Sequence TRB1V2-1
Details
| Species | Salmon |
| Species subgroup | |
| Subgroup type | |
| Sequence Name | TRB1V2-1 |
| IUIS Name | TRB1V2-1 |
| Alternative names | TRB09RV2-1 |
| Affirmation Level | 1 |
| Full Sequence | |
| Coding Sequence | |
| Functionality | F |
| Inference Type | Genomic and rearranged |
| Mapped | True |
| Paralogs | |
| Paralog Rep | False |
Un-rearranged Observations
Un-rearranged sequence observations that support this sequence:
| Accession | Type | Repository | Start | End |
|---|---|---|---|---|
| NC_059450.1 | GenBank | 48314588 | 48314081 |
Observations in AIRR-seq Repertoires
Click here to review supporting data in VDJbase.
Clicking the link will take you to VDJbase. Open in a new tab if you want to keep this page open. In VDJbase, click on the count in the Apperances column to see a list of samples in which the sequence was found.
CDR delineation
| CDR1 Start | 79 |
| CDR1 End | 96 |
| CDR2 Start | 148 |
| CDR2 End | 159 |
| CDR3 Start | 271 |
Non-Core Regions
| UTR 5' Start | |
| UTR 5' End | |
| L-PART1 Start | 1 |
| L-PART1 End | |
| L_PART1 | |
| L-PART2 Start | 176 |
| L-PART2 End | |
| L_PART2 | |
| v_rs_start | 469 |
| v_rs_end | 508 |
| V_HEPTAMER | ACACAGT |
| V_NONAMER | ACAAAAACC |
Extension
| 3' Extension | |
| 3' start | |
| 3' end | |
| 5' start | |
| 5' end |
Additional Information
| Sequence ID | A03102 |
| Curator | William Lees |
| Curator address | Birkbeck College, University of London, Malet Street, London |
| Version | 1 |
| Release Date | 2024-04-09 |
| Release Notes | First release. |
| Locus | TRB |
| Sequence Type | V |
| Gene Subgroup | V2 |
| Gene Designation | 1 |
| Allele Designation |
Notes
Notes are added by IARC reviewers.
| Information for this sequence was imported into OGRDB via bulk update with the following notes: |
Attachments
No Items
History
History logs the times and reasons for the publication of each version of this sequence.
| William Lees 2024-04-09 08:28:17 | Version 1 published First release. |
Versions
All published versions of this sequence.
| Sequence Name | IMGT Name | Alternative names | Inference Type | Affirmation Level | Species subgroup | Subgroup type | Gene start | Gene end | UTR 5' Start | UTR 5' End | L-PART1 Start | L-PART1 End | L-PART2 Start | L-PART2 End | CDR1 Start | CDR1 End | CDR2 Start | CDR2 End | CDR3 Start | v_rs_start | v_rs_end | d_rs_3_prime_start | d_rs_3_prime_end | d_rs_5_prime_start | d_rs_5_prime_end | j_rs_start | j_rs_end | Codon Frame | Version | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| TRB1V2-1 | TRB1V2-1 | TRB09RV2-1 | Genomic and rearranged | 1 | 1 | 508 | 1 | 176 | 79 | 96 | 148 | 159 | 271 | 469 | 508 | 1 | 2024-04-09 |