
| UTR 3' End |
Additional Information
| Sequence ID | A04179 |
| Curator | William Lees |
| Curator address | Clareo Biosciences, Louisville, Kentucky, USA |
| Version | 1 |
| Release Date | 2026-06-20 |
| Release Notes | First version of the Oncorhynchus_mykiss_IGH_VDJ germline set. |
| Locus | IGH |
| Sequence Type | J |
| Gene Subgroup | 4 |
| Gene Designation | |
| Allele Designation | 02 |
| Gene start | 40 |
| Gene end | 90 |
| Codon Frame | 3 |
| J CDR3 End | 18 |
Notes
Notes are added by IARC reviewers.
| Information for this sequence was imported into OGRDB via bulk update with the following notes: |
Attachments
No Items
History
History logs the times and reasons for the publication of each version of this sequence.
| William Lees 2026-06-20 09:50:39 | Version 1 published First version of the Oncorhynchus_mykiss_IGH_VDJ germline set. |