Sequence TRB1J1
Details
| Species | Salmon |
| Species subgroup | |
| Subgroup type | |
| Sequence Name | TRB1J1 |
| IUIS Name | TRB1J1 |
| Alternative names | TRB09RJ1 |
| Affirmation Level | 1 |
| Full Sequence | |
| Coding Sequence | |
| Functionality | ORF |
| Inference Type | Genomic only |
| Mapped | True |
| Paralogs | |
| Paralog Rep | False |
Un-rearranged Observations
Un-rearranged sequence observations that support this sequence:
| Accession | Type | Repository | Start | End |
|---|---|---|---|---|
| NC_059450.1 | GenBank | 47738463 | 47738385 |
Observations in AIRR-seq Repertoires
Click here to review supporting data in VDJbase.
Clicking the link will take you to VDJbase. Open in a new tab if you want to keep this page open. In VDJbase, click on the count in the Apperances column to see a list of samples in which the sequence was found.
Non-Core Regions
| j_rs_start | 1 |
| j_rs_end | 28 |
| J_HEPTAMER | CGGTGTG |
| J_NONAMER | ATTTTTAGA |
Additional Information
| Sequence ID | A03039 |
| Curator | William Lees |
| Curator address | Birkbeck College, University of London, Malet Street, London |
| Version | 1 |
| Release Date | 2024-04-09 |
| Release Notes | First release. |
| Locus | TRB |
| Sequence Type | J |
| Gene Subgroup | J1 |
| Gene Designation | |
| Allele Designation | |
| Codon Frame | 0 |
| J CDR3 End | 47 |
Notes
Notes are added by IARC reviewers.
| Information for this sequence was imported into OGRDB via bulk update with the following notes: |
Attachments
No Items
History
History logs the times and reasons for the publication of each version of this sequence.
| William Lees 2024-04-09 08:28:16 | Version 1 published First release. |
Versions
All published versions of this sequence.
| Sequence Name | IMGT Name | Alternative names | Inference Type | Affirmation Level | Species subgroup | Subgroup type | Gene start | Gene end | UTR 5' Start | UTR 5' End | L-PART1 Start | L-PART1 End | L-PART2 Start | L-PART2 End | CDR1 Start | CDR1 End | CDR2 Start | CDR2 End | CDR3 Start | v_rs_start | v_rs_end | d_rs_3_prime_start | d_rs_3_prime_end | d_rs_5_prime_start | d_rs_5_prime_end | j_rs_start | j_rs_end | Codon Frame | Version | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| TRB1J1 | TRB1J1 | TRB09RJ1 | Genomic only | 1 | 1 | 80 | 1 | 28 | 0 | 1 | 2024-04-09 |