Details

SpeciesHomo sapiens
Species subgroup
Subgroup type
Sequence NameIGKJ1*01
IUIS NameIGKJ1*01
Alternative names
Affirmation Level1
Full Sequence
Coding Sequence
FunctionalityORF
Inference TypeGenomic and rearranged
MappedTrue
Paralogs
Paralog RepFalse

Un-rearranged Observations

Un-rearranged sequence observations that support this sequence:

AccessionTypeRepositoryStartEnd
AH002839NonlocationalGenBank212288
NG_000834NonlocationalGenBank479739479815
GRCh38:NC_000002.12LocationalGenBank13779471377871

Observations in AIRR-seq Repertoires

Click here to review supporting data in VDJbase.

Clicking the link will take you to VDJbase. Open in a new tab if you want to keep this page open. In VDJbase, click on the count in the Apperances column to see a list of samples in which the sequence was found.

Non-Core Regions

j_rs_start1
j_rs_end39
J_HEPTAMERCACTGTG
J_NONAMERGGTTTCTGT

Additional Information

Sequence IDA02788
CuratorWilliam Lees
Curator addressBirkbeck College, University of London, Malet Street, London
Version2
Release Date2024-10-12
Release Notes

J gene metadata updated to conform to MiAIRR standards

LocusIGK
Sequence TypeJ
Gene Subgroup1
Gene Designation
Allele Designation01
Gene start40
Gene end77
Codon Frame2
J CDR3 End8

Acknowledgements

Individuals acknowledged as contributing to this sequence:

No Items

Notes

Notes are added by IARC reviewers.

Information for this sequence was imported into OGRDB via bulk update with the following notes:
Sequence annotation is based on Genbank sample AH002839
VDJbase example haplotype: P1_I10

Attachments

No Items

History

History logs the times and reasons for the publication of each version of this sequence.

William Lees
2023-07-10 11:24:42
Version 1 published

Bulk upload of sequences for the AIRR-C Human IG germline sets

William Lees
2024-10-12 11:14:12
Version 2 published

J gene metadata updated to conform to MiAIRR standards

Changes from previous version

v1v2
Codon Frame12
J CDR3 End778

Versions

All published versions of this sequence.

Sequence NameIMGT NameVersionDate
IGKJ1*01IGKJ1*0112023-07-10
IGKJ1*01IGKJ1*0122024-10-12