Details

SpeciesHomo sapiens
Species subgroup
Subgroup type
Sequence NameIGHV4-28*05
IUIS NameIGHV4-28*05
Alternative names
Affirmation Level1
Full Sequence
Coding Sequence
FunctionalityORF
Inference TypeGenomic Only
MappedFalse
Paralogs
Paralog RepFalse

Un-rearranged Observations

Un-rearranged sequence observations that support this sequence:

AccessionTypeRepositoryStartEnd
HM855916NonlocationalGenBank1332

Observations in AIRR-seq Repertoires

Click here to review supporting data in VDJbase.

Clicking the link will take you to VDJbase. Open in a new tab if you want to keep this page open. In VDJbase, click on the count in the Apperances column to see a list of samples in which the sequence was found.

CDR delineation

CDR1 Start122
CDR1 End148
CDR2 Start200
CDR2 End220
CDR3 Start335

Non-Core Regions

UTR 5' Start
UTR 5' End
L-PART1 Start
L-PART1 End
L_PART1
L-PART2 Start36
L-PART2 End46
L_PART2GGGTCCTGTCC
v_rs_start343
v_rs_end371
V_HEPTAMER
V_NONAMER

Extension

3' Extension
3' start
3' end
5' start
5' end

Additional Information

Sequence IDA02979
CuratorWilliam Lees
Curator addressBirkbeck College, University of London, Malet Street, London
Version1
Release Date2023-08-15
Release Notes

Sequences added following discussion at IARC meeting on 9th August 2023

LocusIGH
Sequence TypeV
Gene Subgroup4
Gene Designation28
Allele Designation05
Gene start47
Gene end342

Acknowledgements

Individuals acknowledged as contributing to this sequence:

No Items

Notes

Notes are added by IARC reviewers.

Information for this sequence was imported into OGRDB via bulk update with the following notes:
Sequence annotation is based on Genbank sample HM855916. Sequence observed in data from Rodriguez et al.
2023 as reported in VDJbase (10 samples). Example subject: P25_I34.

Attachments

No Items

History

History logs the times and reasons for the publication of each version of this sequence.

William Lees
2023-08-15 12:54:49
Version 1 published

Sequences added following discussion at IARC meeting on 9th August 2023

Versions

All published versions of this sequence.

Sequence NameIMGT NameVersionDate
IGHV4-28*05IGHV4-28*0512023-08-15