Details

SpeciesHuman
Species subgroup
Subgroup typenone
Sequence NameIGHD2-21*01
IUIS NameIGHD2-21*01
Alternative names
Affirmation Level1
Full Sequence
Coding Sequence
FunctionalityORF
Inference TypeGenomic and rearranged
MappedTrue
Paralogs
Paralog RepFalse

Un-rearranged Observations

Un-rearranged sequence observations that support this sequence:

AccessionTypeRepositoryStartEnd
AH002720NonlocationalGenBank565648
OP255040NonlocationalGenBank24942577

Observations in AIRR-seq Repertoires

Click here to review supporting data in VDJbase.

Clicking the link will take you to VDJbase. Open in a new tab if you want to keep this page open. In VDJbase, click on the count in the Apperances column to see a list of samples in which the sequence was found.

Non-Core Regions

d_rs_3_prime_start57
d_rs_3_prime_end84
d_rs_5_prime_start1
d_rs_5_prime_end28
D_3_HEPTAMERCACAGTG
D_3_NONAMERTCCTAAAGC
D_5_HEPTAMERCACTGTG
D_5_NONAMERGGATTTTGT

Additional Information

Sequence IDA02617
CuratorWilliam Lees
Curator addressBirkbeck College, University of London, Malet Street, London
Version2
Release Date2023-08-16
Release Notes

Added additional evidence from Rodriguez et al., 2023

LocusIGH
Sequence TypeD
Gene Subgroup2
Gene Designation21
Allele Designation01

Acknowledgements

Individuals acknowledged as contributing to this sequence:

No Items

Notes

Notes are added by IARC reviewers.

Information for this sequence was imported into OGRDB via bulk update with the following notes:
Sequence annotation is based on Genbank sample AH002720
VDJbase example haplotype: P1_I21
VDJbase example haplotype: P1_I28
Mapped by P1_I21 haplotype
Sequence observed in data from Rodriguez et al., 2023 as reported in VDJbase (25 samples). Example subject: P25_I13.

Attachments

No Items

History

History logs the times and reasons for the publication of each version of this sequence.

William Lees
2023-07-10 11:24:33
Version 1 published

Bulk upload of sequences for the AIRR-C Human IG germline sets

William Lees
2023-08-16 13:01:35
Version 2 published

Added additional evidence from Rodriguez et al., 2023

Changes from previous version

v1v2
Subgroup typenone
Codon Frame1
3' Extension
5' Extension
Noteschanged

Versions

All published versions of this sequence.

Sequence NameIMGT NameAlternative namesInference TypeAffirmation LevelSpecies subgroupSubgroup typeVersionDate
IGHD2-21*01IGHD2-21*01Genomic and rearranged112023-07-10
IGHD2-21*01IGHD2-21*01Genomic and rearranged1none22023-08-16