Sequence IGHV8-47-3*01
Details
| Species | Oncorhynchus mykiss |
| Species subgroup | Arlee |
| Subgroup type | strain |
| Sequence Name | IGHV8-47-3*01 |
| IUIS Name | IGHV8-47-3 |
| Alternative names | |
| Affirmation Level | 1 |
| Full Sequence | |
| Coding Sequence | |
| Functionality | P |
| Inference Type | Unrearranged |
| Mapped | True |
| Paralogs | |
| Paralog Rep | False |
Un-rearranged Observations
Un-rearranged sequence observations that support this sequence:
| Accession | Type | Repository | Start | End | Coding Sequence | SC Coding Sequence |
|---|---|---|---|---|---|---|
| NC_048577 | V | GenBank | 51630743 | 51631061 |
Observations in AIRR-seq Repertoires
Click here to review supporting data in VDJbase.
Clicking the link will take you to VDJbase. Open in a new tab if you want to keep this page open. In VDJbase, click on the count in the Apperances column to see a list of samples in which the sequence was found.
CDR delineation
| CDR1 Start | 67 |
| CDR1 End | 90 |
| CDR2 Start | 142 |
| CDR2 End | 162 |
| CDR3 Start | 271 |
Non-Core Regions
| UTR 5' Start | |
| UTR 5' End | |
| L-PART1 Start | |
| L-PART1 End | |
| L_PART1 | |
| L-PART2 Start | |
| L-PART2 End | |
| L_PART2 | |
| v_rs_start | 281 |
| v_rs_end | 319 |
| V_HEPTAMER | CACTATG |
| V_NONAMER | GACCGTCTG |
| Exon 1 Start | |
| Exon 1 End | |
| Exon 2 Start | |
| Exon 2 End | |
| Exon 3 Start | |
| Exon 3 End | |
| Exon 4 Start | |
| Exon 4 End | |
| Exon 5 Start | |
| Exon 5 End | |
| Exon 6 Start | |
| Exon 6 End | |
| Exon 7 Start | |
| Exon 7 End | |
| Exon 8 Start | |
| Exon 8 End | |
| Exon 9 Start | |
| Exon 9 End | |
| UTR 3' Start | |
| UTR 3' End |
Extension
| 3' Extension | |
| 3' start | |
| 3' end | |
| 5' start | |
| 5' end |
Additional Information
| Sequence ID | A04116 |
| Curator | William Lees |
| Curator address | Clareo Biosciences, Louisville, Kentucky, USA |
| Version | 1 |
| Release Date | 2026-06-20 |
| Release Notes | First version of the Oncorhynchus_mykiss_IGH_VDJ germline set. |
| Locus | IGH |
| Sequence Type | V |
| Gene Subgroup | 8 |
| Gene Designation | 47-3 |
| Allele Designation | 01 |
| Gene start | 1 |
| Gene end | 280 |
Notes
Notes are added by IARC reviewers.
| Information for this sequence was imported into OGRDB via bulk update with the following notes: |
Attachments
No Items
History
History logs the times and reasons for the publication of each version of this sequence.
| William Lees 2026-06-20 09:50:44 | Version 1 published First version of the Oncorhynchus_mykiss_IGH_VDJ germline set. |
Versions
All published versions of this sequence.
| Sequence Name | IUIS Name | Version | Date |
|---|---|---|---|
| IGHV8-47-3*01 | IGHV8-47-3 | 1 | 2026-06-20 |