Details

SpeciesHuman
Species subgroup
Subgroup typenone
Sequence NameIGHV5-51*01
IUIS NameIGHV5-51*01
Alternative names
Affirmation Level1
Full Sequence
Coding Sequence
FunctionalityORF
Inference TypeGenomic and rearranged
MappedTrue
Paralogs
Paralog RepFalse

Un-rearranged Observations

Un-rearranged sequence observations that support this sequence:

AccessionTypeRepositoryStartEnd
M99686NonlocationalGenBank168641
GRCh38:CM000676.2LocationalGenBank300668301141

Observations in AIRR-seq Repertoires

Click here to review supporting data in VDJbase.

Clicking the link will take you to VDJbase. Open in a new tab if you want to keep this page open. In VDJbase, click on the count in the Apperances column to see a list of samples in which the sequence was found.

CDR delineation

CDR1 Start216
CDR1 End239
CDR2 Start291
CDR2 End314
CDR3 Start429

Non-Core Regions

UTR 5' Start
UTR 5' End
L-PART1 Start1
L-PART1 End46
L_PART1ATGGGGTCAACCGCCATCCTCGCCCTCCTCCTGGCTGTTCTCCAAG
L-PART2 Start130
L-PART2 End140
L_PART2GAGTCTGTGCC
v_rs_start437
v_rs_end474
V_HEPTAMERCACAGTG
V_NONAMERTCTAAAACC

Extension

3' Extension
3' start
3' end
5' start
5' end

Additional Information

Sequence IDA02779
CuratorWilliam Lees
Curator addressBirkbeck College, University of London, Malet Street, London
Version2
Release Date2024-02-24
Release Notes

Base annotation against GRCh38 to obtain leader sequence

LocusIGH
Sequence TypeV
Gene Subgroup5
Gene Designation51
Allele Designation01

Acknowledgements

Individuals acknowledged as contributing to this sequence:

No Items

Notes

Notes are added by IARC reviewers.

Sequence annotation is based on GRCh38:CM000676.2
Leader verified against Huang, Thörnqvist and Ohlin, 2021
VDJbase example haplotype: P1_I12

Attachments

No Items

History

History logs the times and reasons for the publication of each version of this sequence.

William Lees
2023-07-10 11:24:42
Version 1 published

Bulk upload of sequences for the AIRR-C Human IG germline sets

William Lees
2024-02-24 09:58:27
Version 2 published

Base annotation against GRCh38 to obtain leader sequence

Changes from previous version

v1v2
Subgroup typenone
Full Sequence
Gene start308141
Gene end603436
L-PART1 Start1
L-PART1 End46
L-PART2 Start297130
L-PART2 End307140
CDR1 Start383216
CDR1 End406239
CDR2 Start458291
CDR2 End481314
CDR3 Start596429
v_rs_start604437
v_rs_end641474
Codon Frame1
3' Extension
5' Extension
Noteschanged

Versions

All published versions of this sequence.

Sequence NameIMGT NameAlternative namesInference TypeAffirmation LevelSpecies subgroupSubgroup typeVersionDate
IGHV5-51*01IGHV5-51*01Genomic and rearranged112023-07-10
IGHV5-51*01IGHV5-51*01Genomic and rearranged1none22024-02-24