Sequence IGLJ4*01
Details
| Species | Homo sapiens |
| Species subgroup | |
| Subgroup type | |
| Sequence Name | IGLJ4*01 |
| IUIS Name | IGLJ4*01 |
| Alternative names | |
| Affirmation Level | 1 |
| Full Sequence | |
| Coding Sequence | |
| Functionality | ORF |
| Inference Type | Unrearranged Only |
| Mapped | True |
| Paralogs | |
| Paralog Rep | False |
Un-rearranged Observations
Un-rearranged sequence observations that support this sequence:
| Accession | Type | Repository | Start | End | Coding Sequence | SC Coding Sequence |
|---|---|---|---|---|---|---|
| D87023 | Nonlocational | GenBank | 36131 | 36196 | ||
| Gibson:HG01106 | Locational | GenBank | 1 | 66 | ||
| GRCh38:NC_000022.11 | Locational | GenBank | 884467 | 884532 |
Observations in AIRR-seq Repertoires
Click here to review supporting data in VDJbase.
Clicking the link will take you to VDJbase. Open in a new tab if you want to keep this page open. In VDJbase, click on the count in the Apperances column to see a list of samples in which the sequence was found.
Non-Core Regions
| j_rs_start | 1 |
| j_rs_end | 28 |
| J_HEPTAMER | CACCGCA |
| J_NONAMER | AGTTTTTGT |
| Exon 1 Start | |
| Exon 1 End | |
| Exon 2 Start | |
| Exon 2 End | |
| Exon 3 Start | |
| Exon 3 End | |
| Exon 4 Start | |
| Exon 4 End | |
| Exon 5 Start | |
| Exon 5 End | |
| Exon 6 Start | |
| Exon 6 End | |
| Exon 7 Start | |
| Exon 7 End | |
| Exon 8 Start | |
| Exon 8 End | |
| Exon 9 Start | |
| Exon 9 End | |
| UTR 3' Start | |
| UTR 3' End |
Additional Information
| Sequence ID | A02873 |
| Curator | William Lees |
| Curator address | Birkbeck College, University of London, Malet Street, London |
| Version | 2 |
| Release Date | 2024-10-12 |
| Release Notes | J gene metadata updated to conform to MiAIRR standards |
| Locus | IGL |
| Sequence Type | J |
| Gene Subgroup | 4 |
| Gene Designation | |
| Allele Designation | 01 |
| Gene start | 29 |
| Gene end | 66 |
| Codon Frame | 2 |
| J CDR3 End | 8 |
Notes
Notes are added by IARC reviewers.
| Information for this sequence was imported into OGRDB via bulk update with the following notes: |
Attachments
History
History logs the times and reasons for the publication of each version of this sequence.
| William Lees 2023-07-10 11:24:45 | Version 1 published Bulk upload of sequences for the AIRR-C Human IG germline sets |
| William Lees 2024-10-12 11:14:13 | Version 2 published J gene metadata updated to conform to MiAIRR standards |
Changes from previous version
| v1 | v2 | |
|---|---|---|
| Codon Frame | 0 | 2 |
| J CDR3 End | 66 | 8 |