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Germline Sets

Species Selection

Tools and Resources
Command Line Tools

For easy command line downloads, see download_germline_set in the receptor_utils package.

Want more FASTA header information? Try receptor-germline-tools.

Analysis Workflows

The receptor_utils documentation has walkthroughs for using germline sets with IgBLAST and MiXCR.

Use the OGRDB REST API V2 for programmatic access.

Publication: For information on these sets, see our paper.
Formats: For an explanation of different file formats and their usage, see this article.

Published Sets (click on Set Name for details and version history)

Set NameLocusRelease VersionRelease DateDownload AIRR-Seq Reference SetDOI
IGHCIGH12026-01-01 AIRR (JSON) FASTA Gapped FASTA UngappedDOI
IGH_VDJIGH102026-05-27 AIRR (JSON) FASTA Gapped FASTA UngappedDOI
IGKappa_VJIGK52026-05-27 AIRR (JSON) FASTA Gapped FASTA UngappedDOI
IGLambda_VJIGL42026-05-27 AIRR (JSON) FASTA Gapped FASTA UngappedDOI