Sequence IGHJ5*02
Details
| Species | Homo sapiens |
| Species subgroup | |
| Subgroup type | |
| Sequence Name | IGHJ5*02 |
| IUIS Name | IGHJ5*02 |
| Alternative names | |
| Affirmation Level | 1 |
| Full Sequence | |
| Coding Sequence | |
| Functionality | ORF |
| Inference Type | Genomic and rearranged |
| Mapped | True |
| Paralogs | |
| Paralog Rep | False |
Un-rearranged Observations
Un-rearranged sequence observations that support this sequence:
| Accession | Type | Repository | Start | End |
|---|---|---|---|---|
| X97051 | Nonlocational | GenBank | 89117 | 89206 |
| X86359 | Nonlocational | GenBank | 1839 | 1928 |
| ON023005 | Nonlocational | GenBank | 115 | 204 |
| GRCh38:CM000676.2 | Locational | GenBank | 1015942 | 1016031 |
Observations in AIRR-seq Repertoires
Click here to review supporting data in VDJbase.
Clicking the link will take you to VDJbase. Open in a new tab if you want to keep this page open. In VDJbase, click on the count in the Apperances column to see a list of samples in which the sequence was found.
Non-Core Regions
| j_rs_start | 1 |
| j_rs_end | 39 |
| J_HEPTAMER | CAATGTG |
| J_NONAMER | AGTTCTTGC |
Additional Information
| Sequence ID | A02643 |
| Curator | William Lees |
| Curator address | Birkbeck College, University of London, Malet Street, London |
| Version | 2 |
| Release Date | 2024-10-12 |
| Release Notes | J gene metadata updated to conform to MiAIRR standards |
| Locus | IGH |
| Sequence Type | J |
| Gene Subgroup | 5 |
| Gene Designation | |
| Allele Designation | 02 |
| Gene start | 40 |
| Gene end | 90 |
| Codon Frame | 3 |
| J CDR3 End | 18 |
Notes
Notes are added by IARC reviewers.
| Information for this sequence was imported into OGRDB via bulk update with the following notes: |
Attachments
History
History logs the times and reasons for the publication of each version of this sequence.
| William Lees 2023-07-10 11:24:34 | Version 1 published Bulk upload of sequences for the AIRR-C Human IG germline sets |
| William Lees 2024-10-12 11:14:12 | Version 2 published J gene metadata updated to conform to MiAIRR standards |
Changes from previous version
| v1 | v2 | |
|---|---|---|
| Codon Frame | 2 | 3 |
| J CDR3 End | 90 | 18 |